Prupe.7G176400_v2.0.a1

Ganglioside-induced differentiation-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0015291
Physical Location & Seq
Forward (+)
17509400 .. 17510513
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G176400.1

Sequence Viewer

Length: 609 bp
ATGCCTACTCAAATATCCGAATCCGAACAACTGCAACTCATCGAAAAGCTCGAAATCTTCAGAATCAAAGGCAGAGACAAGCGCGGCCGCTCTATCCTTCGCATCATCGCCAAATTCTTCCCAGCGAGGATTGTGAGCGTGGATGCTCTGCGCAAATATTTGGAGGAGAAAATATTTCCAGAATTAGAGAAGAAGCCGTTCGCAGTGTTGTACGTGCACACCGGAGTTCAAAGGTGCGAGAACTTCCCCGGAATCTCCGCCGTCCGATCAATCTACGATGCGATCCCGATCAACGTCAAGCGCAATCTCGAAGCTGTGTATTTCCTCCACCCTGGCCTGCAAGCCCGCCTCTTCTTAGCCACCTTCGGCCGCTTCCTTTTCACCGGAGGGGTGTATGGGAAGCTGAAGTACGTGAGCAGGCTCGATTATCTGTGGGAGCACGTGCGGAGGAGCGAGATTGAGGTGCCTGAGTTCGTGTACGATCATGATGAGGACTTGGAGGACCGTCCGATGATGGACTACGGATTGGAGAGCGATCATCCGAGGGTGTACGATGCGCCCGCGGTTGATTCGCCTGTGTCTATGTACTCCATGAGATGCATCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2

Protein Analysis

203

Amino Acids

23.58

Weight (kDa)

