Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0015517

Physical Location & Seq

Genomic Coordinates Forward (+)

13947071 .. 13948105

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1163500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGATCCAAGAACTGTTTGGAGGTGCAGGCCTTAATAACATAGCAGGAGGAGGAGAGAGGAAATCGCTCTCCCTTCATGGTGGTACTACTCCTTCACCTTCTCTTTCTTCTTCACCATCCCCTTCTTGCTCAACAACTACCACCGCCACCACAACAACCACGACAGGTTTATCAAATACGGAGAACTTGAGATGCCCAAGATGCGATTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAACCCCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACAAAAGGAGGGGCCCTCCGGAACGTTCCAATTGGCGGCGGGTGTAGGAAAAACAAGAGTGTCACCGTGTCAACGGCTTCCATAGGCAAGACCGCCGCAGGGAAGTTGAAAACGGTCGTGTCAGAGATTGGCCGGTCAGGATTAGGTGGGGGGTTCGAGCAGGAGGTCCAAGCAAGCCCAATACAGTGGGGTTCGCCCCAGAATTCTCATATACTAGCCCTATTAAGATCCAGTCATCAAAACCCTAACCCTAATCAACTTTGTAATTCTGTAAATGTGAAGGAAGAGGGAGGCATGAATAATATGATTGGGTCCCACATGATGACTACGGAGCCAGCTGCAATGAGTACTGCTCGAACCCTGGGGTTGGATCCAGTATGCGAGGCTCCTTCACTTGGTCTGTGCAGCTCTTTCTGGAGAAACAATAACAACCAAAATCAGCCACCTCCAAGCCATCACCAACAAAACGGTTTCATTGTTGGTCATGAAGTTCAAAGCAGCAATATTGGAATACAAGAATTGTTTCAGAGGCTAAGATCAACAACATCACAATCAGGTAGTTATTATTCCGACCATCTAAATAATGTGGTGATGTCTTCATCCTCCTCATCATTGTCTTCATCTTCCACCTCATCGATTTTGGATTCGGCTCCGGTGGTTGGCGGTGGCGAAATGGGTTACTGGAACCCGGCGTTTACCGCGTGGTCGTCAGATCTTCCAACAACCAATGGTGCATATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010118 GO:0010374 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0140110 GO:1901363 GO:1902066 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

345

Amino Acids

36.51

Weight (kDa)

8.81

Isoelectric Point (pI)

