FvH4_1g14970

Dof zinc finger protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
8408573 .. 8410153
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14970.t1

Sequence Viewer

Length: 999 bp
ATGATCCAAGAACTGTTCGGTGGCGCAGGGTTTAATATAGGAGGAGTAGCAGGAGGAGGAGGAGGAGGAGGAGCAGAGAGGAAAATCTCCATTTCTTCTTCTTCTACTTCTCTTTCGGCTTCGCCATCGCCGTCTCCATCTTCTTCCGCTACTACAACTACCACCGCTGCTGCCGCGGCCGGTGCAACAGCGAATTCAGAGAACTTGAGATGCCCGAGATGCGATTCTGCCAACACCAAGTTCTGTTACTACAACAACTACAACCTCACGCAGCCCCGCCACTTCTGCAAGACTTGCCGCCGCTACTGGACCAAGGGAGGAGCTCTAAGGAATGTTCCGATTGGGGGCGGATGCCGGAAAAACAAGAGTGGTACCATCTCAACATCAATAAGCAAGACAGCTGTGGCCGGGAAGATGAAATCAATGGCGTCGGAGATCGGGAGGTCCGGATTCGGACTTGGGTTTGATCACGAGGTGCAAGCAAGTCCTATACTGTGGGGTTCACCTCAGAATTCCCATATCCTAGCTCTTCTAAGATCCAGCACTCCAAACCCTAACCCTAACCCTAATGTTCAACTGTGTACTAATTCTGTGAAGGAAGAGGGGGGCATGAGTATGATTGGTTCCCACATGATGAGTGAGTCTTCTGGAGCTGGAAATGATGCAATGACAGCTCGGTCGACCTTGGGTTTGGATCCGCTGAGTTCTTTCTGGAGAAACAATCAGAACGTTCAACCTCCGCACCAGCAACAGAATGGTAATTTCATACTTGGGCATGAGGTTCATAGCAACCAGGGAATTCAGGAACTCTTTCAGAGGCTTAGATCATCTTCATCAGCTAGTTATTATTCACATGATCTTAACAATGGAGTTTCTTCATCATCTACTTCATCGATTTTGGAGGCGGCTCCGGCTGTTGGTGGTGAATTGGGTTATAACTGGAACCCGGCGTTTACTTGGTCCGATCAGCTCCCTACAACAAACGGTGCATACCCTTAA

Protein Analysis

333

Amino Acids

34.77

Weight (kDa)

