Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015517

Physical Location & Seq

Genomic Coordinates Forward (+)

24268103 .. 24269696

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1276300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGATCCAAGAACTGTTTGGAGGTGCAGGCCTTAATAACATAGCAGGAGGAGGAGAGAGGAAATCGCTCACCTTTCATGGTGGTACTACTTCTTCTCCTTCTCTGTCTCCTTCACCATCCCCTTCTTCCTCAACAACTACCACCGCCACCGCCACCACAACAGCCACGGCAGGTTTATCAAATACTGAGAACTTGAGATGCCCAAGATGCGATTCTTCCAACACCAAGTTCTGCTACTACAACAATTACAACCTCACTCAACCCCGCCACTTCTGCAAGACCTGTCGCCGCTACTGGACAAAAGGAGGAGCCCTCCGCAACGTTCCAATTGGCGGCGGCTATAGAAAAAACAAGAGTGTCACCGGGTCAACGGCTTCCATAGGCAAGACCGCCGCAGGGAAGTTGAAAACGGTGGTGTCAGAGATTGGCCGTTCAGGATTTGGTGCGGGGTTCGATCAGGAGGTCCAAGCAAGCCCAATACTATGGGGCTCGTCCCAGAATTCTCATTTACTAGCCCTGTTAAAAGCCAGTCATCATCAAAACCCTAACCCTAATCAACTTTGTAATTCTGTAAATGTGAAGGAAGAGGGAGGTATGAATATGATTGGGTCCCACATGATGACTACTGAGGCAATTGCAATGAGTACTGCTCGAACCCTGGGTTTGGATCCAGTGTGCCAGGCTCCTTCACTTGGCCTGTGCAGCTCTTTCTGGAGAAACAACAACCAATATCAACCACCTCCAAGCCATCACCAACAAAACGGTTTCATTGTTGGTCATGAAGTTCAAAGCAGCAATATTGGAATTCAAGAATTGTTTCAGAGGCTAACACCATCAACATCACAATCATGTAGTTATTATTCTGACCAACTAAATAATGTGGTGGCGTCTTCATCCTCCTCATCATTGTCTTCATATTCCACGTCATCGATTTTGGATTCGTCTCCGGTGGTTGGCGGTGGCGAAATGGGTTACAGCTGGAACCCGGCGTTTACCGCGTGGTCATTTGATCTTCCGACAACCAATGGTGCATATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010118 GO:0010374 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0140110 GO:1901363 GO:1902066 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

347

Amino Acids

36.76

Weight (kDa)