61.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	62 - 117	3.4e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14970
malus_domestica	MD02G1163500.v1.1 MD15G1276300.v1.1
prunus_persica	Prupe.7G140700_v2.0.a1
pyrus_communis	pycom02g12950 pycom15g23940
rosa_chinensis	RchiOBHm_Chr2g0104031
rosa_laevigata	RLG00000017279
rosa_multiflora	Rmu_sc0001720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00139190
rosa_rugosa	Rorug02G0118700
rosa_samantha	Rh2AG168000 Rh2BG175000 Rh2CG173800 Rh2DG173500
rosa_wichuraiana	Rw2G013140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	284
AccII	CGCG	1 cut(s)	992
AccIII	TCCGGA	1 cut(s)	309
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	3 cut(s)	513, 656, 669
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	493
AfaI	GTAC	2 cut(s)	85, 640
AfiI	CCNNNNNNNGG	5 cut(s)	326, 390, 658, 686, 950
AgsI	TTSAA	2 cut(s)	400, 785
AjnI	CCWGG	1 cut(s)	651
AjuI	GAANNNNNNNTTGG	4 cut(s)	190, 206, 222, 238
AluBI	AGCT	2 cut(s)	629, 699
AluI	AGCT	2 cut(s)	629, 699
AlwI	GGATC	3 cut(s)	513, 656, 669
Aor13HI	TCCGGA	1 cut(s)	309
AoxI	GGCC	3 cut(s)	28, 303, 421
ApaI	GGGCCC	1 cut(s)	307
ApeKI	GCWGC	3 cut(s)	629, 696, 789
ApoI	RAATTY	1 cut(s)	493
Asp700I	GAANNNNTTC	1 cut(s)	813
AspS9I	GGNCC	4 cut(s)	303, 304, 457, 603
AsuC2I	CCSGG	1 cut(s)	980
AsuHPI	GGTGA	5 cut(s)	87, 105, 346, 740, 892
AvaII	GGWCC	2 cut(s)	457, 603
BaeGI	GKGCMC	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	307
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BbsI	GAAGAC	2 cut(s)	879, 900
BbvI	GCAGC	3 cut(s)	616, 708, 801
BccI	CCATC	3 cut(s)	124, 753, 873
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	653
BcnI	CCSGG	1 cut(s)	980
BfaI	CTAG	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	284
BglII	AGATCT	1 cut(s)	1003
BisI	GCNGC	7 cut(s)	280, 283, 328, 387, 630, 697, 790
BlsI	GCNGC	7 cut(s)	281, 284, 329, 388, 631, 698, 791
BmcAI	AGTACT	1 cut(s)	640
Bme1390I	CCNGG	2 cut(s)	653, 980
Bme18I	GGWCC	2 cut(s)	457, 603
BmgT120I	GGNCC	4 cut(s)	303, 304, 457, 603
BmiI	GGNNCC	9 cut(s)	304, 305, 604, 605, 624, 663, 678, 942, 977
BmrFI	CCNGG	2 cut(s)	653, 980
BmsI	GCATC	2 cut(s)	182, 191
BpiI	GAAGAC	2 cut(s)	879, 900
BplI	GAGNNNNNCTC	4 cut(s)	291, 323, 628, 660
BpmI	CTGGAG	1 cut(s)	727
BpuEI	CTTGAG	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	980
Bsa29I	ATCGAT	1 cut(s)	926
BsaJI	CCNNGG	2 cut(s)	651, 652
BsaWI	WCCGGW	2 cut(s)	309, 943
Bsc4I	CCNNNNNNNGG	5 cut(s)	326, 390, 658, 686, 950
Bse118I	RCCGGY	1 cut(s)	423
Bse1I	ACTGG	4 cut(s)	293, 522, 665, 977
Bse3DI	GCAATG	1 cut(s)	639
BseAI	TCCGGA	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	653
BseCI	ATCGAT	1 cut(s)	926
BseDI	CCNNGG	2 cut(s)	651, 652
BseGI	GGATG	2 cut(s)	116, 890
BseLI	CCNNNNNNNGG	5 cut(s)	326, 390, 658, 686, 950
BseMI	GCAATG	1 cut(s)	639
BseNI	ACTGG	4 cut(s)	293, 522, 665, 977
BseRI	GAGGAG	3 cut(s)	63, 66, 886
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	3 cut(s)	616, 708, 801
BsgI	GTGCAG	2 cut(s)	45, 715
Bsh1236I	CGCG	1 cut(s)	992
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	30, 305, 423
BshVI	ATCGAT	1 cut(s)	926
BsiEI	CGRYCG	1 cut(s)	408
BsiSI	CCGG	4 cut(s)	310, 424, 944, 980
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	5 cut(s)	326, 390, 658, 686, 950
BsmFI	GGGAC	1 cut(s)	589
