FvH4_1g12090

lactoylglutathione

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014637
Physical Location & Seq
Forward (+)
6609352 .. 6610684
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12090.t1

Sequence Viewer

Length: 579 bp
ATGCAGATTGAGATTGAGGAAGTTAACAGCTGCGAGGCACTGCCTTTGCTGTCACTCAATCATGTGTCTTTGCTATGCAGATCTGTGTGGGACTCTATGAGGTTCTATGAAGAAGTGTTGGGGTTTGTTCTCATCAAACGCCCCTCTTCTTTCAACTTCAATGGAGCTTGGTTGTATAACTATGGGATTGGGATACACTTGATTGAAAGTCCAGCAGCTATGGAGGACTGTGAACTCCGACCAATCAATCCCAAGGACAACCACATCTCCTTCCAATGCACTGATGTTGGACTTGTTAAGAGGAAGCTGCAAGAGATGGGGATGAGGTATGTTACTGCGGTGGTAGAGGATGATGGGGTCAAGGTCGACCAGGTGTTCTTCCATGACCCAGATGGGTACATGATCGAGCTCTGCAACTGTGAGAACATCCCCATCATTCCCGTCTCTTCTTGCGCCTTCAAGCCCAGAGTTAGCAGCTTCACTAAGGCACCAACCGCGTGCGGTCCAACTGCGTGTGGTTTCATGGAGACACTGATGATGGAAAGCTTGAGCCTGGACATGATGAACTTCTCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase

Protein Analysis

193

Amino Acids

21.67

Weight (kDa)

