Rh2BG128800

Rho (Ras homology) subfamily of Ras-like small GTPases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018774
Physical Location & Seq
Reverse (-)
10997809 .. 10998309
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG128800.1

Sequence Viewer

Length: 501 bp
ATGGCGTCCTCTGCAACCCTAATCAACCGATTCCTCCTCACCCGAACCTCATCAAACCCCATCATCCCCTCCTCGATTCGCTCGCTCTCCTCCACACTCTACTGGATCGTGAAGCCAGTGCCGCAGCGCGCGCGTGACGACGCCCCCGACGACCTGCACCGCTCCGGTCTGCTCATCCAAGACGAGGACGACGCGCTCTACCTCCAGAAGTCGATGCCGGGCCTCGGAAAAGATGACGTCGACGTCGAGATTAGTCCCAAGCGCAACACTCTCATCATCACAGGCGAGCCCGGAGGCTACAAGGCGCTTCTTCACCTTCCGCCGTCGTGCCTGGCGGAGGAGGCCGTGTCCAAAATGGAGAATGGTCTGCTGAGGGTGCTTGTGCCCAAGACTAAGCCCAATGGAGCAGGCCCAACTCAGGAGGCCCAATGGGGTCCACCTGGGCACTACAAACCTGGTGACGCGATCCTCATGGTCGGGTACCTCTGCCAAGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632 Ras

Protein Analysis

166

Amino Acids

18.06

Weight (kDa)

