Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001720.1

Orthogroup ID

OG0015517

Physical Location & Seq

Genomic Coordinates Reverse (-)

14431 .. 15408

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001720.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgatccaagaactgttcggaggcgcaggctttaatacaggaggagtaggaggaggaggagagaggaaaatctccatttcttcttcttctacttctctttcgccttcgccgtctccttcttcttccactactactactaccaccgctgctgccgctgcaacagcgaatacagagaacttgagatgccccagatgcgattctgccaacaccaagttctgttactacaacaactacaacctcacgcagccccgccacttctgcaagacttgccgccgctactggaccaagggaggagccctaaggaatgttccgattgggggtggatgccggaaaaacaagaatggtaccatgtcaacatcaataagcaagacagctgtggccgggaagttgaaaacaatggcgtcggagatcgggaggtccgggttcggactcgggtttgatcacgaagtgcaagcaagtccaatactgtggggttcacctcagaattcccatatcctagctctactaagatccagcactccaaaccctaaccctaaccctaatgttcaactgtgtactaattcggtgaaggaagaggggggcatgaatatgattgggtcccacatgatgagtgagtcttctggagctggaaatgatgcaatgacagctcggaccttggggttggatccgctgagttctttctggagaaacaaccagaatgttcaacctccacaccaccaccaacaacagaatggtaatttcttacttgggcatgaggttcaaagcaaccaaggaattcaggaactatttcagaggcttagatcatcctcttcatcaggtagttattattcgcatgatcttaataatggggtttcttcatcttctacatcatcgattttggaggcggctccggctgttggtggtgaattgggttataactggaacccagcgtttacttggtccgatcagctccctacaacaaatggtgcatacccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010118 GO:0010374 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0140110 GO:1901363 GO:1902066 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

325

Amino Acids

34.52

Weight (kDa)