BsnI	GGCC	3 cut(s)	30, 305, 423
Bsp120I	GGGCCC	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp13I	TCCGGA	1 cut(s)	309
Bsp143I	GATC	5 cut(s)	3, 518, 661, 827, 1003
BspANI	GGCC	3 cut(s)	30, 305, 423
BspDI	ATCGAT	1 cut(s)	926
BspEI	TCCGGA	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	992
BspHI	TCATGA	1 cut(s)	775
BspLI	GGNNCC	9 cut(s)	304, 305, 604, 605, 624, 663, 678, 942, 977
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	3 cut(s)	513, 656, 669
BsrDI	GCAATG	1 cut(s)	639
BsrFI	RCCGGY	1 cut(s)	423
BsrI	ACTGG	4 cut(s)	293, 522, 665, 977
BssAI	RCCGGY	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	651, 652
BssMI	GATC	5 cut(s)	3, 518, 661, 827, 1003
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	5 cut(s)	15, 358, 406, 477, 761
Bst6I	CTCTTC	1 cut(s)	570
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstC8I	GCNNGC	3 cut(s)	28, 466, 627
BstDEI	CTNAG	1 cut(s)	824
BstF5I	GGATG	2 cut(s)	116, 890
BstFNI	CGCG	1 cut(s)	992
BstKTI	GATC	5 cut(s)	6, 521, 664, 830, 1006
BstMBI	GATC	5 cut(s)	3, 518, 661, 827, 1003
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 267, 276, 989
BstNI	CCWGG	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	651, 978
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	1 cut(s)	992
BstV1I	GCAGC	3 cut(s)	616, 708, 801
BstV2I	GAAGAC	2 cut(s)	879, 900
BstX2I	RGATCY	3 cut(s)	518, 661, 1003
BstXI	CCANNNNNNTGG	1 cut(s)	477
BstYI	RGATCY	3 cut(s)	518, 661, 1003
Bsu15I	ATCGAT	1 cut(s)	926
BsuRI	GGCC	3 cut(s)	30, 305, 423
BsuTUI	ATCGAT	1 cut(s)	926
BtsCI	GGATG	2 cut(s)	116, 890
BtsIMutI	CAGTG	1 cut(s)	482
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	3 cut(s)	28, 466, 627
CciI	TCATGA	1 cut(s)	775
Cfr10I	RCCGGY	1 cut(s)	423
Cfr13I	GGNCC	4 cut(s)	303, 304, 457, 603
ClaI	ATCGAT	1 cut(s)	926
Csp6I	GTAC	2 cut(s)	84, 639
CviAII	CATG	4 cut(s)	77, 586, 610, 776
CviQI	GTAC	2 cut(s)	84, 639
DdeI	CTNAG	1 cut(s)	824
DpnI	GATC	5 cut(s)	5, 520, 663, 829, 1005
DpnII	GATC	5 cut(s)	3, 518, 661, 827, 1003
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco147I	AGGCCT	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	457, 603
EcoO109I	RGGNCCY	3 cut(s)	303, 304, 603
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	307
FaeI	CATG	4 cut(s)	80, 589, 613, 779
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	4 cut(s)	76, 585, 609, 775
FauI	CCCGC	2 cut(s)	266, 323
Fnu4HI	GCNGC	7 cut(s)	280, 283, 328, 387, 630, 697, 790
FokI	GGATG	2 cut(s)	103, 877
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	7 cut(s)	280, 283, 328, 387, 630, 697, 790
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	7 cut(s)	280, 283, 328, 387, 630, 697, 790
GsuI	CTGGAG	1 cut(s)	727
HaeIII	GGCC	3 cut(s)	30, 305, 423
HapII	CCGG	4 cut(s)	310, 424, 944, 980
Hin1II	CATG	4 cut(s)	80, 589, 613, 779
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HinfI	GANTC	2 cut(s)	206, 935
HpaII	CCGG	4 cut(s)	310, 424, 944, 980
HphI	GGTGA	5 cut(s)	87, 105, 346, 740, 892
Hpy166II	GTNNAC	2 cut(s)	363, 987
Hpy188I	TCNGA	4 cut(s)	415, 819, 862, 1003
Hpy188III	TCNNGA	4 cut(s)	310, 429, 706, 776
Hpy8I	GTNNAC	2 cut(s)	363, 987
HpyAV	CCTTC	6 cut(s)	83, 102, 108, 132, 565, 690
HpyCH4III	ACNGT	5 cut(s)	15, 358, 406, 477, 761
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	5 cut(s)	26, 270, 632, 696, 1025
