FvH4_1g11472

Rho (Ras homology) subfamily of Ras-like small GTPases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018774
Physical Location & Seq
Reverse (-)
6259747 .. 6260790
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11472.t1

Sequence Viewer

Length: 741 bp
ATGACGGCGACGCCGACCAAGTCTTTTCAAAAGCTCCACCCACGGCGTTCTGTGGTGGCCGAGGGTGTTTTAGAGGGGCATGGTTCGGCGAATATCGTCGCGCTCCGTCACCGGAGGGGTCGAGAAAAACTTCTTTCTCCTCCAATATCCGAACGCCACGCTGTCTATGACACTCTTCACACTCGCTCTCACTCTGATCACACACTCTTCTCTCGGCAGAGCTTCAGAGCTTCTCCACTGGCGTCCTCTGCAACCCTACTCAGCCGAATCCTCACCCGCGCCTCAAACCCCATCCCCATCCCCTCCTCGATCCGCTCCTTCTCCTCCACATTCTACCAAATCGTGAAGCCATCGCCGCAGCGCGCGCGTGACGACGCCCCCGACCACCTCCACCGCTCCGGTCTTCTCATCAACGACGAGGACGACGCGCTCTACCTCACGAAATCCATGCCGGGGCTCGGCGTTGAAGACATCCACGTGGAGATTAATAAGAACAACACTCTCATCATCAAAGGCTCCCCCAGCGGCTACGAGACGGTTCTTCACCTCCCGCCGTCGTGCCGGAAGGAGGAGGGTCGGTTCATTATGAAGAACGGTGTGCTGAGGGTGAAGGTGCCCAAGGAGCATAAGCCCAATGGCCCAAATGACCAGGCCCAATCGGGTCAAAGCCCATGTATAGCTGAGGAGTACAAGAGTGGTGATGCTGTGCTCATTGTGGGGTATCAGCTCCAAGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632 Ras

Protein Analysis

247

Amino Acids

27.23

Weight (kDa)

9.36

Isoelectric Point (pI)

