RLG00000016975

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012500
Physical Location & Seq
Reverse (-)
11745225 .. 11745686
462 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016975

Sequence Viewer

Length: 321 bp
ATGAAACCAATAGAGCTCAAAACCCCACCTGAGCAGACACAGACCATCACTAGGACCATCTTTGACATCGTGAAGGAGCACGGTCCTCTCACCATTTCTGAAACCTGGGATCACGTCAAGGAAGTTGGTTTAAGAGGACTGACGAGCAAGAGGCACATGAAGATAGTGTTGAGGTGGATGAAGGAGAGGCAGAAGCTTAGACAAATATGCAACCATGTAGGGCCTAATAAGCAGTTTCTGTATACGACTTGGTTCACAAAACCCAACACCAAGCAGCAGCCGAAACCTGTAAACGGTTCTCCACAACCCAAGTTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.47

Weight (kDa)

10.25

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49410 AT5G49410
fragaria_vesca FvH4_1g12530
malus_domestica MD02G1139500.v1.1 MD15G1252600.v1.1
prunus_persica Prupe.7G161600_v2.0.a1 Prupe.7G161600_v2.0.a1 Prupe.7G161600_v2.0.a1
pyrus_communis pycom02g11020 pycom15g22250
rosa_chinensis RchiOBHm_Chr2g0100461
rosa_laevigata RLG00000016975
rosa_multiflora Rmu_sc0000528.1_g000026
rosa_roxburghii Rroxscaffold_2G00142220
rosa_rugosa Rorug02G0088300
rosa_samantha Rh2AG138000 Rh2CG143300 Rh2DG142800
rosa_wichuraiana Rw2G010780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 242
AclWI GGATC 1 cut(s) 117
AfiI CCNNNNNNNGG 2 cut(s) 51, 293
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 2 cut(s) 16, 196
AluI AGCT 2 cut(s) 16, 196
Alw21I GWGCWC 2 cut(s) 18, 81
AlwI GGATC 1 cut(s) 117
AlwNI CAGNNNCTG 1 cut(s) 238
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 274, 277
AspS9I GGNCC 3 cut(s) 54, 83, 221
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 2 cut(s) 54, 83
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 18, 81
BbvI GCAGC 2 cut(s) 286, 289
BccI CCATC 2 cut(s) 53, 65
BciT130I CCWGG 1 cut(s) 106
BfaI CTAG 1 cut(s) 51
BisI GCNGC 2 cut(s) 275, 278
BlsI GCNGC 2 cut(s) 276, 279
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 2 cut(s) 54, 83
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 54, 83, 221
BmrFI CCNGG 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 293
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 51, 293
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 286, 289
BshFI GGCC 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 18, 81
BslI CCNNNNNNNGG 2 cut(s) 51, 293
BsnI GGCC 1 cut(s) 223
Bsp1286I GDGCHC 2 cut(s) 18, 81
Bsp143I GATC 1 cut(s) 109
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 22
BspPI GGATC 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 1 cut(s) 109
BssNAI GTATAC 1 cut(s) 243
Bst1107I GTATAC 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 2 cut(s) 83, 296
BstDEI CTNAG 2 cut(s) 30, 197
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstV1I GCAGC 2 cut(s) 286, 289
BstZ17I GTATAC 1 cut(s) 243
BsuRI GGCC 1 cut(s) 223
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 238
Cfr13I GGNCC 3 cut(s) 54, 83, 221
CviAII CATG 2 cut(s) 157, 215
CviJI RGCY 4 cut(s) 16, 196, 223, 280
CviKI_1 RGCY 4 cut(s) 16, 196, 223, 280
DdeI CTNAG 2 cut(s) 30, 197
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 54, 83
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 18
FaeI CATG 2 cut(s) 160, 218
FaiI YATR 4 cut(s) 158, 208, 216, 243
FatI CATG 2 cut(s) 156, 214
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 2 cut(s) 275, 278
FokI GGATG 1 cut(s) 190
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 275, 278
FspBI CTAG 1 cut(s) 51
GluI GCNGC 2 cut(s) 275, 278
HaeIII GGCC 1 cut(s) 223
Hin1II CATG 2 cut(s) 160, 218
HindIII AAGCTT 1 cut(s) 194
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 3 cut(s) 243, 255, 292
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 3 cut(s) 243, 255, 292
HpyAV CCTTC 2 cut(s) 67, 175
HpyCH4III ACNGT 2 cut(s) 83, 296
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 2 cut(s) 30, 197
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 2 cut(s) 160, 218
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 4 cut(s) 42, 91, 118, 300
Lsp1109I GCAGC 2 cut(s) 286, 289
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 114
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 18, 81
MnlI CCTC 5 cut(s) 96, 128, 144, 165, 180
MseI TTAA 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 160, 218
PkrI GCNGC 2 cut(s) 276, 279
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspPI GGNCC 3 cut(s) 54, 83, 221
PstNI CAGNNNCTG 1 cut(s) 238
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 2 cut(s) 275, 278
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 3 cut(s) 54, 83, 221
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 2 cut(s) 18, 81
SetI ASST 7 cut(s) 18, 31, 107, 117, 176, 198, 289
SinI GGWCC 2 cut(s) 54, 83
SspMI CTAG 1 cut(s) 51
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 2 cut(s) 83, 296
TaiI ACGT 1 cut(s) 117
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TseI GCWGC 2 cut(s) 274, 277
TspDTI ATGAA 3 cut(s) 17, 173, 194
VpaK11BI GGWCC 2 cut(s) 54, 83
XmiI GTMKAC 1 cut(s) 242
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.