FvH4_1g10910

Ganglioside-induced differentiation-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015291
Physical Location & Seq
Reverse (-)
5948999 .. 5950773
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10910.t1

Sequence Viewer

Length: 615 bp
ATGATCACCGCCGCTCAAATCTCCGATTCCGAACAGCTTGCCCTTCTCGACAAGCTCCACGTCTTCCAGATCCACGGCCGCGACAAACGCGGCCGCCCCATCCTTCGCGTCATTGCCAAATTCTTCCCAGCTCGGATTGTGAGCGTGGATGTTCTGAGGAAGTATCTGGAAGAGAAGATATTCCCGGAGCTGGAGAACAAGCCGTTCGCGGTGGTGTACGTCCACACCGGAGTTCAGAGGTGCGAGAATTTCCCCGGAATCTCCGCCCTCCGATCAATCTACGACGCGATTCCGATCAACGTCAAGCAGAATCTAGAAGCTGTCTATTTTCTTCATCCAGGTCTTCAGGCCCGGCTCTTCTTGGCCACCTTCGGCCGCTTCCTTTTCACTGGAGGGGTGTATGGGAAGCTGAAGTACGTGAGCAGGCTCGATTATCTGTGGGAGCACGTGAGGAGGAGCGAGATCGACGTCCCTGATTTCGTGTATGACCACGATGAGGACTTGGAGCACCGTCCGATGATGGACTATGGATTGGAAAGCGACCACCCGAGGGTGTATGGTGCACCGGCAGTGGATTCGTCTGAGTCGATGTACTCCATGAGGTGCATCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2

Protein Analysis

205

Amino Acids

23.57

Weight (kDa)