5.62

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018774)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11472
malus_domestica MD13G1120200.v1.1
rosa_chinensis RchiOBHm_Chr2g0099071
rosa_laevigata RLG00000016843
rosa_samantha Rh2AG125500 Rh2BG128800 Rh2CG129800 Rh2DG130000
rosa_wichuraiana Rw2G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 2 cut(s) 240, 246
Acc36I ACCTGC 1 cut(s) 162
Acc65I GGTACC 1 cut(s) 480
AccB1I GGYRCC 1 cut(s) 480
AccBSI CCGCTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 240
AccII CGCG 5 cut(s) 129, 131, 133, 194, 464
AciI CCGC 4 cut(s) 122, 160, 320, 335
AclWI GGATC 2 cut(s) 113, 460
AcyI GRCGYC 4 cut(s) 5, 141, 237, 243
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 4 cut(s) 184, 224, 337, 418
AjnI CCWGG 3 cut(s) 330, 439, 454
AlwI GGATC 2 cut(s) 113, 460
AoxI GGCC 4 cut(s) 220, 342, 409, 423
ApeKI GCWGC 1 cut(s) 124
Asp718I GGTACC 1 cut(s) 480
AspLEI GCGC 6 cut(s) 129, 131, 133, 196, 264, 307
AspS9I GGNCC 4 cut(s) 220, 410, 424, 434
AsuC2I CCSGG 2 cut(s) 219, 291
AsuHPI GGTGA 3 cut(s) 31, 305, 470
AvaII GGWCC 1 cut(s) 434
BaeGI GKGCMC 2 cut(s) 387, 447
BanI GGYRCC 1 cut(s) 480
BanII GRGCYC 1 cut(s) 291
BbvCI CCTCAGC 1 cut(s) 371
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 68
BceAI ACGGC 2 cut(s) 307, 329
BciT130I CCWGG 3 cut(s) 332, 441, 456
BcnI CCSGG 2 cut(s) 219, 291
BfoI RGCGCY 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 162
BisI GCNGC 2 cut(s) 122, 125
BlsI GCNGC 2 cut(s) 123, 126
Bme1390I CCNGG 5 cut(s) 219, 291, 332, 441, 456
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 4 cut(s) 220, 410, 424, 434
BmiI GGNNCC 2 cut(s) 435, 482
BmrFI CCNGG 5 cut(s) 219, 291, 332, 441, 456
BmsI GCATC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 371
BpuMI CCSGG 2 cut(s) 219, 291
BsaHI GRCGYC 4 cut(s) 5, 141, 237, 243
BsaJI CCNNGG 2 cut(s) 223, 440
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 224, 337, 418
Bse1I ACTGG 2 cut(s) 107, 116
BseBI CCWGG 3 cut(s) 332, 441, 456
BseDI CCNNGG 2 cut(s) 223, 440
BseGI GGATG 2 cut(s) 63, 174
BseLI CCNNNNNNNGG 4 cut(s) 184, 224, 337, 418
BseMII CTCAG 2 cut(s) 362, 431
BseNI ACTGG 2 cut(s) 107, 116
BsePI GCGCGC 2 cut(s) 127, 129
BseRI GAGGAG 4 cut(s) 26, 61, 79, 353
BseSI GKGCMC 2 cut(s) 387, 447
BseXI GCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 140
Bsh1236I CGCG 5 cut(s) 129, 131, 133, 194, 464
BshFI GGCC 4 cut(s) 222, 344, 411, 425
BshNI GGYRCC 1 cut(s) 480
BsiSI CCGG 3 cut(s) 165, 218, 291
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 4 cut(s) 184, 224, 337, 418
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 4 cut(s) 222, 344, 411, 425
Bsp1286I GDGCHC 3 cut(s) 291, 387, 447
Bsp143I GATC 2 cut(s) 105, 465
BspACI CCGC 4 cut(s) 122, 160, 320, 335
BspANI GGCC 4 cut(s) 222, 344, 411, 425
BspCNI CTCAG 2 cut(s) 363, 430
BspFNI CGCG 5 cut(s) 129, 131, 133, 194, 464
BspLI GGNNCC 2 cut(s) 435, 482
BspMI ACCTGC 1 cut(s) 162
BspPI GGATC 2 cut(s) 113, 460
BspT107I GGYRCC 1 cut(s) 480
BsrBI CCGCTC 1 cut(s) 162
BsrI ACTGG 2 cut(s) 107, 116
BssECI CCNNGG 2 cut(s) 223, 440
BssHII GCGCGC 2 cut(s) 127, 129
BssMI GATC 2 cut(s) 105, 465
BssNI GRCGYC 4 cut(s) 5, 141, 237, 243
Bst2UI CCWGG 3 cut(s) 332, 441, 456
BstACI GRCGYC 4 cut(s) 5, 141, 237, 243
BstC8I GCNNGC 5 cut(s) 83, 129, 131, 287, 409
BstDEI CTNAG 3 cut(s) 371, 393, 417
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 63, 174
BstFNI CGCG 5 cut(s) 129, 131, 133, 194, 464
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 6 cut(s) 129, 131, 133, 196, 264, 307
BstKTI GATC 2 cut(s) 108, 468
BstMBI GATC 2 cut(s) 105, 465
BstMWI GCNNNNNNNGC 5 cut(s) 11, 121, 130, 341, 376
BstNI CCWGG 3 cut(s) 332, 441, 456
BstSCI CCNGG 5 cut(s) 217, 289, 330, 439, 454
BstSLI GKGCMC 2 cut(s) 387, 447
BstUI CGCG 5 cut(s) 129, 131, 133, 194, 464
BstV1I GCAGC 1 cut(s) 136
BsuRI GGCC 4 cut(s) 222, 344, 411, 425
BtsCI GGATG 2 cut(s) 63, 174
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 162
Cac8I GCNNGC 5 cut(s) 83, 129, 131, 287, 409
CfoI GCGC 6 cut(s) 129, 131, 133, 196, 264, 307
