Rw2G009670

Rho (Ras homology) subfamily of Ras-like small GTPases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018774
Physical Location & Seq
Reverse (-)
9828071 .. 9828800
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G009670.1

Sequence Viewer

Length: 501 bp
ATGGCGTCCTCTGCAACCCTAATCAACCGATTCCTCCTCACCCGAACCTCATCAAACCCCATCATCCCCTCCTCGATTCGCTCGCTCTCCTCCACACTCTACTGGATCGTGAAGCCAGTGCCGCCGCGCGCGCGTGACGACGCCCCCGACGACCTGCACCGCTCCGGTCTGCTCATCCAAGACGAGGACGACGCGCTCTACCTCCAGAAGTCGATGCCGGGCCTCGGAAAAGATGACGTCGACGTCGAGATAAGTCCCAAGCGCAACACTCTCATCATCACAGGCGAGCCCGGAGGCTACAAGGCGCTTCTTCACCTTCCGCCGTCGTGCCAGGCGGAGGAGGCCGTGTCCAAAATGGAGAATGGTCTGCTGAGGGTGCTTGTGCCAAAGACTAAGCCCAATGGAGGAGGCCCAACTCAGGAGGCCCAATGGGGTCCACCTCAGCACTACAAGCCTGGTGACTCGATCCTCATGGTCGGGTACCTCCGCCAAGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632 Ras

Protein Analysis

166

Amino Acids

18.17

Weight (kDa)