8.98

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 68 - 123 4.2e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015517)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 936
AasI GACNNNNNNGTC 1 cut(s) 676
Acc65I GGTACC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 371
AccI GTMKAC 1 cut(s) 680
AccII CGCG 1 cut(s) 176
AccIII TCCGGA 1 cut(s) 446
AclI AACGTT 1 cut(s) 729
AclWI GGATC 3 cut(s) 531, 689, 702
AcoI YGGCCR 2 cut(s) 177, 405
AcsI RAATTY 3 cut(s) 193, 511, 798
AcyI GRCGYC 1 cut(s) 428
AdeI CACNNNGTG 1 cut(s) 475
AfaI GTAC 2 cut(s) 373, 583
AfiI CCNNNNNNNGG 2 cut(s) 344, 917
AgsI TTSAA 2 cut(s) 575, 734
AjnI CCWGG 1 cut(s) 792
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 7 cut(s) 323, 401, 527, 653, 674, 839, 970
AluI AGCT 7 cut(s) 323, 401, 527, 653, 674, 839, 970
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 3 cut(s) 531, 689, 702
Ama87I CYCGRG 1 cut(s) 214
Aor13HI TCCGGA 1 cut(s) 446
AoxI GGCC 2 cut(s) 177, 405
ApeKI GCWGC 3 cut(s) 167, 170, 271
ApoI RAATTY 3 cut(s) 193, 511, 798
ArsI GACNNNNNNTTYG 2 cut(s) 673, 705
Asp700I GAANNNNTTC 1 cut(s) 810
Asp718I GGTACC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 309, 444, 960
AsuC2I CCSGG 2 cut(s) 409, 947
AsuHPI GGTGA 2 cut(s) 495, 935
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 3 cut(s) 309, 444, 960
BamHI GGATCC 1 cut(s) 694
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 325
BauI CACGAG 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 3 cut(s) 154, 157, 283
BccI CCATC 3 cut(s) 133, 145, 383
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 794
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 2 cut(s) 409, 947
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 524, 840
BisI GCNGC 8 cut(s) 168, 171, 174, 177, 272, 298, 301, 906
BlsI GCNGC 8 cut(s) 169, 172, 175, 178, 273, 299, 302, 907
Bme1390I CCNGG 3 cut(s) 409, 794, 947
Bme18I GGWCC 3 cut(s) 309, 444, 960
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 3 cut(s) 309, 444, 960
BmiI GGNNCC 5 cut(s) 373, 625, 696, 909, 944
BmrFI CCNGG 3 cut(s) 409, 794, 947
BmsI GCATC 4 cut(s) 200, 209, 341, 652
BpiI GAAGAC 1 cut(s) 636
BpmI CTGGAG 2 cut(s) 669, 733
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 2 cut(s) 409, 947
Bsa29I ATCGAT 1 cut(s) 893
BsaHI GRCGYC 1 cut(s) 428
BsaJI CCNNGG 4 cut(s) 174, 312, 684, 793
BsaWI WCCGGW 1 cut(s) 446
Bsc4I CCNNNNNNNGG 2 cut(s) 344, 917
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 311, 944
Bse3DI GCAATG 1 cut(s) 672
BseAI TCCGGA 1 cut(s) 446
BseBI CCWGG 1 cut(s) 794
BseCI ATCGAT 1 cut(s) 893
BseDI CCNNGG 4 cut(s) 174, 312, 684, 793
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 344, 917
BseMI GCAATG 1 cut(s) 672
BseMII CTCAG 2 cut(s) 521, 692
BseNI ACTGG 2 cut(s) 311, 944
BseRI GAGGAG 8 cut(s) 57, 69, 72, 75, 78, 81, 84, 333
BseX3I CGGCCG 1 cut(s) 177
BseXI GCAGC 3 cut(s) 154, 157, 283
Bsh1236I CGCG 1 cut(s) 176
Bsh1285I CGRYCG 2 cut(s) 180, 680
BshFI GGCC 2 cut(s) 179, 407
BshNI GGYRCC 1 cut(s) 371
BshVI ATCGAT 1 cut(s) 893
BsiEI CGRYCG 2 cut(s) 180, 680
BsiHKAI GWGCWC 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 6 cut(s) 180, 355, 408, 447, 911, 947
BslI CCNNNNNNNGG 2 cut(s) 344, 917
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsnI GGCC 2 cut(s) 179, 407
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 446
Bsp143I GATC 8 cut(s) 3, 435, 466, 536, 694, 824, 856, 964
BspANI GGCC 2 cut(s) 179, 407
BspCNI CTCAG 2 cut(s) 520, 693
BspDI ATCGAT 1 cut(s) 893
BspEI TCCGGA 1 cut(s) 446
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 5 cut(s) 373, 625, 696, 909, 944
BspPI GGATC 3 cut(s) 531, 689, 702