6.45

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_2 PF13716 31 - 167 4.1e-40 Divergent CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35750
fragaria_vesca FvH4_1g10910
malus_domestica MD02G1122200.v1.1 MD15G1236100.v1.1
prunus_persica Prupe.7G176400_v2.0.a1
pyrus_communis pycom02g09510 pycom15g21010
rosa_chinensis RchiOBHm_Chr2g0098171
rosa_laevigata RLG00000016768
rosa_multiflora Rmu_sc0009178.1_g000010
rosa_roxburghii Rroxscaffold_2G00144230
rosa_rugosa Rorug02G0070700
rosa_samantha Rh2BG121000 Rh2CG122600 Rh2DG122500
rosa_wichuraiana Rw2G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 471
AccBSI CCGCTC 1 cut(s) 14
AccII CGCG 5 cut(s) 81, 90, 108, 209, 287
AciI CCGC 8 cut(s) 9, 12, 79, 90, 94, 209, 264, 376
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 4 cut(s) 76, 91, 363, 373
AcsI RAATTY 2 cut(s) 119, 247
AcuI CTGAAG 2 cut(s) 329, 431
AcvI CACGTG 1 cut(s) 448
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 3 cut(s) 218, 416, 593
AfiI CCNNNNNNNGG 3 cut(s) 190, 496, 550
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 6 cut(s) 37, 55, 131, 190, 320, 409
AluI AGCT 6 cut(s) 37, 55, 131, 190, 320, 409
Alw21I GWGCWC 3 cut(s) 447, 510, 565
Alw44I GTGCAC 1 cut(s) 561
AlwI GGATC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 547
AoxI GGCC 5 cut(s) 76, 91, 348, 363, 373
ApaLI GTGCAC 1 cut(s) 561
ApoI RAATTY 2 cut(s) 119, 247
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 3 cut(s) 185, 255, 352
AvaI CYCGRG 1 cut(s) 547
BaeGI GKGCMC 1 cut(s) 565
BalI TGGCCA 1 cut(s) 365
BarI GAAGNNNNNNTAC 2 cut(s) 398, 430
BbrPI CACGTG 1 cut(s) 448
BbsI GAAGAC 2 cut(s) 55, 335
Bbv12I GWGCWC 3 cut(s) 447, 510, 565
BccI CCATC 2 cut(s) 107, 514
BceAI ACGGC 2 cut(s) 91, 187
BcgI CGANNNNNNTGC 4 cut(s) 20, 54, 558, 592
BciT130I CCWGG 1 cut(s) 339
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 3 cut(s) 185, 255, 352
BfaI CTAG 1 cut(s) 314
BisI GCNGC 5 cut(s) 12, 79, 91, 94, 376
BlsI GCNGC 5 cut(s) 13, 80, 92, 95, 377
Bme1390I CCNGG 4 cut(s) 185, 255, 339, 352
BmeT110I CYCGRG 1 cut(s) 547
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 349
BmrFI CCNGG 4 cut(s) 185, 255, 339, 352
BpiI GAAGAC 2 cut(s) 55, 335
BpmI CTGGAG 2 cut(s) 212, 411
BpuMI CCSGG 3 cut(s) 185, 255, 352
BsaAI YACGTR 2 cut(s) 418, 448
BsaBI GATNNNNATC 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 468
BsaJI CCNNGG 3 cut(s) 73, 253, 548
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 496, 550
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 1 cut(s) 394
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 293
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 73, 253, 548
BseGI GGATG 3 cut(s) 99, 154, 334
BseJI GATNNNNATC 1 cut(s) 293
BseLI CCNNNNNNNGG 3 cut(s) 190, 496, 550
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 146, 573
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 2 cut(s) 466, 469
BseSI GKGCMC 1 cut(s) 565
BseX3I CGGCCG 3 cut(s) 76, 91, 373
BseYI CCCAGC 1 cut(s) 127
Bsh1236I CGCG 5 cut(s) 81, 90, 108, 209, 287
Bsh1285I CGRYCG 3 cut(s) 79, 94, 376
BshFI GGCC 5 cut(s) 78, 93, 350, 365, 375
BsiEI CGRYCG 3 cut(s) 79, 94, 376
BsiHKAI GWGCWC 3 cut(s) 447, 510, 565
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 5 cut(s) 185, 228, 255, 352, 566
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 3 cut(s) 190, 496, 550
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 5 cut(s) 78, 93, 350, 365, 375
BsoBI CYCGRG 1 cut(s) 547
Bsp1286I GDGCHC 3 cut(s) 447, 510, 565
Bsp143I GATC 5 cut(s) 3, 69, 272, 294, 462
BspACI CCGC 8 cut(s) 9, 12, 79, 90, 94, 209, 264, 376
BspANI GGCC 5 cut(s) 78, 93, 350, 365, 375
BspCNI CTCAG 2 cut(s) 147, 574
BspFNI CGCG 5 cut(s) 81, 90, 108, 209, 287
BspPI GGATC 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 362
BsrBI CCGCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 565
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 3 cut(s) 73, 253, 548
BssMI GATC 5 cut(s) 3, 69, 272, 294, 462
BssNI GRCGYC 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 512
Bst6I CTCTTC 2 cut(s) 165, 362
BstACI GRCGYC 1 cut(s) 468
BstBAI YACGTR 2 cut(s) 418, 448
BstC8I GCNNGC 2 cut(s) 39, 425
BstDEI CTNAG 2 cut(s) 155, 582
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 3 cut(s) 99, 154, 334
BstFNI CGCG 5 cut(s) 81, 90, 108, 209, 287
BstKTI GATC 5 cut(s) 6, 72, 275, 297, 465
BstMBI GATC 5 cut(s) 3, 69, 272, 294, 462
BstMCI CGRYCG 3 cut(s) 79, 94, 376
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 4 cut(s) 183, 253, 337, 350
BstSLI GKGCMC 1 cut(s) 565
BstUI CGCG 5 cut(s) 81, 90, 108, 209, 287
BstV2I GAAGAC 2 cut(s) 55, 335
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BstZI CGGCCG 3 cut(s) 76, 91, 373
BsuRI GGCC 5 cut(s) 78, 93, 350, 365, 375