Cfr13I GGNCC 4 cut(s) 220, 410, 424, 434
CseI GACGC 3 cut(s) 149, 200, 470
CsiI ACCWGGT 1 cut(s) 454
Csp6I GTAC 1 cut(s) 481
CviAII CATG 1 cut(s) 472
CviJI RGCY 8 cut(s) 115, 222, 289, 297, 344, 397, 411, 425
CviKI_1 RGCY 8 cut(s) 115, 222, 289, 297, 344, 397, 411, 425
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 3 cut(s) 371, 393, 417
DpnI GATC 2 cut(s) 107, 467
DpnII GATC 2 cut(s) 105, 465
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EciI GGCGGA 2 cut(s) 309, 350
Eco24I GRGCYC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 434
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 330, 439, 454
EcoT38I GRGCYC 1 cut(s) 291
FaeI CATG 1 cut(s) 475
FaiI YATR 1 cut(s) 473
FaqI GGGAC 1 cut(s) 240
FatI CATG 1 cut(s) 471
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 122, 125
FokI GGATG 2 cut(s) 50, 161
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 2 cut(s) 122, 125
GlaI GCGC 6 cut(s) 128, 130, 132, 195, 263, 306
GluI GCNGC 2 cut(s) 122, 125
GsuI CTGGAG 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 4 cut(s) 222, 344, 411, 425
HapII CCGG 3 cut(s) 165, 218, 291
HgaI GACGC 3 cut(s) 149, 200, 470
HhaI GCGC 6 cut(s) 129, 131, 133, 196, 264, 307
Hin1I GRCGYC 4 cut(s) 5, 141, 237, 243
Hin1II CATG 1 cut(s) 475
Hin6I GCGC 6 cut(s) 127, 129, 131, 194, 262, 305
HinP1I GCGC 6 cut(s) 127, 129, 131, 194, 262, 305
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 2 cut(s) 30, 76
HpaII CCGG 3 cut(s) 165, 218, 291
HphI GGTGA 3 cut(s) 31, 305, 470
Hpy166II GTNNAC 2 cut(s) 241, 437
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 4 cut(s) 109, 205, 247, 419
Hpy8I GTNNAC 2 cut(s) 241, 437
Hpy99I CGWCG 7 cut(s) 143, 152, 194, 242, 245, 248, 328
HpyAV CCTTC 1 cut(s) 326
HpyCH4IV ACGT 2 cut(s) 237, 243
HpyCH4V TGCA 2 cut(s) 14, 157
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 121, 130, 341, 376
HpyF3I CTNAG 3 cut(s) 371, 393, 417
HpySE526I ACGT 2 cut(s) 237, 243
Hsp92I GRCGYC 4 cut(s) 5, 141, 237, 243
Hsp92II CATG 1 cut(s) 475
HspAI GCGC 6 cut(s) 127, 129, 131, 194, 262, 305
KpnI GGTACC 1 cut(s) 484
Kzo9I GATC 2 cut(s) 105, 465
LmnI GCTCC 2 cut(s) 167, 404
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 204
MabI ACCWGGT 1 cut(s) 454
MaeII ACGT 2 cut(s) 237, 243
MaeIII GTNAC 2 cut(s) 134, 458
MalI GATC 2 cut(s) 107, 467
MauBI CGCGCGCG 1 cut(s) 129
MbiI CCGCTC 1 cut(s) 162
MboI GATC 2 cut(s) 105, 465
MboII GAAGA 1 cut(s) 302
MhlI GDGCHC 3 cut(s) 291, 387, 447
MspI CCGG 3 cut(s) 165, 218, 291
MspR9I CCNGG 5 cut(s) 219, 291, 332, 441, 456
MvaI CCWGG 3 cut(s) 332, 441, 456
MvnI CGCG 5 cut(s) 129, 131, 133, 194, 464
MwoI GCNNNNNNNGC 5 cut(s) 11, 121, 130, 341, 376
NciI CCSGG 2 cut(s) 219, 291
NdeII GATC 2 cut(s) 105, 465
NlaIII CATG 1 cut(s) 475
NlaIV GGNNCC 2 cut(s) 435, 482
NmuCI GTSAC 2 cut(s) 134, 458
PauI GCGCGC 2 cut(s) 127, 129
PcsI WCGNNNNNNNCGW 3 cut(s) 144, 147, 243
PfeI GAWTC 2 cut(s) 30, 76
PkrI GCNGC 2 cut(s) 123, 126
Psp6I CCWGG 3 cut(s) 330, 439, 454
PspGI CCWGG 3 cut(s) 330, 439, 454
PspN4I GGNNCC 2 cut(s) 435, 482
PspPI GGNCC 4 cut(s) 220, 410, 424, 434
PteI GCGCGC 2 cut(s) 127, 129
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SalI GTCGAC 1 cut(s) 239
SatI GCNGC 2 cut(s) 122, 125
Sau3AI GATC 2 cut(s) 105, 465
Sau96I GGNCC 4 cut(s) 220, 410, 424, 434
ScrFI CCNGG 5 cut(s) 219, 291, 332, 441, 456
SduI GDGCHC 3 cut(s) 291, 387, 447
SetI ASST 9 cut(s) 50, 156, 204, 240, 246, 318, 442, 457, 486
SexAI ACCWGGT 1 cut(s) 454
SfaNI GCATC 1 cut(s) 204
SgrDI CGTCGACG 1 cut(s) 239
SinI GGWCC 1 cut(s) 434
SsiI CCGC 4 cut(s) 122, 160, 320, 335
StyD4I CCNGG 5 cut(s) 217, 289, 330, 439, 454
TaiI ACGT 2 cut(s) 240, 246
TaqI TCGA 4 cut(s) 74, 212, 240, 246
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 2 cut(s) 30, 76
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 2 cut(s) 134, 458
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 2 cut(s) 134, 458
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 434
XagI CCTNNNNNAGG 1 cut(s) 335
XmiI GTMKAC 1 cut(s) 240
ZraI GACGTC 2 cut(s) 238, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.