MD02G1139500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012500
Physical Location & Seq
Reverse (-)
11639620 .. 11640312
693 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1139500.v1.1.491

Sequence Viewer

Length: 369 bp
ATGTTTGGGACAGCGATCAGGTGCATCGCTCGGAAACCAAAACCTCCGATGAAACCCATAGAGCTCAATACCCCACCTGAGCAGACACAGACCATCACCAGGGCCATCTTCGACATCGTCAAGGAGCACGGTCCTCTCACCATTTCCGAAACCTGGGATCACGTCAAGAAAGTCGGGTTGAGAGGGTTGACGAGCAAGAGGCACATGAAGATAGTGCTGAGGTGGATGAGGGAGAGGCAGAAGCTCAGATTGATATGCAACCATGTAGGAGCTCAGAAGCACTTTCTGTACACCACTTGGTTTACAAAGCACAACTTCAAGCAGAAGCCAAAGCCAGCAAGTGATTCTCCACAACCCAAGTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.23

Weight (kDa)

10.59

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49410 AT5G49410
fragaria_vesca FvH4_1g12530
malus_domestica MD02G1139500.v1.1 MD15G1252600.v1.1
prunus_persica Prupe.7G161600_v2.0.a1 Prupe.7G161600_v2.0.a1 Prupe.7G161600_v2.0.a1
pyrus_communis pycom02g11020 pycom15g22250
rosa_chinensis RchiOBHm_Chr2g0100461
rosa_laevigata RLG00000016975
rosa_multiflora Rmu_sc0000528.1_g000026
rosa_roxburghii Rroxscaffold_2G00142220
rosa_rugosa Rorug02G0088300
rosa_samantha Rh2AG138000 Rh2CG143300 Rh2DG142800
rosa_wichuraiana Rw2G010780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 165
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 99, 153
AgsI TTSAA 1 cut(s) 319
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 2 cut(s) 98, 152
AluBI AGCT 3 cut(s) 64, 244, 272
AluI AGCT 3 cut(s) 64, 244, 272
Alw21I GWGCWC 3 cut(s) 66, 129, 274
AlwI GGATC 1 cut(s) 165
AoxI GGCC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 102, 131
AsuHPI GGTGA 2 cut(s) 88, 130
AvaII GGWCC 1 cut(s) 131
BanII GRGCYC 2 cut(s) 66, 274
Bbv12I GWGCWC 3 cut(s) 66, 129, 274
BbvCI CCTCAGC 1 cut(s) 218
BccI CCATC 2 cut(s) 101, 113
BciT130I CCWGG 2 cut(s) 100, 154
Bme1390I CCNGG 2 cut(s) 100, 154
Bme18I GGWCC 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 102, 131
BmrFI CCNGG 2 cut(s) 100, 154
BmsI GCATC 1 cut(s) 33
Bpu10I CCTNAGC 2 cut(s) 78, 218
BsaJI CCNNGG 2 cut(s) 99, 153
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 153
BseBI CCWGG 2 cut(s) 100, 154
BseDI CCNNGG 2 cut(s) 99, 153
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 99, 153
BseMII CTCAG 4 cut(s) 69, 209, 259, 287
BshFI GGCC 1 cut(s) 104
BsiHKAI GWGCWC 3 cut(s) 66, 129, 274
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 99, 153
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 66, 129, 274
Bsp1407I TGTACA 1 cut(s) 288
Bsp143I GATC 2 cut(s) 15, 157
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 4 cut(s) 70, 210, 258, 286
BspPI GGATC 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 288
BssECI CCNNGG 2 cut(s) 99, 153
BssMI GATC 2 cut(s) 15, 157
Bst2UI CCWGG 2 cut(s) 100, 154
Bst4CI ACNGT 1 cut(s) 131
