Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014637

Physical Location & Seq

Genomic Coordinates Forward (+)

11964336 .. 11968484

Gene Structure 4149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG132400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGAAGTGTTGGGCTTTGTTCTCATCAAACGCCCCTCATCTTTCAACTTCAATGGAGCTTGGTAAGCTTTTCTCACTCTATGTACTTGTTCGAAGTTTTTTCGAATCAATGCTAATACTGACGAACTACTTTGTTCTGTGTAGGTTGTATAACTATGGGATTGGGATACACTTGATCGAAAGTCCAGCTATGGAGGACTTTGAACTCCGACCAATCAATCCTAAGGACAACCACATCTCCTTCCAATGCACTGATGTTGGACTTGTTAAGAGGAAGCTGCAAGAGATGGGGATGAGGTATGTTACTGCAGTGGTAGAGGACGATGGGATCAAGGTCGACCAGGTGTTCTTCCATGACCCAGATGGGTACATGATCGAGCTCTGCAACTGTGAGAACATCCCCATCATTCCTGTCTCTTCTTGTGCCTTCAAGCCCAGAGGTAGCAGCTTCAGTAAGGCACCAACTTCGTGCGGTTTCATGGAGACACTGATGATGGAAAGCTTGAGCCTGGACATGATGAACTTCTCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

178

Amino Acids

20.29

Weight (kDa)

5.33

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12090 FvH4_1g12090
malus_domestica	MD02G1110500.v1.1 MD15G1248200.v1.1
prunus_persica	Prupe.7G165900_v2.0.a1
pyrus_communis	pycom15g21850
rosa_chinensis	RchiOBHm_Chr2g0099751
rosa_laevigata	RLG00000016910
rosa_multiflora	Rmu_sc0034974.1_g000001 Rmu_sc0034975.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142800
rosa_rugosa	Rorug02G0082700
rosa_samantha	Rh2AG132400 Rh2BG135200 Rh2CG136400 Rh2DG136900
rosa_wichuraiana	Rw2G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	1 cut(s)	474
AclWI	GGATC	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	436
AfaI	GTAC	2 cut(s)	87, 371
AgsI	TTSAA	4 cut(s)	48, 54, 206, 433
AjnI	CCWGG	2 cut(s)	342, 510
AluBI	AGCT	7 cut(s)	61, 70, 191, 280, 382, 450, 504
AluI	AGCT	7 cut(s)	61, 70, 191, 280, 382, 450, 504
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	2 cut(s)	421, 479
AlwI	GGATC	1 cut(s)	338
ApeKI	GCWGC	2 cut(s)	280, 447
AsuII	TTCGAA	2 cut(s)	94, 105
AxyI	CCTNAGG	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	267, 459
BccI	CCATC	5 cut(s)	283, 320, 359, 413, 490
BcgI	CGANNNNNNTGC	2 cut(s)	450, 484
BciT130I	CCWGG	2 cut(s)	344, 512
BciVI	GTATCC	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	421, 479
BfmI	CTRYAG	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	162
BisI	GCNGC	2 cut(s)	281, 448
BlsI	GCNGC	2 cut(s)	282, 449
Bme1390I	CCNGG	2 cut(s)	344, 512
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	2 cut(s)	344, 512
Bpu14I	TTCGAA	2 cut(s)	94, 105
BpuEI	CTTGAG	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bse21I	CCTNAGG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	344, 512
BseGI	GGATG	2 cut(s)	300, 399
BseXI	GCAGC	2 cut(s)	267, 459
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	384
BsmAI	GTCTC	2 cut(s)	421, 479
Bsp119I	TTCGAA	2 cut(s)	94, 105
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	3 cut(s)	177, 330, 375
BspACI	CCGC	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	462
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	1 cut(s)	338
BspT104I	TTCGAA	2 cut(s)	94, 105
BspT107I	GGYRCC	1 cut(s)	460
BssMI	GATC	3 cut(s)	177, 330, 375
Bst2UI	CCWGG	2 cut(s)	344, 512
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	424
BstBI	TTCGAA	2 cut(s)	94, 105
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	300, 399
BstKTI	GATC	3 cut(s)	180, 333, 378
BstMAI	GTCTC	2 cut(s)	421, 479
BstMBI	GATC	3 cut(s)	177, 330, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	2 cut(s)	344, 512
BstSCI	CCNGG	2 cut(s)	342, 510
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	267, 459
Bsu36I	CCTNAGG	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	300, 399
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	3 cut(s)	252, 318, 488
CsiI	ACCWGGT	1 cut(s)	342
Csp6I	GTAC	2 cut(s)	86, 370
CviAII	CATG	4 cut(s)	356, 373, 481, 517
CviQI	GTAC	2 cut(s)	86, 370
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	3 cut(s)	179, 332, 377
DpnII	GATC	3 cut(s)	177, 330, 375
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Ecl136II	GAGCTC	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	384
Eco53kI	GAGCTC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	436
Eco81I	CCTNAGG	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	382
EcoRII	CCWGG	2 cut(s)	342, 510
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	4 cut(s)	359, 376, 484, 520
FaiI	YATR	9 cut(s)	84, 153, 159, 194, 303, 357, 374, 482, 518
FatI	CATG	4 cut(s)	355, 372, 480, 516
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	281, 448
FokI	GGATG	2 cut(s)	307, 386
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	281, 448
GluI	GCNGC	2 cut(s)	281, 448
Hin1II	CATG	4 cut(s)	359, 376, 484, 520
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	2 cut(s)	68, 502
HinfI	GANTC	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	253, 439
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	4 cut(s)	252, 283, 311, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	359, 376, 484, 520
Kzo9I	GATC	3 cut(s)	177, 330, 375
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	8 cut(s)	201, 329, 356, 375, 426, 451, 497, 524
Lsp1109I	GCAGC	2 cut(s)	267, 459
MabI	ACCWGGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	3 cut(s)	179, 332, 377
MboI	GATC	3 cut(s)	177, 330, 375
MboII	GAAGA	3 cut(s)	16, 343, 411
MhlI	GDGCHC	1 cut(s)	384
MmeI	TCCRAC	2 cut(s)	235, 241
MnlI	CCTC	6 cut(s)	48, 190, 267, 291, 313, 434
MseI	TTAA	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	344, 512
MvaI	CCWGG	2 cut(s)	344, 512
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	3 cut(s)	177, 330, 375
NlaIII	CATG	4 cut(s)	359, 376, 484, 520
NlaIV	GGNNCC	1 cut(s)	462
NspV	TTCGAA	2 cut(s)	94, 105
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	282, 449
Psp124BI	GAGCTC	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	342, 510
PspGI	CCWGG	2 cut(s)	342, 510
PspN4I	GGNNCC	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	313
RsaI	GTAC	2 cut(s)	87, 371
RsaNI	GTAC	2 cut(s)	86, 370
SacI	GAGCTC	1 cut(s)	384
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	281, 448
Sau3AI	GATC	3 cut(s)	177, 330, 375
ScrFI	CCNGG	2 cut(s)	344, 512
SduI	GDGCHC	1 cut(s)	384
SexAI	ACCWGGT	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	309
SfuI	TTCGAA	2 cut(s)	94, 105
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
SsiI	CCGC	1 cut(s)	474
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	342, 510
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	5 cut(s)	94, 105, 180, 339, 378
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	3 cut(s)	259, 318, 495
TseI	GCWGC	2 cut(s)	280, 447
TspDTI	ATGAA	3 cut(s)	17, 469, 536
TspRI	CASTG	3 cut(s)	259, 318, 495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.