5.92

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018774)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11472
malus_domestica MD13G1120200.v1.1
rosa_chinensis RchiOBHm_Chr2g0099071
rosa_laevigata RLG00000016843
rosa_samantha Rh2AG125500 Rh2BG128800 Rh2CG129800 Rh2DG130000
rosa_wichuraiana Rw2G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 2 cut(s) 240, 246
Acc36I ACCTGC 1 cut(s) 162
Acc65I GGTACC 1 cut(s) 480
AccB1I GGYRCC 1 cut(s) 480
AccBSI CCGCTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 240
AccII CGCG 5 cut(s) 127, 129, 131, 133, 194
AciI CCGC 6 cut(s) 122, 125, 160, 320, 335, 487
AclWI GGATC 2 cut(s) 113, 460
AcyI GRCGYC 4 cut(s) 5, 141, 237, 243
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 5 cut(s) 184, 224, 337, 404, 418
AjnI CCWGG 2 cut(s) 330, 454
AlwI GGATC 2 cut(s) 113, 460
AoxI GGCC 4 cut(s) 220, 342, 409, 423
Asp718I GGTACC 1 cut(s) 480
AspLEI GCGC 6 cut(s) 129, 131, 133, 196, 264, 307
AspS9I GGNCC 4 cut(s) 220, 410, 424, 434
AsuC2I CCSGG 2 cut(s) 219, 291
AsuHPI GGTGA 3 cut(s) 31, 305, 470
AvaII GGWCC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 480
BanII GRGCYC 1 cut(s) 291
BbvCI CCTCAGC 2 cut(s) 371, 441
BccI CCATC 1 cut(s) 68
BceAI ACGGC 2 cut(s) 307, 329
BciT130I CCWGG 2 cut(s) 332, 456
BcnI CCSGG 2 cut(s) 219, 291
BfoI RGCGCY 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 162
BisI GCNGC 2 cut(s) 122, 125
BlsI GCNGC 2 cut(s) 123, 126
Bme1390I CCNGG 4 cut(s) 219, 291, 332, 456
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 4 cut(s) 220, 410, 424, 434
BmiI GGNNCC 2 cut(s) 435, 482
BmrFI CCNGG 4 cut(s) 219, 291, 332, 456
BmsI GCATC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 188
Bpu10I CCTNAGC 2 cut(s) 371, 441
BpuMI CCSGG 2 cut(s) 219, 291
BsaHI GRCGYC 4 cut(s) 5, 141, 237, 243
BsaJI CCNNGG 1 cut(s) 223
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 224, 337, 404, 418
Bse1I ACTGG 2 cut(s) 107, 116
BseBI CCWGG 2 cut(s) 332, 456
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 63, 174
BseLI CCNNNNNNNGG 5 cut(s) 184, 224, 337, 404, 418
BseMII CTCAG 3 cut(s) 362, 431, 455
BseNI ACTGG 2 cut(s) 107, 116
BsePI GCGCGC 2 cut(s) 127, 129
BseRI GAGGAG 5 cut(s) 26, 61, 79, 353, 420
BsgI GTGCAG 1 cut(s) 140
Bsh1236I CGCG 5 cut(s) 127, 129, 131, 133, 194
BshFI GGCC 4 cut(s) 222, 344, 411, 425
BshNI GGYRCC 1 cut(s) 480
BsiSI CCGG 3 cut(s) 165, 218, 291
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 5 cut(s) 184, 224, 337, 404, 418
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 4 cut(s) 222, 344, 411, 425
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 105, 465
BspACI CCGC 6 cut(s) 122, 125, 160, 320, 335, 487
BspANI GGCC 4 cut(s) 222, 344, 411, 425
BspCNI CTCAG 3 cut(s) 363, 430, 454
BspFNI CGCG 5 cut(s) 127, 129, 131, 133, 194
BspLI GGNNCC 2 cut(s) 435, 482
BspMI ACCTGC 1 cut(s) 162
BspPI GGATC 2 cut(s) 113, 460
BspT107I GGYRCC 1 cut(s) 480
BsrBI CCGCTC 1 cut(s) 162
BsrI ACTGG 2 cut(s) 107, 116
BssECI CCNNGG 1 cut(s) 223
BssHII GCGCGC 2 cut(s) 127, 129
BssMI GATC 2 cut(s) 105, 465
BssNI GRCGYC 4 cut(s) 5, 141, 237, 243
Bst2UI CCWGG 2 cut(s) 332, 456
BstACI GRCGYC 4 cut(s) 5, 141, 237, 243
BstC8I GCNNGC 4 cut(s) 83, 129, 131, 287
BstDEI CTNAG 4 cut(s) 371, 393, 417, 441
BstF5I GGATG 2 cut(s) 63, 174
BstFNI CGCG 5 cut(s) 127, 129, 131, 133, 194
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 6 cut(s) 129, 131, 133, 196, 264, 307
BstKTI GATC 2 cut(s) 108, 468
BstMBI GATC 2 cut(s) 105, 465
BstMWI GCNNNNNNNGC 6 cut(s) 11, 121, 130, 341, 376, 451
BstNI CCWGG 2 cut(s) 332, 456
BstSCI CCNGG 4 cut(s) 217, 289, 330, 454
BstUI CGCG 5 cut(s) 127, 129, 131, 133, 194
BsuRI GGCC 4 cut(s) 222, 344, 411, 425
BtsCI GGATG 2 cut(s) 63, 174
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 162
Cac8I GCNNGC 4 cut(s) 83, 129, 131, 287
CfoI GCGC 6 cut(s) 129, 131, 133, 196, 264, 307
Cfr13I GGNCC 4 cut(s) 220, 410, 424, 434