BstAUI TGTACA 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 4 cut(s) 78, 218, 245, 273
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 2 cut(s) 18, 160
BstMBI GATC 2 cut(s) 15, 157
BstNI CCWGG 2 cut(s) 100, 154
BstSCI CCNGG 2 cut(s) 98, 152
BsuRI GGCC 1 cut(s) 104
BtgZI GCGATG 1 cut(s) 10
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 336
Cfr13I GGNCC 2 cut(s) 102, 131
Csp6I GTAC 1 cut(s) 289
CviAII CATG 2 cut(s) 205, 263
CviJI RGCY 6 cut(s) 64, 104, 244, 272, 328, 334
CviKI_1 RGCY 6 cut(s) 64, 104, 244, 272, 328, 334
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 4 cut(s) 78, 218, 245, 273
DpnI GATC 2 cut(s) 17, 159
DpnII GATC 2 cut(s) 15, 157
Ecl136II GAGCTC 2 cut(s) 64, 272
Eco24I GRGCYC 2 cut(s) 66, 274
Eco47I GGWCC 1 cut(s) 131
Eco53kI GAGCTC 2 cut(s) 64, 272
EcoICRI GAGCTC 2 cut(s) 64, 272
EcoRII CCWGG 2 cut(s) 98, 152
EcoT38I GRGCYC 2 cut(s) 66, 274
FaeI CATG 2 cut(s) 208, 266
FaiI YATR 4 cut(s) 59, 206, 256, 264
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 1 cut(s) 22
FatI CATG 2 cut(s) 204, 262
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 2 cut(s) 66, 274
HaeIII GGCC 1 cut(s) 104
Hin1II CATG 2 cut(s) 208, 266
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 1 cut(s) 344
HphI GGTGA 2 cut(s) 88, 130
Hpy166II GTNNAC 3 cut(s) 189, 291, 303
Hpy188I TCNGA 5 cut(s) 33, 48, 148, 248, 276
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 3 cut(s) 189, 291, 303
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 24, 258
HpyF3I CTNAG 4 cut(s) 78, 218, 245, 273
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 208, 266
Kzo9I GATC 2 cut(s) 15, 157
LmnI GCTCC 2 cut(s) 124, 269
LpnPI CCDG 7 cut(s) 4, 85, 90, 112, 139, 166, 348
LweI GCATC 1 cut(s) 33
MaeII ACGT 1 cut(s) 162
MalI GATC 2 cut(s) 17, 159
MboI GATC 2 cut(s) 15, 157
MboII GAAGA 2 cut(s) 100, 220
MhlI GDGCHC 3 cut(s) 66, 129, 274
MnlI CCTC 7 cut(s) 54, 144, 176, 192, 213, 222, 228
MspR9I CCNGG 2 cut(s) 100, 154
MvaI CCWGG 2 cut(s) 100, 154
NdeII GATC 2 cut(s) 15, 157
NlaIII CATG 2 cut(s) 208, 266
PfeI GAWTC 1 cut(s) 344
PflFI GACNNNGTC 1 cut(s) 116
Psp124BI GAGCTC 2 cut(s) 66, 274
Psp6I CCWGG 2 cut(s) 98, 152
PspGI CCWGG 2 cut(s) 98, 152
PspPI GGNCC 2 cut(s) 102, 131
PsyI GACNNNGTC 1 cut(s) 116
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SacI GAGCTC 2 cut(s) 66, 274
Sau3AI GATC 2 cut(s) 15, 157
Sau96I GGNCC 2 cut(s) 102, 131
ScrFI CCNGG 2 cut(s) 100, 154
SduI GDGCHC 3 cut(s) 66, 129, 274
SetI ASST 9 cut(s) 23, 46, 66, 79, 155, 165, 224, 246, 274
SfaNI GCATC 1 cut(s) 33
SinI GGWCC 1 cut(s) 131
SstI GAGCTC 2 cut(s) 66, 274
StyD4I CCNGG 2 cut(s) 98, 152
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 111
TatI WGTACW 1 cut(s) 288
TfiI GAWTC 1 cut(s) 344
TspDTI ATGAA 2 cut(s) 65, 221
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.