FvH4_1g12530

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
6885295 .. 6888890
3596 bp
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UTR
Exon/CDS
Intron
FvH4_1g12530.t1

Sequence Viewer

Length: 369 bp
ATGTTTGGAACAGCAATAAGGCTCATTGGGAGAAAACCGAAACCGAAGATGAAACCGATAGAGCTCAAAACTCCACCTGAGCAGACACAGACCATCACTAGGGCCATCTTTGATATCGTGAAGGAGCACGGTCCTCTCACCATTTCTGAAACATGGGATCACGTTCAGGAAGTTGGTTTAAGAGGACTGACGAGCAAGAGGCACATGAAGATAGTGTTGAGGTGGATGAAGGAGAGGCAGAAGCTCAGACAAATATGCAACCATGTAGGACCTAATAAGCAGTTTCTGTATACAACTTGGTTTACAAAACCCAACATCAAGCAGCAGCCAAAACCAGTAAATGGTTTTTCACACCCCAAGTCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.24

Weight (kDa)

10.59

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012500)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 341
AccI GTMKAC 1 cut(s) 290
AclWI GGATC 1 cut(s) 165
AfiI CCNNNNNNNGG 2 cut(s) 99, 341
AluBI AGCT 2 cut(s) 64, 244
AluI AGCT 2 cut(s) 64, 244
Alw21I GWGCWC 2 cut(s) 66, 129
AlwI GGATC 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 286
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 322, 325
AspS9I GGNCC 3 cut(s) 102, 131, 269
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 2 cut(s) 131, 269
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 2 cut(s) 66, 129
BbvI GCAGC 2 cut(s) 334, 337
BccI CCATC 2 cut(s) 101, 113
BfaI CTAG 1 cut(s) 99
BisI GCNGC 2 cut(s) 323, 326
BlsI GCNGC 2 cut(s) 324, 327
Bme18I GGWCC 2 cut(s) 131, 269
BmgT120I GGNCC 3 cut(s) 102, 131, 269
Bpu10I CCTNAGC 1 cut(s) 78
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 341
Bse1I ACTGG 1 cut(s) 335
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 99, 341
BseMII CTCAG 2 cut(s) 69, 259
BseNI ACTGG 1 cut(s) 335
BseXI GCAGC 2 cut(s) 334, 337
BshFI GGCC 1 cut(s) 104
BsiHKAI GWGCWC 2 cut(s) 66, 129
BslI CCNNNNNNNGG 2 cut(s) 99, 341
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 66, 129
Bsp143I GATC 1 cut(s) 157
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 70, 258
BspPI GGATC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 335
BssMI GATC 1 cut(s) 157
BssNAI GTATAC 1 cut(s) 291
Bst1107I GTATAC 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 78, 245
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 334, 337
BstZ17I GTATAC 1 cut(s) 291
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 231
CaiI CAGNNNCTG 1 cut(s) 286
Cfr13I GGNCC 3 cut(s) 102, 131, 269
CviAII CATG 3 cut(s) 153, 205, 263
CviJI RGCY 5 cut(s) 22, 64, 104, 244, 328
CviKI_1 RGCY 5 cut(s) 22, 64, 104, 244, 328
DdeI CTNAG 2 cut(s) 78, 245
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 2 cut(s) 131, 269
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 269
EcoRV GATATC 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 3 cut(s) 156, 208, 266
FaiI YATR 5 cut(s) 154, 206, 256, 264, 291
FatI CATG 3 cut(s) 152, 204, 262
FblI GTMKAC 1 cut(s) 290
Fnu4HI GCNGC 2 cut(s) 323, 326
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 323, 326
FspBI CTAG 1 cut(s) 99
GluI GCNGC 2 cut(s) 323, 326
HaeIII GGCC 1 cut(s) 104
Hin1II CATG 3 cut(s) 156, 208, 266
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 291, 303
Hpy188I TCNGA 2 cut(s) 148, 248
Hpy188III TCNNGA 3 cut(s) 118, 167, 366
Hpy8I GTNNAC 2 cut(s) 291, 303
HpyAV CCTTC 2 cut(s) 115, 223
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 258
HpyF3I CTNAG 2 cut(s) 78, 245
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 3 cut(s) 156, 208, 266
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 3 cut(s) 90, 152, 348
Lsp1109I GCAGC 2 cut(s) 334, 337
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 162
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 58, 220
MhlI GDGCHC 2 cut(s) 66, 129
MnlI CCTC 5 cut(s) 144, 176, 192, 213, 228
MseI TTAA 1 cut(s) 179
NdeII GATC 1 cut(s) 157
NlaIII CATG 3 cut(s) 156, 208, 266
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 2 cut(s) 324, 327
PpuMI RGGWCCY 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 269
PspPI GGNCC 3 cut(s) 102, 131, 269
PspPPI RGGWCCY 1 cut(s) 269
PstNI CAGNNNCTG 1 cut(s) 286
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 2 cut(s) 323, 326
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 3 cut(s) 102, 131, 269
SduI GDGCHC 2 cut(s) 66, 129
SetI ASST 6 cut(s) 66, 79, 165, 224, 246, 274
SinI GGWCC 2 cut(s) 131, 269
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 1 cut(s) 66
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 165
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseI GCWGC 2 cut(s) 322, 325
TspDTI ATGAA 3 cut(s) 65, 221, 242
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 131, 269
XmiI GTMKAC 1 cut(s) 290
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.