4.71

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxalase PF00903 19 - 137 6.9e-10 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12090 FvH4_1g12090
malus_domestica MD02G1110500.v1.1 MD15G1248200.v1.1
prunus_persica Prupe.7G165900_v2.0.a1
pyrus_communis pycom15g21850
rosa_chinensis RchiOBHm_Chr2g0099751
rosa_laevigata RLG00000016910
rosa_multiflora Rmu_sc0034974.1_g000001 Rmu_sc0034975.1_g000001
rosa_roxburghii Rroxscaffold_2G00142800
rosa_rugosa Rorug02G0082700
rosa_samantha Rh2AG132400 Rh2BG135200 Rh2CG136400 Rh2DG136900
rosa_wichuraiana Rw2G010240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 487
AccI GTMKAC 1 cut(s) 366
AccII CGCG 1 cut(s) 497
AciI CCGC 3 cut(s) 338, 495, 501
AfaI GTAC 1 cut(s) 398
AgsI TTSAA 4 cut(s) 154, 160, 206, 460
AjnI CCWGG 2 cut(s) 369, 552
AluBI AGCT 7 cut(s) 30, 167, 218, 307, 409, 477, 546
AluI AGCT 7 cut(s) 30, 167, 218, 307, 409, 477, 546
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 448, 521
ApeKI GCWGC 4 cut(s) 30, 215, 307, 474
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 503
AvaII GGWCC 1 cut(s) 503
BanI GGYRCC 1 cut(s) 487
BanII GRGCYC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 4 cut(s) 17, 227, 294, 486
BccI CCATC 5 cut(s) 310, 347, 386, 440, 532
BciT130I CCWGG 2 cut(s) 371, 554
BciVI GTATCC 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 448, 521
BfuI GTATCC 1 cut(s) 186
BglII AGATCT 1 cut(s) 80
BisI GCNGC 4 cut(s) 31, 216, 308, 475
BlsI GCNGC 4 cut(s) 32, 217, 309, 476
Bme1390I CCNGG 2 cut(s) 371, 554
Bme18I GGWCC 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 2 cut(s) 371, 554
BpuEI CTTGAG 1 cut(s) 568
BsaJI CCNNGG 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
BseBI CCWGG 2 cut(s) 371, 554
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 3 cut(s) 327, 355, 426
BseXI GCAGC 4 cut(s) 17, 227, 294, 486
Bsh1236I CGCG 1 cut(s) 497
BshNI GGYRCC 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 411
BslFI GGGAC 1 cut(s) 104
BsmAI GTCTC 2 cut(s) 448, 521
BsmBI CGTCTC 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 2 cut(s) 80, 402
BspACI CCGC 3 cut(s) 338, 495, 501
BspFNI CGCG 1 cut(s) 497
BspLI GGNNCC 1 cut(s) 489
BspT107I GGYRCC 1 cut(s) 487
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 2 cut(s) 80, 402
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 371, 554
Bst4CI ACNGT 2 cut(s) 230, 419
Bst6I CTCTTC 2 cut(s) 151, 451
BstC8I GCNNGC 1 cut(s) 499
BstDEI CTNAG 1 cut(s) 483
BstF5I GGATG 3 cut(s) 327, 355, 426
BstFNI CGCG 1 cut(s) 497
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 2 cut(s) 83, 405
BstMAI GTCTC 2 cut(s) 448, 521
BstMBI GATC 2 cut(s) 80, 402
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 2 cut(s) 371, 554
BstSCI CCNGG 2 cut(s) 369, 552
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 4 cut(s) 17, 227, 294, 486
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuI GTATCC 1 cut(s) 186
BtsCI GGATG 3 cut(s) 327, 355, 426
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 3 cut(s) 38, 279, 530
Cac8I GCNNGC 1 cut(s) 499
CfoI GCGC 1 cut(s) 455
Cfr13I GGNCC 1 cut(s) 503
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 1 cut(s) 397
CviAII CATG 5 cut(s) 62, 383, 400, 523, 559
CviJI RGCY 9 cut(s) 30, 167, 218, 307, 409, 463, 477, 546, 552
CviKI_1 RGCY 9 cut(s) 30, 167, 218, 307, 409, 463, 477, 546, 552
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 1 cut(s) 483
DpnI GATC 2 cut(s) 82, 404
DpnII GATC 2 cut(s) 80, 402
Eam1104I CTCTTC 2 cut(s) 151, 451
EarI CTCTTC 2 cut(s) 151, 451
Ecl136II GAGCTC 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 503
Eco53kI GAGCTC 1 cut(s) 409
EcoICRI GAGCTC 1 cut(s) 409
EcoRII CCWGG 2 cut(s) 369, 552
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 448
FaeI CATG 5 cut(s) 65, 386, 403, 526, 562
FaqI GGGAC 1 cut(s) 104
FatI CATG 5 cut(s) 61, 382, 399, 522, 558
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 4 cut(s) 31, 216, 308, 475
FokI GGATG 3 cut(s) 334, 362, 413
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 4 cut(s) 31, 216, 308, 475
GlaI GCGC 1 cut(s) 454
GluI GCNGC 4 cut(s) 31, 216, 308, 475
HhaI GCGC 1 cut(s) 455
Hin1II CATG 5 cut(s) 65, 386, 403, 526, 562
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HincII GTYRAC 2 cut(s) 25, 367
HindII GTYRAC 2 cut(s) 25, 367
HindIII AAGCTT 1 cut(s) 544
HinfI GANTC 1 cut(s) 92
HpaI GTTAAC 1 cut(s) 25
Hpy166II GTNNAC 3 cut(s) 25, 233, 367
Hpy188I TCNGA 1 cut(s) 239
Hpy8I GTNNAC 3 cut(s) 25, 233, 367
HpyAV CCTTC 2 cut(s) 280, 466
HpyCH4III ACNGT 2 cut(s) 230, 419
HpyCH4V TGCA 5 cut(s) 4, 78, 279, 310, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 1 cut(s) 483
Hsp92II CATG 5 cut(s) 65, 386, 403, 526, 562
HspAI GCGC 1 cut(s) 453
KspAI GTTAAC 1 cut(s) 25
Kzo9I GATC 2 cut(s) 80, 402
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 7 cut(s) 225, 356, 383, 402, 478, 539, 566
Lsp1109I GCAGC 4 cut(s) 17, 227, 294, 486
MabI ACCWGGT 1 cut(s) 369
MaeIII GTNAC 2 cut(s) 51, 331
MalI GATC 2 cut(s) 82, 404
MboI GATC 2 cut(s) 80, 402
MboII GAAGA 4 cut(s) 122, 138, 370, 438
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 411
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 3 cut(s) 262, 268, 530
MnlI CCTC 8 cut(s) 10, 28, 93, 154, 217, 294, 318, 340
MseI TTAA 2 cut(s) 24, 297
MspA1I CMGCKG 1 cut(s) 30
MspR9I CCNGG 2 cut(s) 371, 554
MvaI CCWGG 2 cut(s) 371, 554
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 1 cut(s) 494
NdeII GATC 2 cut(s) 80, 402
NlaIII CATG 5 cut(s) 65, 386, 403, 526, 562
NlaIV GGNNCC 1 cut(s) 489
NmuCI GTSAC 1 cut(s) 51
PkrI GCNGC 4 cut(s) 32, 217, 309, 476
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 369, 552
PspGI CCWGG 2 cut(s) 369, 552
PspN4I GGNNCC 1 cut(s) 489
PspPI GGNCC 1 cut(s) 503
PsuI RGATCY 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SacI GAGCTC 1 cut(s) 411
SalI GTCGAC 1 cut(s) 365
SaqAI TTAA 2 cut(s) 24, 297
SatI GCNGC 4 cut(s) 31, 216, 308, 475
Sau3AI GATC 2 cut(s) 80, 402
Sau96I GGNCC 1 cut(s) 503
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 371, 554
SduI GDGCHC 1 cut(s) 411
SexAI ACCWGGT 1 cut(s) 369
SinI GGWCC 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
SsiI CCGC 3 cut(s) 338, 495, 501
SstI GAGCTC 1 cut(s) 411
StyD4I CCNGG 2 cut(s) 369, 552
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 2 cut(s) 230, 419
TaqI TCGA 2 cut(s) 366, 405
Tru1I TTAA 2 cut(s) 24, 297
Tru9I TTAA 2 cut(s) 24, 297
TscAI CASTG 3 cut(s) 45, 286, 537
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 4 cut(s) 30, 215, 307, 474
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 3 cut(s) 123, 511, 578
TspRI CASTG 3 cut(s) 45, 286, 537
VpaK11BI GGWCC 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.