BspQI GCTCTTC 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 672
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 2 cut(s) 311, 944
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 4 cut(s) 174, 312, 684, 793
BssMI GATC 8 cut(s) 3, 435, 466, 536, 694, 824, 856, 964
BssNI GRCGYC 1 cut(s) 428
BssSI CACGAG 1 cut(s) 470
BssT1I CCWWGG 2 cut(s) 312, 684
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 1 cut(s) 794
Bst4CI ACNGT 4 cut(s) 15, 495, 579, 986
Bst6I CTCTTC 2 cut(s) 534, 594
BstACI GRCGYC 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 5 cut(s) 326, 507, 533, 701, 821
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 356
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 8 cut(s) 6, 438, 469, 539, 697, 827, 859, 967
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 8 cut(s) 3, 435, 466, 536, 694, 824, 856, 964
BstMCI CGRYCG 2 cut(s) 180, 680
BstMWI GCNNNNNNNGC 8 cut(s) 173, 176, 182, 219, 285, 294, 671, 911
BstNI CCWGG 1 cut(s) 794
BstSCI CCNGG 3 cut(s) 407, 792, 945
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 3 cut(s) 154, 157, 283
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 2 cut(s) 536, 694
BstYI RGATCY 2 cut(s) 536, 694
BstZI CGGCCG 1 cut(s) 177
Bsu15I ATCGAT 1 cut(s) 893
BsuRI GGCC 2 cut(s) 179, 407
BsuTUI ATCGAT 1 cut(s) 893
BtgI CCRYGG 1 cut(s) 174
BtgZI GCGATG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 480
CfoI GCGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 3 cut(s) 309, 444, 960
Cfr42I CCGCGG 1 cut(s) 177
ClaI ATCGAT 1 cut(s) 893
CseI GACGC 1 cut(s) 417
Csp6I GTAC 2 cut(s) 372, 582
CviAII CATG 4 cut(s) 610, 631, 776, 854
CviQI GTAC 2 cut(s) 372, 582
DdeI CTNAG 5 cut(s) 326, 507, 533, 701, 821
DpnI GATC 8 cut(s) 5, 437, 468, 538, 696, 826, 858, 966
DpnII GATC 8 cut(s) 3, 435, 466, 536, 694, 824, 856, 964
DraIII CACNNNGTG 1 cut(s) 475
DrdI GACNNNNNNGTC 1 cut(s) 676
DseDI GACNNNNNNGTC 1 cut(s) 676
EaeI YGGCCR 2 cut(s) 177, 405
EagI CGGCCG 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 534, 594
EarI CTCTTC 2 cut(s) 534, 594
EciI GGCGGA 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 323
EclXI CGGCCG 1 cut(s) 177
Eco130I CCWWGG 2 cut(s) 312, 684
Eco24I GRGCYC 1 cut(s) 325
Eco47I GGWCC 3 cut(s) 309, 444, 960
Eco52I CGGCCG 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 323
EcoRI GAATTC 3 cut(s) 193, 511, 798
EcoRII CCWGG 1 cut(s) 792
EcoT14I CCWWGG 2 cut(s) 312, 684
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 2 cut(s) 312, 684
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 4 cut(s) 613, 634, 779, 857
FatI CATG 4 cut(s) 609, 630, 775, 853
FauI CCCGC 1 cut(s) 284
FbaI TGATCA 1 cut(s) 466
FblI GTMKAC 1 cut(s) 680
Fnu4HI GCNGC 8 cut(s) 168, 171, 174, 177, 272, 298, 301, 906
FokI GGATG 1 cut(s) 363
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 8 cut(s) 168, 171, 174, 177, 272, 298, 301, 906
FspBI CTAG 2 cut(s) 524, 840
GlaI GCGC 1 cut(s) 25
GluI GCNGC 8 cut(s) 168, 171, 174, 177, 272, 298, 301, 906
GsuI CTGGAG 2 cut(s) 669, 733
HaeIII GGCC 2 cut(s) 179, 407
HapII CCGG 6 cut(s) 180, 355, 408, 447, 911, 947
HgaI GACGC 1 cut(s) 417
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 4 cut(s) 613, 634, 779, 857
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HinfI GANTC 3 cut(s) 224, 450, 641
HpaII CCGG 6 cut(s) 180, 355, 408, 447, 911, 947
HphI GGTGA 2 cut(s) 495, 935
Hpy166II GTNNAC 4 cut(s) 503, 582, 681, 954
Hpy188I TCNGA 8 cut(s) 199, 339, 433, 455, 510, 726, 816, 964
Hpy188III TCNNGA 6 cut(s) 439, 447, 470, 648, 712, 803
Hpy8I GTNNAC 4 cut(s) 503, 582, 681, 954
Hpy99I CGWCG 1 cut(s) 433
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 4 cut(s) 15, 495, 579, 986
