Prupe.7G161600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012500
Physical Location & Seq
Forward (+)
16753381 .. 16754446
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G161600.1

Sequence Viewer

Length: 414 bp
ATGCGGAAATGGTTTAGGGTTAGACAAGGTCAAGAAAGTGGCAACATGTTTGGGACAGCGATAAGGTGTATTGCGAGGAAACCAAAACCACAGATGAAACCCATAGAGCTCAAAACCCCACCTGAGCAGACGCAGACCATCACTAGGGCCATCTTCGATATCGTCAAGGAGCATGGTCCTCTCACCATTACTGAAACCTGGGATCACGTTAAGGAAGTTGGGTTGAGAGGATTGACGAGCAAGAGGCACATGAAGATAGTGTTGAGGTGGATGAGGGAGAGGCAGAAGCTTAGACTAATTTGCAACCATGTAGGGCCTCAGAAGCAGTTTCTGTATACGACTTGGTTTACAAAGCCCAATCTCAAGCAGCAGGGAAAACCAGTAAATGATTCTCCACAACCCAAGTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.11

Weight (kDa)

10.72

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49410 AT5G49410
fragaria_vesca FvH4_1g12530
malus_domestica MD02G1139500.v1.1 MD15G1252600.v1.1
prunus_persica Prupe.7G161600_v2.0.a1 Prupe.7G161600_v2.0.a1 Prupe.7G161600_v2.0.a1
pyrus_communis pycom02g11020 pycom15g22250
rosa_chinensis RchiOBHm_Chr2g0100461
rosa_laevigata RLG00000016975
rosa_multiflora Rmu_sc0000528.1_g000026
rosa_roxburghii Rroxscaffold_2G00142220
rosa_rugosa Rorug02G0088300
rosa_samantha Rh2AG138000 Rh2CG143300 Rh2DG142800
rosa_wichuraiana Rw2G010780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 335
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 144
AflIII ACRYGT 1 cut(s) 45
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 2 cut(s) 109, 289
AluI AGCT 2 cut(s) 109, 289
Alw21I GWGCWC 1 cut(s) 111
AlwI GGATC 1 cut(s) 210
AlwNI CAGNNNCTG 1 cut(s) 331
AoxI GGCC 2 cut(s) 147, 314
ApeKI GCWGC 1 cut(s) 367
AspS9I GGNCC 3 cut(s) 147, 176, 314
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 379
BccI CCATC 2 cut(s) 146, 158
BciT130I CCWGG 1 cut(s) 199
BfaI CTAG 1 cut(s) 144
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 3 cut(s) 147, 176, 314
BmrFI CCNGG 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 114, 332
BseNI ACTGG 1 cut(s) 380
BseXI GCAGC 1 cut(s) 379
BshFI GGCC 2 cut(s) 149, 316
BsiHKAI GWGCWC 1 cut(s) 111
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 2 cut(s) 149, 316
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 4
BspANI GGCC 2 cut(s) 149, 316
BspCNI CTCAG 2 cut(s) 115, 331
BspPI GGATC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 202
BssNAI GTATAC 1 cut(s) 336
Bst1107I GTATAC 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 199
BstDEI CTNAG 3 cut(s) 123, 290, 318
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 379
BstZ17I GTATAC 1 cut(s) 336
BsuRI GGCC 2 cut(s) 149, 316
BtsCI GGATG 1 cut(s) 276
CaiI CAGNNNCTG 1 cut(s) 331
Cfr13I GGNCC 3 cut(s) 147, 176, 314
CseI GACGC 1 cut(s) 139
CviAII CATG 4 cut(s) 46, 173, 250, 308
CviJI RGCY 5 cut(s) 109, 149, 289, 316, 355
CviKI_1 RGCY 5 cut(s) 109, 149, 289, 316, 355
DdeI CTNAG 3 cut(s) 123, 290, 318
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 197
EcoRV GATATC 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 4 cut(s) 49, 176, 253, 311
FaiI YATR 6 cut(s) 47, 104, 174, 251, 309, 336
FaqI GGGAC 1 cut(s) 67
FatI CATG 4 cut(s) 45, 172, 249, 307
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 1 cut(s) 283
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 1 cut(s) 144
GluI GCNGC 1 cut(s) 368
HaeIII GGCC 2 cut(s) 149, 316
HgaI GACGC 1 cut(s) 139
Hin1II CATG 4 cut(s) 49, 176, 253, 311
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 1 cut(s) 389
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 336, 348
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 2 cut(s) 336, 348
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 3 cut(s) 123, 290, 318
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 4 cut(s) 49, 176, 253, 311
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 5 cut(s) 135, 184, 211, 356, 393
Lsp1109I GCAGC 1 cut(s) 379
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 207
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 2 cut(s) 145, 265
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 297
MnlI CCTC 8 cut(s) 69, 189, 221, 237, 258, 267, 273, 327
MseI TTAA 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeII GATC 1 cut(s) 202
NlaIII CATG 4 cut(s) 49, 176, 253, 311
NspI RCATGY 1 cut(s) 49
PciI ACATGT 1 cut(s) 45
PfeI GAWTC 1 cut(s) 389
PflFI GACNNNGTC 1 cut(s) 27
PkrI GCNGC 1 cut(s) 369
PscI ACATGT 1 cut(s) 45
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspPI GGNCC 3 cut(s) 147, 176, 314
PstNI CAGNNNCTG 1 cut(s) 331
PsyI GACNNNGTC 1 cut(s) 27
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 3 cut(s) 147, 176, 314
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 111
SetI ASST 8 cut(s) 31, 68, 111, 124, 200, 210, 269, 291
SinI GGWCC 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 1 cut(s) 297
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 144
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 197
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 156
TasI AATT 1 cut(s) 297
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 1 cut(s) 367
TspDTI ATGAA 2 cut(s) 110, 266
Tth111I GACNNNGTC 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 176
XceI RCATGY 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 335
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.