59.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018774)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11472
malus_domestica MD13G1120200.v1.1
rosa_chinensis RchiOBHm_Chr2g0099071
rosa_laevigata RLG00000016843
rosa_samantha Rh2AG125500 Rh2BG128800 Rh2CG129800 Rh2DG130000
rosa_wichuraiana Rw2G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 613
AccBSI CCGCTC 2 cut(s) 315, 396
AccII CGCG 6 cut(s) 101, 279, 363, 365, 367, 428
AciI CCGC 6 cut(s) 277, 313, 356, 394, 525, 551
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 208
AcvI CACGTG 1 cut(s) 478
AcyI GRCGYC 3 cut(s) 11, 242, 375
AfaI GTAC 1 cut(s) 689
AfiI CCNNNNNNNGG 3 cut(s) 453, 458, 568
AgsI TTSAA 2 cut(s) 29, 467
AjnI CCWGG 1 cut(s) 648
AloI GAACNNNNNNTCC 2 cut(s) 563, 595
AluBI AGCT 5 cut(s) 34, 222, 230, 680, 727
AluI AGCT 5 cut(s) 34, 222, 230, 680, 727
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 1 cut(s) 527
AlwI GGATC 1 cut(s) 304
AoxI GGCC 3 cut(s) 57, 637, 651
ApeKI GCWGC 1 cut(s) 358
AseI ATTAAT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 6 cut(s) 103, 281, 363, 365, 367, 430
AspS9I GGNCC 2 cut(s) 638, 652
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 5 cut(s) 101, 265, 536, 619, 710
BaeGI GKGCMC 1 cut(s) 618
BanI GGYRCC 1 cut(s) 613
BanII GRGCYC 1 cut(s) 459
BbrPI CACGTG 1 cut(s) 478
BbsI GAAGAC 2 cut(s) 395, 474
Bbv12I GWGCWC 1 cut(s) 711
BbvCI CCTCAGC 2 cut(s) 602, 681
BbvI GCAGC 1 cut(s) 370
BccI CCATC 3 cut(s) 299, 305, 358
BceAI ACGGC 3 cut(s) 21, 59, 538
BcgI CGANNNNNNTGC 2 cut(s) 430, 464
BciT130I CCWGG 1 cut(s) 650
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 527
BisI GCNGC 3 cut(s) 356, 359, 526
BlsI GCNGC 3 cut(s) 357, 360, 527
Bme1390I CCNGG 2 cut(s) 453, 650
BmgT120I GGNCC 2 cut(s) 638, 652
BmiI GGNNCC 2 cut(s) 517, 615
BmrFI CCNGG 2 cut(s) 453, 650
BmsI GCATC 1 cut(s) 691
BpiI GAAGAC 2 cut(s) 395, 474
Bpu10I CCTNAGC 2 cut(s) 602, 681
BpuMI CCSGG 1 cut(s) 453
BsaAI YACGTR 1 cut(s) 478
BsaHI GRCGYC 3 cut(s) 11, 242, 375
BsaJI CCNNGG 4 cut(s) 41, 60, 452, 618
BsaWI WCCGGW 2 cut(s) 111, 398
BsaXI ACNNNNNCTCC 2 cut(s) 563, 593
Bsc4I CCNNNNNNNGG 3 cut(s) 453, 458, 568
Bse1I ACTGG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 650
BseDI CCNNGG 4 cut(s) 41, 60, 452, 618
BseGI GGATG 3 cut(s) 291, 297, 471
BseLI CCNNNNNNNGG 3 cut(s) 453, 458, 568
BseMII CTCAG 3 cut(s) 274, 593, 672
BseNI ACTGG 1 cut(s) 243
BsePI GCGCGC 2 cut(s) 361, 363
BseRI GAGGAG 5 cut(s) 129, 295, 313, 584, 698
BseSI GKGCMC 1 cut(s) 618
BseXI GCAGC 1 cut(s) 370
BseYI CCCAGC 1 cut(s) 521
Bsh1236I CGCG 6 cut(s) 101, 279, 363, 365, 367, 428
BshFI GGCC 3 cut(s) 59, 639, 653
BshNI GGYRCC 1 cut(s) 613
BsiHKAI GWGCWC 1 cut(s) 711
BsiSI CCGG 4 cut(s) 112, 399, 452, 562
BslI CCNNNNNNNGG 3 cut(s) 453, 458, 568
BsmAI GTCTC 1 cut(s) 527
BsmBI CGTCTC 1 cut(s) 527
BsnI GGCC 3 cut(s) 59, 639, 653
Bsp1286I GDGCHC 3 cut(s) 459, 618, 711
Bsp143I GATC 2 cut(s) 196, 309
BspACI CCGC 6 cut(s) 277, 313, 356, 394, 525, 551
BspANI GGCC 3 cut(s) 59, 639, 653
BspCNI CTCAG 3 cut(s) 273, 594, 673
BspFNI CGCG 6 cut(s) 101, 279, 363, 365, 367, 428
BspLI GGNNCC 2 cut(s) 517, 615
BspPI GGATC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 613
BsrBI CCGCTC 2 cut(s) 315, 396
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 4 cut(s) 41, 60, 452, 618
BssHII GCGCGC 2 cut(s) 361, 363
BssMI GATC 2 cut(s) 196, 309
BssNI GRCGYC 3 cut(s) 11, 242, 375
BssT1I CCWWGG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 650
Bst4CI ACNGT 2 cut(s) 538, 596
Bst6I CTCTTC 2 cut(s) 180, 212
BstACI GRCGYC 3 cut(s) 11, 242, 375
BstBAI YACGTR 1 cut(s) 478
BstC8I GCNNGC 2 cut(s) 363, 365
BstDEI CTNAG 3 cut(s) 260, 602, 681
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 3 cut(s) 291, 297, 471
BstFNI CGCG 6 cut(s) 101, 279, 363, 365, 367, 428
BstHHI GCGC 6 cut(s) 103, 281, 363, 365, 367, 430
BstKTI GATC 2 cut(s) 199, 312
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 2 cut(s) 196, 309
BstMWI GCNNNNNNNGC 5 cut(s) 248, 355, 364, 522, 622
BstNI CCWGG 1 cut(s) 650
BstSCI CCNGG 2 cut(s) 451, 648
BstSLI GKGCMC 1 cut(s) 618
BstUI CGCG 6 cut(s) 101, 279, 363, 365, 367, 428
BstV1I GCAGC 1 cut(s) 370
BstV2I GAAGAC 2 cut(s) 395, 474
BsuRI GGCC 3 cut(s) 59, 639, 653
BtgI CCRYGG 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 3 cut(s) 291, 297, 471
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 363, 365
CfoI GCGC 6 cut(s) 103, 281, 363, 365, 367, 430