6.97

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35750
fragaria_vesca FvH4_1g10910
malus_domestica MD02G1122200.v1.1 MD15G1236100.v1.1
prunus_persica Prupe.7G176400_v2.0.a1
pyrus_communis pycom02g09510 pycom15g21010
rosa_chinensis RchiOBHm_Chr2g0098171
rosa_laevigata RLG00000016768
rosa_multiflora Rmu_sc0009178.1_g000010
rosa_roxburghii Rroxscaffold_2G00144230
rosa_rugosa Rorug02G0070700
rosa_samantha Rh2BG121000 Rh2CG122600 Rh2DG122500
rosa_wichuraiana Rw2G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 463
AccBSI CCGCTC 1 cut(s) 90
AccII CGCG 2 cut(s) 84, 563
AciI CCGC 8 cut(s) 84, 88, 258, 346, 370, 445, 561, 563
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 2 cut(s) 85, 367
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 2 cut(s) 43, 425
AcvI CACGTG 1 cut(s) 442
AfaI GTAC 5 cut(s) 212, 410, 479, 551, 587
AgsI TTSAA 1 cut(s) 230
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 3 cut(s) 49, 314, 403
AluI AGCT 3 cut(s) 49, 314, 403
Alw21I GWGCWC 2 cut(s) 219, 441
Alw26I GTCTC 1 cut(s) 69
Alw44I GTGCAC 1 cut(s) 215
AlwI GGATC 1 cut(s) 277
AoxI GGCC 3 cut(s) 85, 334, 367
ApaLI GTGCAC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 4 cut(s) 84, 153, 303, 559
AspS9I GGNCC 1 cut(s) 502
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 373
AvaII GGWCC 1 cut(s) 502
BaeGI GKGCMC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 463
BarI GAAGNNNNNNTAC 2 cut(s) 392, 424
BbrPI CACGTG 1 cut(s) 442
Bbv12I GWGCWC 2 cut(s) 219, 441
BccI CCATC 1 cut(s) 508
BceAI ACGGC 2 cut(s) 181, 245
BciT130I CCWGG 1 cut(s) 333
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 69
BisI GCNGC 3 cut(s) 85, 88, 370
BlsI GCNGC 3 cut(s) 86, 89, 371
Bme1390I CCNGG 2 cut(s) 249, 333
Bme18I GGWCC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 2 cut(s) 249, 333
BmsI GCATC 5 cut(s) 111, 133, 268, 544, 587
BpuMI CCSGG 1 cut(s) 249
BsaAI YACGTR 3 cut(s) 214, 412, 442
BsaBI GATNNNNATC 1 cut(s) 287
BsaJI CCNNGG 4 cut(s) 247, 331, 542, 561
BsaWI WCCGGW 2 cut(s) 221, 383
Bse8I GATNNNNATC 1 cut(s) 287
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 4 cut(s) 247, 331, 542, 561
BseGI GGATG 2 cut(s) 148, 538
BseJI GATNNNNATC 1 cut(s) 287
BseMII CTCAG 1 cut(s) 459
BseRI GAGGAG 2 cut(s) 179, 463
BseSI GKGCMC 1 cut(s) 219
BseX3I CGGCCG 2 cut(s) 85, 367
BseYI CCCAGC 1 cut(s) 121
Bsh1236I CGCG 2 cut(s) 84, 563
Bsh1285I CGRYCG 2 cut(s) 88, 370
BshFI GGCC 3 cut(s) 87, 336, 369
BshNI GGYRCC 1 cut(s) 463
BsiEI CGRYCG 2 cut(s) 88, 370
BsiHKAI GWGCWC 2 cut(s) 219, 441
BsiSI CCGG 3 cut(s) 222, 249, 384
BsmAI GTCTC 1 cut(s) 69
BsnI GGCC 3 cut(s) 87, 336, 369
Bsp1286I GDGCHC 2 cut(s) 219, 441
Bsp143I GATC 5 cut(s) 266, 282, 288, 481, 535
BspACI CCGC 8 cut(s) 84, 88, 258, 346, 370, 445, 561, 563
BspANI GGCC 3 cut(s) 87, 336, 369
BspCNI CTCAG 1 cut(s) 460
BspFNI CGCG 2 cut(s) 84, 563
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 465
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 463
BsrBI CCGCTC 1 cut(s) 90
BssECI CCNNGG 4 cut(s) 247, 331, 542, 561
BssMI GATC 5 cut(s) 266, 282, 288, 481, 535
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 506
Bst6I CTCTTC 1 cut(s) 356
BstBAI YACGTR 3 cut(s) 214, 412, 442
BstC8I GCNNGC 5 cut(s) 338, 342, 346, 419, 561
BstDEI CTNAG 2 cut(s) 355, 468
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 2 cut(s) 148, 538
BstFNI CGCG 2 cut(s) 84, 563
BstHHI GCGC 4 cut(s) 84, 153, 303, 559
BstKTI GATC 5 cut(s) 269, 285, 291, 484, 538
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 5 cut(s) 266, 282, 288, 481, 535
BstMCI CGRYCG 2 cut(s) 88, 370
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 2 cut(s) 247, 331
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 2 cut(s) 84, 563
BstZI CGGCCG 2 cut(s) 85, 367
BsuRI GGCC 3 cut(s) 87, 336, 369
BtgI CCRYGG 1 cut(s) 561
BtgZI GCGATG 1 cut(s) 91
BtsCI GGATG 2 cut(s) 148, 538
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 5 cut(s) 338, 342, 346, 419, 561