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 267, 276, 989
HpyF3I	CTNAG	1 cut(s)	824
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	4 cut(s)	80, 589, 613, 779
KflI	GGGWCCC	1 cut(s)	603
Kpn2I	TCCGGA	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	3, 518, 661, 827, 1003
LmnI	GCTCC	3 cut(s)	622, 682, 946
Lsp1109I	GCAGC	3 cut(s)	616, 708, 801
LweI	GCATC	2 cut(s)	182, 191
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	352, 968
MalI	GATC	5 cut(s)	5, 520, 663, 829, 1005
MboI	GATC	5 cut(s)	3, 518, 661, 827, 1003
MboII	GAAGA	8 cut(s)	99, 102, 201, 587, 879, 900, 906, 998
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	3 cut(s)	518, 661, 1003
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	4 cut(s)	321, 493, 556, 809
MmeI	TCCRAC	4 cut(s)	237, 639, 885, 1034
MroI	TCCGGA	1 cut(s)	309
MroXI	GAANNNNTTC	1 cut(s)	813
MseI	TTAA	3 cut(s)	33, 515, 1033
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	4 cut(s)	310, 424, 944, 980
MspR9I	CCNGG	2 cut(s)	653, 980
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	1 cut(s)	992
MwoI	GCNNNNNNNGC	4 cut(s)	201, 267, 276, 989
NciI	CCSGG	1 cut(s)	980
NdeII	GATC	5 cut(s)	3, 518, 661, 827, 1003
NlaIII	CATG	4 cut(s)	80, 589, 613, 779
NlaIV	GGNNCC	9 cut(s)	304, 305, 604, 605, 624, 663, 678, 942, 977
NmuCI	GTSAC	1 cut(s)	352
PagI	TCATGA	1 cut(s)	775
PasI	CCCWGGG	1 cut(s)	652
PceI	AGGCCT	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	813
PfeI	GAWTC	2 cut(s)	206, 935
PkrI	GCNGC	7 cut(s)	281, 284, 329, 388, 631, 698, 791
PpuMI	RGGWCCY	1 cut(s)	603
Psp1406I	AACGTT	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	9 cut(s)	304, 305, 604, 605, 624, 663, 678, 942, 977
PspOMI	GGGCCC	1 cut(s)	303
PspPI	GGNCC	4 cut(s)	303, 304, 457, 603
PspPPI	RGGWCCY	1 cut(s)	603
PsuI	RGATCY	3 cut(s)	518, 661, 1003
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	2 cut(s)	85, 640
RsaNI	GTAC	2 cut(s)	84, 639
SaqAI	TTAA	3 cut(s)	33, 515, 1033
SatI	GCNGC	7 cut(s)	280, 283, 328, 387, 630, 697, 790
Sau3AI	GATC	5 cut(s)	3, 518, 661, 827, 1003
Sau96I	GGNCC	4 cut(s)	303, 304, 457, 603
ScaI	AGTACT	1 cut(s)	640
ScrFI	CCNGG	2 cut(s)	653, 980
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	182, 191
SinI	GGWCC	2 cut(s)	457, 603
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	4 cut(s)	321, 493, 556, 809
SseBI	AGGCCT	1 cut(s)	30
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	1 cut(s)	506
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	651, 978
TaaI	ACNGT	5 cut(s)	15, 358, 406, 477, 761
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	3 cut(s)	447, 646, 926
TasI	AATT	4 cut(s)	321, 493, 556, 809
TatI	WGTACW	1 cut(s)	638
TauI	GCSGC	4 cut(s)	282, 285, 330, 389
TfiI	GAWTC	2 cut(s)	206, 935
Tru1I	TTAA	3 cut(s)	33, 515, 1033
Tru9I	TTAA	3 cut(s)	33, 515, 1033
TscAI	CASTG	1 cut(s)	482
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	3 cut(s)	629, 696, 789
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	6 cut(s)	65, 602, 754, 792, 879, 900
TspGWI	ACGGA	2 cut(s)	194, 635
TspRI	CASTG	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	457, 603
XapI	RAATTY	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	813
XspI	CTAG	1 cut(s)	506
ZrmI	AGTACT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.