8.98

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14970
malus_domestica	MD02G1163500.v1.1 MD15G1276300.v1.1
prunus_persica	Prupe.7G140700_v2.0.a1
pyrus_communis	pycom02g12950 pycom15g23940
rosa_chinensis	RchiOBHm_Chr2g0104031
rosa_laevigata	RLG00000017279
rosa_multiflora	Rmu_sc0001720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00139190
rosa_rugosa	Rorug02G0118700
rosa_samantha	Rh2AG168000 Rh2BG175000 Rh2CG173800 Rh2DG173500
rosa_wichuraiana	Rw2G013140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	915
Acc65I	GGTACC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	344
AciI	CCGC	7 cut(s)	144, 153, 250, 271, 274, 668, 884
AclWI	GGATC	3 cut(s)	504, 659, 672
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	2 cut(s)	484, 774
AcyI	GRCGYC	1 cut(s)	401
AdeI	CACNNNGTG	1 cut(s)	448
AfaI	GTAC	2 cut(s)	346, 556
AfiI	CCNNNNNNNGG	2 cut(s)	317, 896
AgsI	TTSAA	4 cut(s)	391, 548, 704, 761
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	5 cut(s)	374, 500, 626, 647, 949
AluI	AGCT	5 cut(s)	374, 500, 626, 647, 949
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	3 cut(s)	504, 659, 672
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	4 cut(s)	146, 149, 155, 244
ApoI	RAATTY	2 cut(s)	484, 774
Asp700I	GAANNNNTTC	1 cut(s)	786
Asp718I	GGTACC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	5 cut(s)	282, 417, 597, 651, 939
AsuC2I	CCSGG	2 cut(s)	382, 421
AsuHPI	GGTGA	3 cut(s)	468, 577, 914
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	5 cut(s)	282, 417, 597, 651, 939
AxyI	CCTNAGG	1 cut(s)	299
BamHI	GGATCC	1 cut(s)	664
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	609
BbvI	GCAGC	4 cut(s)	133, 136, 142, 256
BceAI	ACGGC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	2 cut(s)	382, 421
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	497
BisI	GCNGC	8 cut(s)	147, 150, 153, 156, 245, 271, 274, 885
BlsI	GCNGC	8 cut(s)	148, 151, 154, 157, 246, 272, 275, 886
Bme1390I	CCNGG	2 cut(s)	382, 421
Bme18I	GGWCC	5 cut(s)	282, 417, 597, 651, 939
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	5 cut(s)	282, 417, 597, 651, 939
BmiI	GGNNCC	7 cut(s)	295, 346, 598, 599, 666, 888, 923
BmrFI	CCNGG	2 cut(s)	382, 421
BmsI	GCATC	4 cut(s)	173, 182, 314, 625
BpiI	GAAGAC	1 cut(s)	609
BpmI	CTGGAG	2 cut(s)	642, 703
BpuEI	CTTGAG	1 cut(s)	199
BpuMI	CCSGG	2 cut(s)	382, 421
Bsa29I	ATCGAT	1 cut(s)	872
BsaHI	GRCGYC	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	285, 654, 769
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 896
Bse1I	ACTGG	2 cut(s)	284, 923
Bse21I	CCTNAGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	645
BseCI	ATCGAT	1 cut(s)	872
BseDI	CCNNGG	3 cut(s)	285, 654, 769
BseGI	GGATG	2 cut(s)	329, 803
BseLI	CCNNNNNNNGG	2 cut(s)	317, 896
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	2 cut(s)	494, 662
BseNI	ACTGG	2 cut(s)	284, 923
BseRI	GAGGAG	5 cut(s)	57, 66, 69, 72, 306
BseXI	GCAGC	4 cut(s)	133, 136, 142, 256
BseYI	CCCAGC	1 cut(s)	925
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	872
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	4 cut(s)	328, 381, 420, 890
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	2 cut(s)	317, 896
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	1 cut(s)	380
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	8 cut(s)	3, 408, 439, 509, 664, 800, 835, 943
BspACI	CCGC	7 cut(s)	144, 153, 250, 271, 274, 668, 884
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	493, 663
BspDI	ATCGAT	1 cut(s)	872
BspLI	GGNNCC	7 cut(s)	295, 346, 598, 599, 666, 888, 923
BspPI	GGATC	3 cut(s)	504, 659, 672
BspT107I	GGYRCC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	284, 923
BssECI	CCNNGG	3 cut(s)	285, 654, 769
BssMI	GATC	8 cut(s)	3, 408, 439, 509, 664, 800, 835, 943
BssNI	GRCGYC	1 cut(s)	401
BssT1I	CCWWGG	3 cut(s)	285, 654, 769
Bst4CI	ACNGT	3 cut(s)	15, 468, 552
Bst6I	CTCTTC	2 cut(s)	567, 814
BstACI	GRCGYC	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	28, 453
BstDEI	CTNAG	5 cut(s)	299, 480, 506, 671, 797
BstF5I	GGATG	2 cut(s)	329, 803
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	8 cut(s)	6, 411, 442, 512, 667, 803, 838, 946
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	8 cut(s)	3, 408, 439, 509, 664, 800, 835, 943
BstMWI	GCNNNNNNNGC	8 cut(s)	152, 155, 161, 192, 258, 267, 644, 890
BstSCI	CCNGG	2 cut(s)	380, 419
BstV1I	GCAGC	4 cut(s)	133, 136, 142, 256
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	2 cut(s)	509, 664
BstXI	CCANNNNNNTGG	1 cut(s)	468
BstYI	RGATCY	2 cut(s)	509, 664
Bsu15I	ATCGAT	1 cut(s)	872
Bsu36I	CCTNAGG	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	380
BsuTUI	ATCGAT	1 cut(s)	872
BtsCI	GGATG	2 cut(s)	329, 803
Cac8I	GCNNGC	2 cut(s)	28, 453
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	5 cut(s)	282, 417, 597, 651, 939
ClaI	ATCGAT	1 cut(s)	872
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	345, 555
CviAII	CATG	5 cut(s)	349, 583, 604, 752, 833
CviQI	GTAC	2 cut(s)	345, 555