BtgI CCRYGG 1 cut(s) 73
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 3 cut(s) 99, 154, 334
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 2 cut(s) 387, 576
Cac8I GCNNGC 2 cut(s) 39, 425
CciNI GCGGCCGC 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 1 cut(s) 349
CseI GACGC 2 cut(s) 97, 293
Csp6I GTAC 3 cut(s) 217, 415, 592
CviAII CATG 1 cut(s) 598
CviQI GTAC 3 cut(s) 217, 415, 592
DdeI CTNAG 2 cut(s) 155, 582
DpnI GATC 5 cut(s) 5, 71, 274, 296, 464
DpnII GATC 5 cut(s) 3, 69, 272, 294, 462
EaeI YGGCCR 4 cut(s) 76, 91, 363, 373
EagI CGGCCG 3 cut(s) 76, 91, 373
Eam1104I CTCTTC 2 cut(s) 165, 362
EarI CTCTTC 2 cut(s) 165, 362
EciI GGCGGA 1 cut(s) 253
EclXI CGGCCG 3 cut(s) 76, 91, 373
Eco52I CGGCCG 3 cut(s) 76, 91, 373
Eco57I CTGAAG 2 cut(s) 329, 431
Eco72I CACGTG 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 337
FaeI CATG 1 cut(s) 601
FaiI YATR 5 cut(s) 402, 486, 528, 558, 599
FaqI GGGAC 1 cut(s) 455
FatI CATG 1 cut(s) 597
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 5 cut(s) 12, 79, 91, 94, 376
FokI GGATG 3 cut(s) 86, 161, 321
Fsp4HI GCNGC 5 cut(s) 12, 79, 91, 94, 376
FspBI CTAG 1 cut(s) 314
GluI GCNGC 5 cut(s) 12, 79, 91, 94, 376
GsaI CCCAGC 1 cut(s) 131
GsuI CTGGAG 2 cut(s) 212, 411
HaeIII GGCC 5 cut(s) 78, 93, 350, 365, 375
HapII CCGG 5 cut(s) 185, 228, 255, 352, 566
HgaI GACGC 2 cut(s) 97, 293
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 1 cut(s) 601
HinfI GANTC 6 cut(s) 26, 258, 289, 310, 575, 584
HpaII CCGG 5 cut(s) 185, 228, 255, 352, 566
Hpy166II GTNNAC 3 cut(s) 217, 223, 563
Hpy188I TCNGA 9 cut(s) 25, 31, 135, 156, 237, 272, 294, 516, 583
Hpy188III TCNNGA 4 cut(s) 47, 67, 167, 314
Hpy8I GTNNAC 3 cut(s) 217, 223, 563
Hpy99I CGWCG 2 cut(s) 287, 470
HpyAV CCTTC 3 cut(s) 53, 113, 379
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 6 cut(s) 60, 219, 300, 417, 447, 468
HpyCH4V TGCA 2 cut(s) 563, 606
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 2 cut(s) 155, 582
HpySE526I ACGT 6 cut(s) 60, 219, 300, 417, 447, 468
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 1 cut(s) 601
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 5 cut(s) 3, 69, 272, 294, 462
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 5 cut(s) 60, 187, 442, 456, 505
MaeI CTAG 1 cut(s) 314
MaeII ACGT 6 cut(s) 60, 219, 300, 417, 447, 468
MalI GATC 5 cut(s) 5, 71, 274, 296, 464
MbiI CCGCTC 1 cut(s) 14
MboI GATC 5 cut(s) 3, 69, 272, 294, 462
MboII GAAGA 7 cut(s) 55, 115, 182, 187, 323, 335, 349
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 3 cut(s) 447, 510, 565
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 2 cut(s) 119, 247
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 1 cut(s) 593
MnlI CCTC 9 cut(s) 150, 231, 278, 386, 444, 447, 490, 543, 594
Mox20I TGGCCA 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 365
Msp20I TGGCCA 1 cut(s) 365
MspI CCGG 5 cut(s) 185, 228, 255, 352, 566
MspR9I CCNGG 4 cut(s) 185, 255, 339, 352
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 5 cut(s) 81, 90, 108, 209, 287
MwoI GCNNNNNNNGC 1 cut(s) 87
NciI CCSGG 3 cut(s) 185, 255, 352
NdeII GATC 5 cut(s) 3, 69, 272, 294, 462
NlaIII CATG 1 cut(s) 601
NotI GCGGCCGC 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 362
PcsI WCGNNNNNNNCGW 1 cut(s) 584
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 5 cut(s) 26, 258, 289, 310, 575
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 5 cut(s) 13, 80, 92, 95, 377
PleI GAGTC 1 cut(s) 592
PmaCI CACGTG 1 cut(s) 448
PmlI CACGTG 1 cut(s) 448
PpsI GAGTC 1 cut(s) 592
Ppu21I YACGTR 2 cut(s) 418, 448
Psp6I CCWGG 1 cut(s) 337
PspCI CACGTG 1 cut(s) 448
PspFI CCCAGC 1 cut(s) 127
PspGI CCWGG 1 cut(s) 337
PspPI GGNCC 1 cut(s) 349
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 3 cut(s) 218, 416, 593
RsaNI GTAC 3 cut(s) 217, 415, 592
SapI GCTCTTC 1 cut(s) 362
SatI GCNGC 5 cut(s) 12, 79, 91, 94, 376
Sau3AI GATC 5 cut(s) 3, 69, 272, 294, 462
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 4 cut(s) 185, 255, 339, 352
SduI GDGCHC 3 cut(s) 447, 510, 565
Sse9I AATT 2 cut(s) 119, 247
SsiI CCGC 8 cut(s) 9, 12, 79, 90, 94, 209, 264, 376
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 4 cut(s) 183, 253, 337, 350
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 6 cut(s) 63, 222, 303, 420, 450, 471
TaqI TCGA 4 cut(s) 48, 429, 465, 587
TasI AATT 2 cut(s) 119, 247
TatI WGTACW 1 cut(s) 591
TauI GCSGC 5 cut(s) 14, 81, 93, 96, 378
TfiI GAWTC 5 cut(s) 26, 258, 289, 310, 575
TscAI CASTG 2 cut(s) 394, 576
TspDTI ATGAA 1 cut(s) 323
TspRI CASTG 2 cut(s) 394, 576
VneI GTGCAC 1 cut(s) 561
XapI RAATTY 2 cut(s) 119, 247
XbaI TCTAGA 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 314
ZraI GACGTC 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.