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 5 cut(s) 185, 288, 478, 665, 989
HpyF10VI GCNNNNNNNGC 8 cut(s) 173, 176, 182, 219, 285, 294, 671, 911
HpyF3I CTNAG 5 cut(s) 326, 507, 533, 701, 821
HpySE526I ACGT 1 cut(s) 729
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 4 cut(s) 613, 634, 779, 857
HspAI GCGC 1 cut(s) 24
Kpn2I TCCGGA 1 cut(s) 446
KpnI GGTACC 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 466
KspI CCGCGG 1 cut(s) 177
Kzo9I GATC 8 cut(s) 3, 435, 466, 536, 694, 824, 856, 964
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 5 cut(s) 71, 320, 650, 913, 975
Lsp1109I GCAGC 3 cut(s) 154, 157, 283
LweI GCATC 4 cut(s) 200, 209, 341, 652
MaeI CTAG 2 cut(s) 524, 840
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 1 cut(s) 245
MalI GATC 8 cut(s) 5, 437, 468, 538, 696, 826, 858, 966
MboI GATC 8 cut(s) 3, 435, 466, 536, 694, 824, 856, 964
MflI RGATCY 2 cut(s) 536, 694
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 6 cut(s) 193, 511, 586, 760, 798, 926
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 1 cut(s) 411
MroI TCCGGA 1 cut(s) 446
MroXI GAANNNNTTC 1 cut(s) 810
MseI TTAA 3 cut(s) 33, 861, 997
MslI CAYNNNNRTG 1 cut(s) 614
MspA1I CMGCKG 4 cut(s) 167, 176, 401, 700
MspI CCGG 6 cut(s) 180, 355, 408, 447, 911, 947
MspR9I CCNGG 3 cut(s) 409, 794, 947
MvaI CCWGG 1 cut(s) 794
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 8 cut(s) 173, 176, 182, 219, 285, 294, 671, 911
NciI CCSGG 2 cut(s) 409, 947
NdeII GATC 8 cut(s) 3, 435, 466, 536, 694, 824, 856, 964
NlaIII CATG 4 cut(s) 613, 634, 779, 857
NlaIV GGNNCC 5 cut(s) 373, 625, 696, 909, 944
PciSI GCTCTTC 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 2 cut(s) 224, 450
PkrI GCNGC 8 cut(s) 169, 172, 175, 178, 273, 299, 302, 907
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
PsiI TTATAA 1 cut(s) 936
Psp124BI GAGCTC 1 cut(s) 325
Psp1406I AACGTT 1 cut(s) 729
Psp6I CCWGG 1 cut(s) 792
PspGI CCWGG 1 cut(s) 792
PspN4I GGNNCC 5 cut(s) 373, 625, 696, 909, 944
PspPI GGNCC 3 cut(s) 309, 444, 960
PsrI GAACNNNNNNTAC 2 cut(s) 607, 639
PsuI RGATCY 2 cut(s) 536, 694
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 2 cut(s) 373, 583
RsaNI GTAC 2 cut(s) 372, 582
RseI CAYNNNNRTG 1 cut(s) 614
SacI GAGCTC 1 cut(s) 325
SacII CCGCGG 1 cut(s) 177
SalI GTCGAC 1 cut(s) 679
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 3 cut(s) 33, 861, 997
SatI GCNGC 8 cut(s) 168, 171, 174, 177, 272, 298, 301, 906
Sau3AI GATC 8 cut(s) 3, 435, 466, 536, 694, 824, 856, 964
Sau96I GGNCC 3 cut(s) 309, 444, 960
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 3 cut(s) 409, 794, 947
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 4 cut(s) 200, 209, 341, 652
Sfr303I CCGCGG 1 cut(s) 177
SgrBI CCGCGG 1 cut(s) 177
SinI GGWCC 3 cut(s) 309, 444, 960
SmiMI CAYNNNNRTG 1 cut(s) 614
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 6 cut(s) 193, 511, 586, 760, 798, 926
SspMI CTAG 2 cut(s) 524, 840
SstI GAGCTC 1 cut(s) 325
StyD4I CCNGG 3 cut(s) 407, 792, 945
StyI CCWWGG 2 cut(s) 312, 684
TaaI ACNGT 4 cut(s) 15, 495, 579, 986
TaiI ACGT 1 cut(s) 732
TaqI TCGA 2 cut(s) 680, 893
TaqII GACCGA 1 cut(s) 666
TasI AATT 6 cut(s) 193, 511, 586, 760, 798, 926
TatI WGTACW 1 cut(s) 581
TauI GCSGC 5 cut(s) 176, 179, 300, 303, 908
TfiI GAWTC 2 cut(s) 224, 450
Tru1I TTAA 3 cut(s) 33, 861, 997
Tru9I TTAA 3 cut(s) 33, 861, 997
TseI GCWGC 3 cut(s) 167, 170, 271
TspDTI ATGAA 6 cut(s) 431, 754, 773, 822, 867, 879
VpaK11BI GGWCC 3 cut(s) 309, 444, 960
XapI RAATTY 3 cut(s) 193, 511, 798
XcmI CCANNNNNNNNNTGG 1 cut(s) 752
XmiI GTMKAC 1 cut(s) 680
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 2 cut(s) 524, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.