8.83

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	64 - 119	7.1e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14970
malus_domestica	MD02G1163500.v1.1 MD15G1276300.v1.1
prunus_persica	Prupe.7G140700_v2.0.a1
pyrus_communis	pycom02g12950 pycom15g23940
rosa_chinensis	RchiOBHm_Chr2g0104031
rosa_laevigata	RLG00000017279
rosa_multiflora	Rmu_sc0001720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00139190
rosa_rugosa	Rorug02G0118700
rosa_samantha	Rh2AG168000 Rh2BG175000 Rh2CG173800 Rh2DG173500
rosa_wichuraiana	Rw2G013140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	161
AccII	CGCG	1 cut(s)	998
AclI	AACGTT	1 cut(s)	321
AclWI	GGATC	2 cut(s)	662, 675
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	2 cut(s)	499, 804
AcyI	GRCGYC	1 cut(s)	887
AfaI	GTAC	2 cut(s)	85, 646
AfiI	CCNNNNNNNGG	5 cut(s)	332, 396, 664, 692, 953
AgsI	TTSAA	3 cut(s)	406, 788, 809
AjiI	CACGTC	1 cut(s)	924
AjnI	CCWGG	2 cut(s)	657, 678
AjuI	GAANNNNNNNTTGG	4 cut(s)	196, 212, 228, 244
AluBI	AGCT	2 cut(s)	705, 978
AluI	AGCT	2 cut(s)	705, 978
Alw26I	GTCTC	2 cut(s)	111, 948
AlwI	GGATC	2 cut(s)	662, 675
AoxI	GGCC	3 cut(s)	28, 427, 694
ApeKI	GCWGC	2 cut(s)	702, 792
ApoI	RAATTY	2 cut(s)	499, 804
Asp700I	GAANNNNTTC	1 cut(s)	816
AspS9I	GGNCC	2 cut(s)	463, 609
AsuC2I	CCSGG	2 cut(s)	364, 986
AsuHPI	GGTGA	4 cut(s)	61, 105, 352, 743
AvaII	GGWCC	2 cut(s)	463, 609
BamHI	GGATCC	1 cut(s)	667
BanII	GRGCYC	2 cut(s)	313, 491
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BbsI	GAAGAC	2 cut(s)	882, 903
BbvI	GCAGC	2 cut(s)	714, 804
BccI	CCATC	3 cut(s)	124, 756, 841
BceAI	ACGGC	3 cut(s)	183, 387, 414
BciT130I	CCWGG	2 cut(s)	659, 680
BcnI	CCSGG	2 cut(s)	364, 986
BcoDI	GTCTC	2 cut(s)	111, 948
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	161
BisI	GCNGC	6 cut(s)	289, 334, 337, 393, 703, 793
BlsI	GCNGC	6 cut(s)	290, 335, 338, 394, 704, 794
BmcAI	AGTACT	1 cut(s)	646
Bme1390I	CCNGG	4 cut(s)	364, 659, 680, 986
Bme18I	GGWCC	2 cut(s)	463, 609
BmgBI	CACGTC	1 cut(s)	924
BmgT120I	GGNCC	2 cut(s)	463, 609
BmiI	GGNNCC	6 cut(s)	310, 610, 611, 669, 684, 983
BmrFI	CCNGG	4 cut(s)	364, 659, 680, 986
BmsI	GCATC	2 cut(s)	188, 197
BpiI	GAAGAC	2 cut(s)	882, 903
BplI	GAGNNNNNCTC	4 cut(s)	297, 329, 634, 666
BpmI	CTGGAG	1 cut(s)	733
BpuEI	CTTGAG	1 cut(s)	214
BpuMI	CCSGG	2 cut(s)	364, 986
Bsa29I	ATCGAT	1 cut(s)	929
BsaHI	GRCGYC	1 cut(s)	887
BsaJI	CCNNGG	3 cut(s)	165, 657, 658
BsaWI	WCCGGW	1 cut(s)	946
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	5 cut(s)	332, 396, 664, 692, 953
Bse1I	ACTGG	3 cut(s)	299, 528, 671
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	2 cut(s)	659, 680
BseCI	ATCGAT	1 cut(s)	929
BseDI	CCNNGG	3 cut(s)	165, 657, 658
BseGI	GGATG	2 cut(s)	116, 893
BseLI	CCNNNNNNNGG	5 cut(s)	332, 396, 664, 692, 953
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	2 cut(s)	177, 618
BseNI	ACTGG	3 cut(s)	299, 528, 671
BseRI	GAGGAG	4 cut(s)	63, 66, 321, 889
BseXI	GCAGC	2 cut(s)	714, 804
BsgI	GTGCAG	2 cut(s)	45, 721
Bsh1236I	CGCG	1 cut(s)	998
BshFI	GGCC	3 cut(s)	30, 429, 696
BshVI	ATCGAT	1 cut(s)	929
BsiSI	CCGG	3 cut(s)	363, 947, 986
BslFI	GGGAC	2 cut(s)	478, 595
BslI	CCNNNNNNNGG	5 cut(s)	332, 396, 664, 692, 953
BsmAI	GTCTC	2 cut(s)	111, 948
BsmBI	CGTCTC	1 cut(s)	948