CciI TCATGA 1 cut(s) 484
CciNI GCGGCCGC 1 cut(s) 85
CfoI GCGC 4 cut(s) 84, 153, 303, 559
Cfr13I GGNCC 1 cut(s) 502
Cfr42I CCGCGG 1 cut(s) 564
Csp6I GTAC 5 cut(s) 211, 409, 478, 550, 586
CviAII CATG 2 cut(s) 485, 592
CviQI GTAC 5 cut(s) 211, 409, 478, 550, 586
DdeI CTNAG 2 cut(s) 355, 468
DpnI GATC 5 cut(s) 268, 284, 290, 483, 537
DpnII GATC 5 cut(s) 266, 282, 288, 481, 535
EaeI YGGCCR 2 cut(s) 85, 367
EagI CGGCCG 2 cut(s) 85, 367
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
EciI GGCGGA 1 cut(s) 247
EclXI CGGCCG 2 cut(s) 85, 367
Eco47I GGWCC 1 cut(s) 502
Eco52I CGGCCG 2 cut(s) 85, 367
Eco57I CTGAAG 2 cut(s) 43, 425
Eco72I CACGTG 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 602
FaeI CATG 2 cut(s) 488, 595
FaiI YATR 5 cut(s) 396, 486, 584, 593, 607
FatI CATG 2 cut(s) 484, 591
FauI CCCGC 2 cut(s) 353, 568
Fnu4HI GCNGC 3 cut(s) 85, 88, 370
FokI GGATG 2 cut(s) 155, 525
Fsp4HI GCNGC 3 cut(s) 85, 88, 370
FspI TGCGCA 1 cut(s) 152
GlaI GCGC 4 cut(s) 83, 152, 302, 558
GluI GCNGC 3 cut(s) 85, 88, 370
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 3 cut(s) 87, 336, 369
HapII CCGG 3 cut(s) 222, 249, 384
HhaI GCGC 4 cut(s) 84, 153, 303, 559
Hin1II CATG 2 cut(s) 488, 595
Hin6I GCGC 4 cut(s) 82, 151, 301, 557
HinP1I GCGC 4 cut(s) 82, 151, 301, 557
HinfI GANTC 4 cut(s) 20, 63, 252, 569
HpaII CCGG 3 cut(s) 222, 249, 384
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 3 cut(s) 217, 478, 550
Hpy188I TCNGA 6 cut(s) 19, 25, 62, 266, 510, 543
Hpy188III TCNNGA 4 cut(s) 179, 286, 308, 485
Hpy8I GTNNAC 3 cut(s) 217, 478, 550
HpyAV CCTTC 2 cut(s) 107, 373
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4IV ACGT 4 cut(s) 213, 294, 411, 441
HpyCH4V TGCA 4 cut(s) 34, 217, 340, 600
HpyF3I CTNAG 2 cut(s) 355, 468
HpySE526I ACGT 4 cut(s) 213, 294, 411, 441
Hsp92II CATG 2 cut(s) 488, 595
HspAI GCGC 4 cut(s) 82, 151, 301, 557
KspI CCGCGG 1 cut(s) 564
Kzo9I GATC 5 cut(s) 266, 282, 288, 481, 535
LmnI GCTCC 2 cut(s) 436, 450
LweI GCATC 5 cut(s) 111, 133, 268, 544, 587
MaeII ACGT 4 cut(s) 213, 294, 411, 441
MalI GATC 5 cut(s) 268, 284, 290, 483, 537
MbiI CCGCTC 1 cut(s) 90
MboI GATC 5 cut(s) 266, 282, 288, 481, 535
MboII GAAGA 4 cut(s) 49, 109, 202, 343
MhlI GDGCHC 2 cut(s) 219, 441
MluCI AATT 2 cut(s) 113, 182
Mph1103I ATGCAT 1 cut(s) 602
MroXI GAANNNNTTC 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 3 cut(s) 222, 249, 384
MspR9I CCNGG 2 cut(s) 249, 333
MvaI CCWGG 1 cut(s) 333
MvnI CGCG 2 cut(s) 84, 563
NciI CCSGG 1 cut(s) 249
NdeII GATC 5 cut(s) 266, 282, 288, 481, 535
NlaIII CATG 2 cut(s) 488, 595
NlaIV GGNNCC 1 cut(s) 465
NotI GCGGCCGC 1 cut(s) 85
NsbI TGCGCA 1 cut(s) 152
NsiI ATGCAT 1 cut(s) 602
PagI TCATGA 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 4 cut(s) 20, 63, 252, 569
PkrI GCNGC 3 cut(s) 86, 89, 371
PmaCI CACGTG 1 cut(s) 442
PmlI CACGTG 1 cut(s) 442
Ppu21I YACGTR 3 cut(s) 214, 412, 442
Psp6I CCWGG 1 cut(s) 331
PspCI CACGTG 1 cut(s) 442
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 1 cut(s) 502
RsaI GTAC 5 cut(s) 212, 410, 479, 551, 587
RsaNI GTAC 5 cut(s) 211, 409, 478, 550, 586
SacII CCGCGG 1 cut(s) 564
SatI GCNGC 3 cut(s) 85, 88, 370
Sau3AI GATC 5 cut(s) 266, 282, 288, 481, 535
Sau96I GGNCC 1 cut(s) 502
ScrFI CCNGG 2 cut(s) 249, 333
SduI GDGCHC 2 cut(s) 219, 441
SfaNI GCATC 5 cut(s) 111, 133, 268, 544, 587
Sfr303I CCGCGG 1 cut(s) 564
SgrBI CCGCGG 1 cut(s) 564
SinI GGWCC 1 cut(s) 502
Sse9I AATT 2 cut(s) 113, 182
SsiI CCGC 8 cut(s) 84, 88, 258, 346, 370, 445, 561, 563
SspI AATATT 2 cut(s) 158, 174
StyD4I CCNGG 2 cut(s) 247, 331
TaaI ACNGT 1 cut(s) 506
TaiI ACGT 4 cut(s) 216, 297, 414, 444
TaqI TCGA 4 cut(s) 42, 51, 309, 423
TasI AATT 2 cut(s) 113, 182
TatI WGTACW 1 cut(s) 585
TauI GCSGC 3 cut(s) 87, 90, 372
TfiI GAWTC 4 cut(s) 20, 63, 252, 569
TscAI CASTG 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 537
TspRI CASTG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.