DdeI	CTNAG	5 cut(s)	299, 480, 506, 671, 797
DpnI	GATC	8 cut(s)	5, 410, 441, 511, 666, 802, 837, 945
DpnII	GATC	8 cut(s)	3, 408, 439, 509, 664, 800, 835, 943
DraIII	CACNNNGTG	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	2 cut(s)	567, 814
EarI	CTCTTC	2 cut(s)	567, 814
Eco130I	CCWWGG	3 cut(s)	285, 654, 769
Eco24I	GRGCYC	1 cut(s)	298
Eco47I	GGWCC	5 cut(s)	282, 417, 597, 651, 939
Eco81I	CCTNAGG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	597
EcoRI	GAATTC	2 cut(s)	484, 774
EcoT14I	CCWWGG	3 cut(s)	285, 654, 769
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	3 cut(s)	285, 654, 769
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	5 cut(s)	352, 586, 607, 755, 836
FaiI	YATR	9 cut(s)	350, 492, 584, 590, 605, 753, 834, 915, 970
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	5 cut(s)	348, 582, 603, 751, 832
FauI	CCCGC	1 cut(s)	257
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	8 cut(s)	147, 150, 153, 156, 245, 271, 274, 885
FokI	GGATG	2 cut(s)	336, 790
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	8 cut(s)	147, 150, 153, 156, 245, 271, 274, 885
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	8 cut(s)	147, 150, 153, 156, 245, 271, 274, 885
GsaI	CCCAGC	1 cut(s)	929
GsuI	CTGGAG	2 cut(s)	642, 703
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	4 cut(s)	328, 381, 420, 890
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	5 cut(s)	352, 586, 607, 755, 836
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	3 cut(s)	197, 429, 614
HpaII	CCGG	4 cut(s)	328, 381, 420, 890
HphI	GGTGA	3 cut(s)	468, 577, 914
Hpy166II	GTNNAC	4 cut(s)	354, 476, 555, 933
Hpy188I	TCNGA	8 cut(s)	20, 312, 406, 428, 483, 651, 792, 943
Hpy188III	TCNNGA	5 cut(s)	412, 443, 621, 682, 779
Hpy8I	GTNNAC	4 cut(s)	354, 476, 555, 933
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	114, 126, 562
HpyCH4III	ACNGT	3 cut(s)	15, 468, 552
HpyCH4V	TGCA	5 cut(s)	158, 261, 451, 638, 968
HpyF10VI	GCNNNNNNNGC	8 cut(s)	152, 155, 161, 192, 258, 267, 644, 890
HpyF3I	CTNAG	5 cut(s)	299, 480, 506, 671, 797
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	5 cut(s)	352, 586, 607, 755, 836
HspAI	GCGC	1 cut(s)	24
KflI	GGGWCCC	1 cut(s)	597
KpnI	GGTACC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	8 cut(s)	3, 408, 439, 509, 664, 800, 835, 943
LmnI	GCTCC	4 cut(s)	293, 623, 892, 954
Lsp1109I	GCAGC	4 cut(s)	133, 136, 142, 256
LweI	GCATC	4 cut(s)	173, 182, 314, 625
MaeI	CTAG	1 cut(s)	497
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	8 cut(s)	5, 410, 441, 511, 666, 802, 837, 945
MboI	GATC	8 cut(s)	3, 408, 439, 509, 664, 800, 835, 943
MflI	RGATCY	2 cut(s)	509, 664
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	5 cut(s)	484, 559, 736, 774, 905
MlyI	GAGTC	2 cut(s)	423, 623
MmeI	TCCRAC	2 cut(s)	384, 642
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	3 cut(s)	33, 840, 976
MslI	CAYNNNNRTG	1 cut(s)	587
MspA1I	CMGCKG	4 cut(s)	146, 155, 374, 670
MspI	CCGG	4 cut(s)	328, 381, 420, 890
MspR9I	CCNGG	2 cut(s)	382, 421
MwoI	GCNNNNNNNGC	8 cut(s)	152, 155, 161, 192, 258, 267, 644, 890
NciI	CCSGG	2 cut(s)	382, 421
NdeII	GATC	8 cut(s)	3, 408, 439, 509, 664, 800, 835, 943
NlaIII	CATG	5 cut(s)	352, 586, 607, 755, 836
NlaIV	GGNNCC	7 cut(s)	295, 346, 598, 599, 666, 888, 923
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	8 cut(s)	148, 151, 154, 157, 246, 272, 275, 886
PleI	GAGTC	2 cut(s)	423, 622
PpsI	GAGTC	2 cut(s)	423, 622
PpuMI	RGGWCCY	1 cut(s)	597
PsiI	TTATAA	1 cut(s)	915
Psp5II	RGGWCCY	1 cut(s)	597
PspFI	CCCAGC	1 cut(s)	925
PspN4I	GGNNCC	7 cut(s)	295, 346, 598, 599, 666, 888, 923
PspPI	GGNCC	5 cut(s)	282, 417, 597, 651, 939
PspPPI	RGGWCCY	1 cut(s)	597
PsuI	RGATCY	2 cut(s)	509, 664
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	2 cut(s)	346, 556
RsaNI	GTAC	2 cut(s)	345, 555
RseI	CAYNNNNRTG	1 cut(s)	587
SaqAI	TTAA	3 cut(s)	33, 840, 976
SatI	GCNGC	8 cut(s)	147, 150, 153, 156, 245, 271, 274, 885
Sau3AI	GATC	8 cut(s)	3, 408, 439, 509, 664, 800, 835, 943
Sau96I	GGNCC	5 cut(s)	282, 417, 597, 651, 939
SchI	GAGTC	2 cut(s)	423, 623
ScrFI	CCNGG	2 cut(s)	382, 421
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	4 cut(s)	173, 182, 314, 625
SinI	GGWCC	5 cut(s)	282, 417, 597, 651, 939
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	5 cut(s)	484, 559, 736, 774, 905
SsiI	CCGC	7 cut(s)	144, 153, 250, 271, 274, 668, 884
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	2 cut(s)	380, 419
StyI	CCWWGG	3 cut(s)	285, 654, 769
TaaI	ACNGT	3 cut(s)	15, 468, 552
TaqI	TCGA	1 cut(s)	872
TasI	AATT	5 cut(s)	484, 559, 736, 774, 905
TatI	WGTACW	1 cut(s)	554
TauI	GCSGC	4 cut(s)	155, 273, 276, 887
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	3 cut(s)	33, 840, 976
Tru9I	TTAA	3 cut(s)	33, 840, 976
TseI	GCWGC	4 cut(s)	146, 149, 155, 244
TspDTI	ATGAA	3 cut(s)	599, 801, 846
VpaK11BI	GGWCC	5 cut(s)	282, 417, 597, 651, 939
XapI	RAATTY	2 cut(s)	484, 774
XcmI	CCANNNNNNNNNTGG	2 cut(s)	728, 933
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.