Cfr13I GGNCC 2 cut(s) 638, 652
CseI GACGC 4 cut(s) 19, 231, 383, 434
Csp6I GTAC 1 cut(s) 688
CviAII CATG 3 cut(s) 80, 448, 672
CviQI GTAC 1 cut(s) 688
DdeI CTNAG 3 cut(s) 260, 602, 681
DpnI GATC 2 cut(s) 198, 311
DpnII GATC 2 cut(s) 196, 309
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 2 cut(s) 180, 212
EarI CTCTTC 2 cut(s) 180, 212
Eco130I CCWWGG 1 cut(s) 618
Eco24I GRGCYC 1 cut(s) 459
Eco57I CTGAAG 1 cut(s) 208
Eco72I CACGTG 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 648
EcoT14I CCWWGG 1 cut(s) 618
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 618
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 3 cut(s) 83, 451, 675
FaiI YATR 7 cut(s) 81, 168, 449, 587, 627, 673, 677
FatI CATG 3 cut(s) 79, 447, 671
FauI CCCGC 2 cut(s) 284, 558
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 356, 359, 526
FokI GGATG 3 cut(s) 278, 284, 458
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 3 cut(s) 356, 359, 526
GlaI GCGC 6 cut(s) 102, 280, 362, 364, 366, 429
GluI GCNGC 3 cut(s) 356, 359, 526
GsaI CCCAGC 1 cut(s) 525
HaeIII GGCC 3 cut(s) 59, 639, 653
HapII CCGG 4 cut(s) 112, 399, 452, 562
HgaI GACGC 4 cut(s) 19, 231, 383, 434
HhaI GCGC 6 cut(s) 103, 281, 363, 365, 367, 430
Hin1I GRCGYC 3 cut(s) 11, 242, 375
Hin1II CATG 3 cut(s) 83, 451, 675
Hin6I GCGC 6 cut(s) 101, 279, 361, 363, 365, 428
HinP1I GCGC 6 cut(s) 101, 279, 361, 363, 365, 428
HinfI GANTC 1 cut(s) 267
HpaII CCGG 4 cut(s) 112, 399, 452, 562
HphI GGTGA 5 cut(s) 101, 265, 536, 619, 710
Hpy188I TCNGA 3 cut(s) 151, 196, 227
Hpy188III TCNNGA 3 cut(s) 122, 343, 439
Hpy99I CGWCG 6 cut(s) 13, 101, 377, 419, 428, 559
HpyAV CCTTC 3 cut(s) 328, 559, 604
HpyCH4III ACNGT 2 cut(s) 538, 596
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 5 cut(s) 248, 355, 364, 522, 622
HpyF3I CTNAG 3 cut(s) 260, 602, 681
HpySE526I ACGT 1 cut(s) 477
Hsp92I GRCGYC 3 cut(s) 11, 242, 375
Hsp92II CATG 3 cut(s) 83, 451, 675
HspAI GCGC 6 cut(s) 101, 279, 361, 363, 365, 428
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 196, 309
LmnI GCTCC 7 cut(s) 39, 108, 320, 401, 521, 622, 732
LpnPI CCDG 8 cut(s) 125, 224, 412, 465, 535, 575, 635, 662
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 1 cut(s) 691
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 2 cut(s) 107, 368
MalI GATC 2 cut(s) 198, 311
MauBI CGCGCGCG 1 cut(s) 363
MbiI CCGCTC 2 cut(s) 315, 396
MboI GATC 2 cut(s) 196, 309
MboII GAAGA 6 cut(s) 167, 199, 395, 479, 533, 601
MhlI GDGCHC 3 cut(s) 459, 618, 711
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 1 cut(s) 476
MspA1I CMGCKG 1 cut(s) 525
MspI CCGG 4 cut(s) 112, 399, 452, 562
MspR9I CCNGG 2 cut(s) 453, 650
MvaI CCWGG 1 cut(s) 650
MvnI CGCG 6 cut(s) 101, 279, 363, 365, 367, 428
MwoI GCNNNNNNNGC 5 cut(s) 248, 355, 364, 522, 622
NciI CCSGG 1 cut(s) 453
NdeII GATC 2 cut(s) 196, 309
NlaIII CATG 3 cut(s) 83, 451, 675
NlaIV GGNNCC 2 cut(s) 517, 615
NmeAIII GCCGAG 3 cut(s) 85, 193, 438
NmuCI GTSAC 2 cut(s) 107, 368
PauI GCGCGC 2 cut(s) 361, 363
PcsI WCGNNNNNNNCGW 3 cut(s) 11, 378, 420
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 267
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 3 cut(s) 357, 360, 527
PmaCI CACGTG 1 cut(s) 478
PmlI CACGTG 1 cut(s) 478
Ppu21I YACGTR 1 cut(s) 478
PshBI ATTAAT 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 648
PspCI CACGTG 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 2 cut(s) 517, 615
PspPI GGNCC 2 cut(s) 638, 652
PsyI GACNNNGTC 1 cut(s) 19
PteI GCGCGC 2 cut(s) 361, 363
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
RseI CAYNNNNRTG 1 cut(s) 476
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 3 cut(s) 356, 359, 526
Sau3AI GATC 2 cut(s) 196, 309
Sau96I GGNCC 2 cut(s) 638, 652
ScrFI CCNGG 2 cut(s) 453, 650
SduI GDGCHC 3 cut(s) 459, 618, 711
SfaNI GCATC 1 cut(s) 691
SmiMI CAYNNNNRTG 1 cut(s) 476
SsiI CCGC 6 cut(s) 277, 313, 356, 394, 525, 551
StyD4I CCNGG 2 cut(s) 451, 648
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 2 cut(s) 538, 596
TaiI ACGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 121, 308
TatI WGTACW 1 cut(s) 687
TauI GCSGC 2 cut(s) 358, 528
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 2 cut(s) 107, 368
TseI GCWGC 1 cut(s) 358
Tsp45I GTSAC 2 cut(s) 107, 368
TspDTI ATGAA 2 cut(s) 571, 602
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 243
Tth111I GACNNNGTC 1 cut(s) 19
VspI ATTAAT 1 cut(s) 486
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.