BsmFI	GGGAC	2 cut(s)	478, 595
BsnI	GGCC	3 cut(s)	30, 429, 696
Bsp1286I	GDGCHC	2 cut(s)	313, 491
Bsp143I	GATC	4 cut(s)	3, 454, 667, 1009
BspANI	GGCC	3 cut(s)	30, 429, 696
BspCNI	CTCAG	2 cut(s)	178, 619
BspDI	ATCGAT	1 cut(s)	929
BspFNI	CGCG	1 cut(s)	998
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	6 cut(s)	310, 610, 611, 669, 684, 983
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	2 cut(s)	662, 675
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	3 cut(s)	299, 528, 671
BssECI	CCNNGG	3 cut(s)	165, 657, 658
BssMI	GATC	4 cut(s)	3, 454, 667, 1009
BssNI	GRCGYC	1 cut(s)	887
Bst2UI	CCWGG	2 cut(s)	659, 680
Bst4CI	ACNGT	3 cut(s)	15, 412, 764
Bst6I	CTCTTC	1 cut(s)	579
BstACI	GRCGYC	1 cut(s)	887
BstC8I	GCNNGC	2 cut(s)	28, 472
BstDEI	CTNAG	2 cut(s)	186, 627
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	116, 893
BstFNI	CGCG	1 cut(s)	998
BstKTI	GATC	4 cut(s)	6, 457, 670, 1012
BstMAI	GTCTC	2 cut(s)	111, 948
BstMBI	GATC	4 cut(s)	3, 454, 667, 1009
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 273, 702, 995
BstNI	CCWGG	2 cut(s)	659, 680
BstSCI	CCNGG	4 cut(s)	362, 657, 678, 984
BstSFI	CTRYAG	1 cut(s)	340
BstUI	CGCG	1 cut(s)	998
BstV1I	GCAGC	2 cut(s)	714, 804
BstV2I	GAAGAC	2 cut(s)	882, 903
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	667
Bsu15I	ATCGAT	1 cut(s)	929
BsuRI	GGCC	3 cut(s)	30, 429, 696
BsuTUI	ATCGAT	1 cut(s)	929
BtgI	CCRYGG	1 cut(s)	165
BtrI	CACGTC	1 cut(s)	924
BtsCI	GGATG	2 cut(s)	116, 893
BtsIMutI	CAGTG	1 cut(s)	678
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	28, 472
CciI	TCATGA	1 cut(s)	778
Cfr13I	GGNCC	2 cut(s)	463, 609
ClaI	ATCGAT	1 cut(s)	929
CseI	GACGC	1 cut(s)	876
Csp6I	GTAC	2 cut(s)	84, 645
CviAII	CATG	4 cut(s)	77, 616, 779, 849
CviQI	GTAC	2 cut(s)	84, 645
DdeI	CTNAG	2 cut(s)	186, 627
DpnI	GATC	4 cut(s)	5, 456, 669, 1011
DpnII	GATC	4 cut(s)	3, 454, 667, 1009
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Eco147I	AGGCCT	1 cut(s)	30
Eco24I	GRGCYC	2 cut(s)	313, 491
Eco47I	GGWCC	2 cut(s)	463, 609
EcoO109I	RGGNCCY	1 cut(s)	609
EcoRI	GAATTC	2 cut(s)	499, 804
EcoRII	CCWGG	2 cut(s)	657, 678
EcoT38I	GRGCYC	2 cut(s)	313, 491
Esp3I	CGTCTC	1 cut(s)	948
FaeI	CATG	4 cut(s)	80, 619, 782, 852
FaqI	GGGAC	2 cut(s)	478, 595
FatI	CATG	4 cut(s)	76, 615, 778, 848
FauI	CCCGC	2 cut(s)	272, 439
Fnu4HI	GCNGC	6 cut(s)	289, 334, 337, 393, 703, 793
FokI	GGATG	2 cut(s)	103, 880
FriOI	GRGCYC	2 cut(s)	313, 491
Fsp4HI	GCNGC	6 cut(s)	289, 334, 337, 393, 703, 793
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	6 cut(s)	289, 334, 337, 393, 703, 793
GsuI	CTGGAG	1 cut(s)	733
HaeIII	GGCC	3 cut(s)	30, 429, 696
HapII	CCGG	3 cut(s)	363, 947, 986
HgaI	GACGC	1 cut(s)	876
Hin1I	GRCGYC	1 cut(s)	887
Hin1II	CATG	4 cut(s)	80, 619, 782, 852
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	2 cut(s)	212, 938
HpaII	CCGG	3 cut(s)	363, 947, 986
HphI	GGTGA	4 cut(s)	61, 105, 352, 743
Hpy166II	GTNNAC	2 cut(s)	369, 993
Hpy188I	TCNGA	4 cut(s)	421, 822, 865, 1017
Hpy188III	TCNNGA	5 cut(s)	435, 458, 712, 779, 809
Hpy8I	GTNNAC	2 cut(s)	369, 993
HpyAV	CCTTC	5 cut(s)	108, 120, 132, 574, 696
HpyCH4III	ACNGT	3 cut(s)	15, 412, 764
HpyCH4IV	ACGT	2 cut(s)	321, 923
HpyCH4V	TGCA	5 cut(s)	26, 276, 638, 702, 1031
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 273, 702, 995