CseI GACGC 2 cut(s) 149, 200
Csp6I GTAC 1 cut(s) 481
CviAII CATG 1 cut(s) 472
CviJI RGCY 9 cut(s) 115, 222, 289, 297, 344, 397, 411, 425, 454
CviKI_1 RGCY 9 cut(s) 115, 222, 289, 297, 344, 397, 411, 425, 454
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 4 cut(s) 371, 393, 417, 441
DpnI GATC 2 cut(s) 107, 467
DpnII GATC 2 cut(s) 105, 465
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EciI GGCGGA 3 cut(s) 309, 350, 476
Eco24I GRGCYC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 330, 454
EcoT38I GRGCYC 1 cut(s) 291
FaeI CATG 1 cut(s) 475
FaiI YATR 1 cut(s) 473
FaqI GGGAC 1 cut(s) 240
FatI CATG 1 cut(s) 471
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 122, 125
FokI GGATG 2 cut(s) 50, 161
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 2 cut(s) 122, 125
GlaI GCGC 6 cut(s) 128, 130, 132, 195, 263, 306
GluI GCNGC 2 cut(s) 122, 125
GsuI CTGGAG 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 4 cut(s) 222, 344, 411, 425
HapII CCGG 3 cut(s) 165, 218, 291
HgaI GACGC 2 cut(s) 149, 200
HhaI GCGC 6 cut(s) 129, 131, 133, 196, 264, 307
Hin1I GRCGYC 4 cut(s) 5, 141, 237, 243
Hin1II CATG 1 cut(s) 475
Hin6I GCGC 6 cut(s) 127, 129, 131, 194, 262, 305
HinP1I GCGC 6 cut(s) 127, 129, 131, 194, 262, 305
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 3 cut(s) 30, 76, 461
HpaII CCGG 3 cut(s) 165, 218, 291
HphI GGTGA 3 cut(s) 31, 305, 470
Hpy166II GTNNAC 2 cut(s) 241, 437
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 4 cut(s) 109, 205, 247, 419
Hpy8I GTNNAC 2 cut(s) 241, 437
Hpy99I CGWCG 7 cut(s) 143, 152, 194, 242, 245, 248, 328
HpyAV CCTTC 1 cut(s) 326
HpyCH4IV ACGT 2 cut(s) 237, 243
HpyCH4V TGCA 2 cut(s) 14, 157
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 121, 130, 341, 376, 451
HpyF3I CTNAG 4 cut(s) 371, 393, 417, 441
HpySE526I ACGT 2 cut(s) 237, 243
Hsp92I GRCGYC 4 cut(s) 5, 141, 237, 243
Hsp92II CATG 1 cut(s) 475
HspAI GCGC 6 cut(s) 127, 129, 131, 194, 262, 305
KpnI GGTACC 1 cut(s) 484
Kzo9I GATC 2 cut(s) 105, 465
LmnI GCTCC 1 cut(s) 167
LweI GCATC 1 cut(s) 204
MaeII ACGT 2 cut(s) 237, 243
MaeIII GTNAC 2 cut(s) 134, 458
MalI GATC 2 cut(s) 107, 467
MauBI CGCGCGCG 2 cut(s) 127, 129
MbiI CCGCTC 1 cut(s) 162
MboI GATC 2 cut(s) 105, 465
MboII GAAGA 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 291
MlyI GAGTC 1 cut(s) 455
MspI CCGG 3 cut(s) 165, 218, 291
MspR9I CCNGG 4 cut(s) 219, 291, 332, 456
MvaI CCWGG 2 cut(s) 332, 456
MvnI CGCG 5 cut(s) 127, 129, 131, 133, 194
MwoI GCNNNNNNNGC 6 cut(s) 11, 121, 130, 341, 376, 451
NciI CCSGG 2 cut(s) 219, 291
NdeII GATC 2 cut(s) 105, 465
NlaIII CATG 1 cut(s) 475
NlaIV GGNNCC 2 cut(s) 435, 482
NmuCI GTSAC 2 cut(s) 134, 458
PauI GCGCGC 2 cut(s) 127, 129
PcsI WCGNNNNNNNCGW 3 cut(s) 144, 147, 243
PfeI GAWTC 2 cut(s) 30, 76
PkrI GCNGC 2 cut(s) 123, 126
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
Psp6I CCWGG 2 cut(s) 330, 454
PspGI CCWGG 2 cut(s) 330, 454
PspN4I GGNNCC 2 cut(s) 435, 482
PspPI GGNCC 4 cut(s) 220, 410, 424, 434
PteI GCGCGC 2 cut(s) 127, 129
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SalI GTCGAC 1 cut(s) 239
SatI GCNGC 2 cut(s) 122, 125
Sau3AI GATC 2 cut(s) 105, 465
Sau96I GGNCC 4 cut(s) 220, 410, 424, 434
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 4 cut(s) 219, 291, 332, 456
SduI GDGCHC 1 cut(s) 291
SetI ASST 8 cut(s) 50, 156, 204, 240, 246, 318, 442, 486
SfaNI GCATC 1 cut(s) 204
SgrDI CGTCGACG 1 cut(s) 239
SinI GGWCC 1 cut(s) 434
SsiI CCGC 6 cut(s) 122, 125, 160, 320, 335, 487
StyD4I CCNGG 4 cut(s) 217, 289, 330, 454
TaiI ACGT 2 cut(s) 240, 246
TaqI TCGA 5 cut(s) 74, 212, 240, 246, 464
TauI GCSGC 2 cut(s) 124, 127
TfiI GAWTC 2 cut(s) 30, 76
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 2 cut(s) 134, 458
Tsp45I GTSAC 2 cut(s) 134, 458
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 240
ZraI GACGTC 2 cut(s) 238, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.