Rmu_sc0034974.1_g000001

lactoylglutathione

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034974.1
OG0014637
Physical Location & Seq
Forward (+)
1 .. 584
584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034974.1_g000001.1.cds

Sequence Viewer

Length: 391 bp
gttgtataactatgggattgggatacacttgatcgaaagtccagctatggaggactttgaactccgaccaatcaatcccaaggacaaccacatctccttccaatgcactgatgttggacttgttaagaggaagctgcaagagatggggatgaggtatgttactgcagtggtagaggacgatgggatcaaggtcgaccaggtgttcttccatgacccagatgggtacatgatcgagctctgcaactgtgagaacatccccatcattcctgtctcttcttgtgccttcaagcccagaggtagcagcttcagtaaggcaccaacttcgtgcggtttcatggagacactgatgatggaaagcttgagcctggacatgatgaacttctcattctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase

Protein Analysis

129

Amino Acids

14.59

Weight (kDa)

4.68

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12090 FvH4_1g12090
malus_domestica MD02G1110500.v1.1 MD15G1248200.v1.1
prunus_persica Prupe.7G165900_v2.0.a1
pyrus_communis pycom15g21850
rosa_chinensis RchiOBHm_Chr2g0099751
rosa_laevigata RLG00000016910
rosa_multiflora Rmu_sc0034974.1_g000001 Rmu_sc0034975.1_g000001
rosa_roxburghii Rroxscaffold_2G00142800
rosa_rugosa Rorug02G0082700
rosa_samantha Rh2AG132400 Rh2BG135200 Rh2CG136400 Rh2DG136900
rosa_wichuraiana Rw2G010240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 193
AciI CCGC 1 cut(s) 328
AclWI GGATC 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 290
AfaI GTAC 1 cut(s) 225
AgsI TTSAA 2 cut(s) 60, 287
AjnI CCWGG 2 cut(s) 196, 364
AluBI AGCT 5 cut(s) 45, 134, 236, 304, 358
AluI AGCT 5 cut(s) 45, 134, 236, 304, 358
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 2 cut(s) 275, 333
AlwI GGATC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 134, 301
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 121, 313
BccI CCATC 5 cut(s) 137, 174, 213, 267, 344
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciT130I CCWGG 2 cut(s) 198, 366
BciVI GTATCC 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 275, 333
BfmI CTRYAG 1 cut(s) 163
BfuI GTATCC 1 cut(s) 16
BisI GCNGC 2 cut(s) 135, 302
BlsI GCNGC 2 cut(s) 136, 303
Bme1390I CCNGG 2 cut(s) 198, 366
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 2 cut(s) 198, 366
BpuEI CTTGAG 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
BseBI CCWGG 2 cut(s) 198, 366
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 2 cut(s) 154, 253
BseXI GCAGC 2 cut(s) 121, 313
BshNI GGYRCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 238
BsmAI GTCTC 2 cut(s) 275, 333
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 3 cut(s) 31, 184, 229
BspACI CCGC 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 316
BspMAI CTGCAG 1 cut(s) 167
BspPI GGATC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 3 cut(s) 31, 184, 229
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 2 cut(s) 198, 366
Bst4CI ACNGT 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 278
BstF5I GGATG 2 cut(s) 154, 253
BstKTI GATC 3 cut(s) 34, 187, 232
BstMAI GTCTC 2 cut(s) 275, 333
BstMBI GATC 3 cut(s) 31, 184, 229
BstNI CCWGG 2 cut(s) 198, 366
BstSCI CCNGG 2 cut(s) 196, 364
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 121, 313
BsuI GTATCC 1 cut(s) 16
BtsCI GGATG 2 cut(s) 154, 253
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 106, 172, 342
CsiI ACCWGGT 1 cut(s) 196
Csp6I GTAC 1 cut(s) 224
CviAII CATG 4 cut(s) 210, 227, 335, 371
CviJI RGCY 7 cut(s) 45, 134, 236, 290, 304, 358, 364
CviKI_1 RGCY 7 cut(s) 45, 134, 236, 290, 304, 358, 364
CviQI GTAC 1 cut(s) 224
DpnI GATC 3 cut(s) 33, 186, 231
DpnII GATC 3 cut(s) 31, 184, 229
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 196, 364
EcoT14I CCWWGG 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 4 cut(s) 213, 230, 338, 374
FaiI YATR 8 cut(s) 7, 13, 48, 157, 211, 228, 336, 372
FatI CATG 4 cut(s) 209, 226, 334, 370
FblI GTMKAC 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 135, 302
FokI GGATG 2 cut(s) 161, 240
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 135, 302
GluI GCNGC 2 cut(s) 135, 302
Hin1II CATG 4 cut(s) 213, 230, 338, 374
HincII GTYRAC 1 cut(s) 194
HindII GTYRAC 1 cut(s) 194
HindIII AAGCTT 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 66
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 107, 293
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4V TGCA 4 cut(s) 106, 137, 165, 241
Hsp92II CATG 4 cut(s) 213, 230, 338, 374
Kzo9I GATC 3 cut(s) 31, 184, 229
LpnPI CCDG 8 cut(s) 55, 183, 210, 229, 280, 305, 351, 378
Lsp1109I GCAGC 2 cut(s) 121, 313
MabI ACCWGGT 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 158
MalI GATC 3 cut(s) 33, 186, 231
MboI GATC 3 cut(s) 31, 184, 229
MboII GAAGA 2 cut(s) 197, 265
MhlI GDGCHC 1 cut(s) 238
MmeI TCCRAC 2 cut(s) 89, 95
MnlI CCTC 5 cut(s) 44, 121, 145, 167, 288
MseI TTAA 1 cut(s) 124
MspR9I CCNGG 2 cut(s) 198, 366
MvaI CCWGG 2 cut(s) 198, 366
NdeII GATC 3 cut(s) 31, 184, 229
NlaIII CATG 4 cut(s) 213, 230, 338, 374
NlaIV GGNNCC 1 cut(s) 316
PkrI GCNGC 2 cut(s) 136, 303
Psp124BI GAGCTC 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 196, 364
PspGI CCWGG 2 cut(s) 196, 364
PspN4I GGNNCC 1 cut(s) 316
PstI CTGCAG 1 cut(s) 167
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SacI GAGCTC 1 cut(s) 238
SalI GTCGAC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 124
SatI GCNGC 2 cut(s) 135, 302
Sau3AI GATC 3 cut(s) 31, 184, 229
ScrFI CCNGG 2 cut(s) 198, 366
SduI GDGCHC 1 cut(s) 238
SetI ASST 9 cut(s) 47, 136, 156, 193, 202, 238, 299, 306, 360
SexAI ACCWGGT 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SsiI CCGC 1 cut(s) 328
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 2 cut(s) 196, 364
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 246
TaqI TCGA 3 cut(s) 34, 193, 232
Tru1I TTAA 1 cut(s) 124
Tru9I TTAA 1 cut(s) 124
TscAI CASTG 3 cut(s) 113, 172, 349
TseI GCWGC 2 cut(s) 134, 301
TspDTI ATGAA 2 cut(s) 323, 390
TspRI CASTG 3 cut(s) 113, 172, 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.