HpyF3I	CTNAG	2 cut(s)	186, 627
HpySE526I	ACGT	2 cut(s)	321, 923
Hsp92I	GRCGYC	1 cut(s)	887
Hsp92II	CATG	4 cut(s)	80, 619, 782, 852
KflI	GGGWCCC	1 cut(s)	609
Kzo9I	GATC	4 cut(s)	3, 454, 667, 1009
LmnI	GCTCC	2 cut(s)	308, 688
Lsp1109I	GCAGC	2 cut(s)	714, 804
LweI	GCATC	2 cut(s)	188, 197
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	2 cut(s)	321, 923
MaeIII	GTNAC	2 cut(s)	358, 971
MalI	GATC	4 cut(s)	5, 456, 669, 1011
MboI	GATC	4 cut(s)	3, 454, 667, 1009
MboII	GAAGA	7 cut(s)	84, 117, 207, 596, 882, 903, 1004
MfeI	CAATTG	2 cut(s)	327, 633
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	2 cut(s)	313, 491
MluCI	AATT	7 cut(s)	244, 327, 499, 565, 633, 804, 812
MmeI	TCCRAC	2 cut(s)	243, 1040
MroXI	GAANNNNTTC	1 cut(s)	816
MseI	TTAA	3 cut(s)	33, 521, 1039
MslI	CAYNNNNRTG	1 cut(s)	847
MspA1I	CMGCKG	1 cut(s)	978
MspI	CCGG	3 cut(s)	363, 947, 986
MspR9I	CCNGG	4 cut(s)	364, 659, 680, 986
MunI	CAATTG	2 cut(s)	327, 633
MvaI	CCWGG	2 cut(s)	659, 680
MvnI	CGCG	1 cut(s)	998
MwoI	GCNNNNNNNGC	4 cut(s)	207, 273, 702, 995
NciI	CCSGG	2 cut(s)	364, 986
NdeII	GATC	4 cut(s)	3, 454, 667, 1009
NlaIII	CATG	4 cut(s)	80, 619, 782, 852
NlaIV	GGNNCC	6 cut(s)	310, 610, 611, 669, 684, 983
NmuCI	GTSAC	1 cut(s)	358
PagI	TCATGA	1 cut(s)	778
PasI	CCCWGGG	1 cut(s)	658
PceI	AGGCCT	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	816
PfeI	GAWTC	2 cut(s)	212, 938
PkrI	GCNGC	6 cut(s)	290, 335, 338, 394, 704, 794
PpuMI	RGGWCCY	1 cut(s)	609
Psp1406I	AACGTT	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	609
Psp6I	CCWGG	2 cut(s)	657, 678
PspGI	CCWGG	2 cut(s)	657, 678
PspN4I	GGNNCC	6 cut(s)	310, 610, 611, 669, 684, 983
PspPI	GGNCC	2 cut(s)	463, 609
PspPPI	RGGWCCY	1 cut(s)	609
PsuI	RGATCY	1 cut(s)	667
PvuII	CAGCTG	1 cut(s)	978
RsaI	GTAC	2 cut(s)	85, 646
RsaNI	GTAC	2 cut(s)	84, 645
RseI	CAYNNNNRTG	1 cut(s)	847
SaqAI	TTAA	3 cut(s)	33, 521, 1039
SatI	GCNGC	6 cut(s)	289, 334, 337, 393, 703, 793
Sau3AI	GATC	4 cut(s)	3, 454, 667, 1009
Sau96I	GGNCC	2 cut(s)	463, 609
ScaI	AGTACT	1 cut(s)	646
ScrFI	CCNGG	4 cut(s)	364, 659, 680, 986
SduI	GDGCHC	2 cut(s)	313, 491
SfaNI	GCATC	2 cut(s)	188, 197
SfcI	CTRYAG	1 cut(s)	340
SinI	GGWCC	2 cut(s)	463, 609
SmiMI	CAYNNNNRTG	1 cut(s)	847
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	7 cut(s)	244, 327, 499, 565, 633, 804, 812
SseBI	AGGCCT	1 cut(s)	30
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	1 cut(s)	512
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	4 cut(s)	362, 657, 678, 984
TaaI	ACNGT	3 cut(s)	15, 412, 764
TaiI	ACGT	2 cut(s)	324, 926
TaqI	TCGA	3 cut(s)	453, 652, 929
TasI	AATT	7 cut(s)	244, 327, 499, 565, 633, 804, 812
TatI	WGTACW	1 cut(s)	644
TauI	GCSGC	4 cut(s)	291, 336, 339, 395
TfiI	GAWTC	2 cut(s)	212, 938
Tru1I	TTAA	3 cut(s)	33, 521, 1039
Tru9I	TTAA	3 cut(s)	33, 521, 1039
TscAI	CASTG	1 cut(s)	678
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	702, 792
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	6 cut(s)	65, 611, 757, 795, 882, 903
TspRI	CASTG	1 cut(s)	678
VpaK11BI	GGWCC	2 cut(s)	463, 609
XapI	RAATTY	2 cut(s)	499, 804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	816
XspI	CTAG	1 cut(s)	512
ZrmI	AGTACT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.