Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0015517

Physical Location & Seq

Genomic Coordinates Forward (+)

9550717 .. 9551166

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAATAATATGATTGGGTCCCACATGATGACTACGGAGCCAGCTGCAATGAGTACAGCTCGAACCCTGGGGTTGGATCCAGTATGCCAGGCTCCTTCACTTGGTCTGTGCAGCTCTTTCTGGAGAAACAATAACAACCAAAATCAGCCACCTCCAAGCCATCACCAACAAAACGGTTTCATTGTTGGTCATGAAGTTCAAAGCAGCAATATTGGAATACAAGAATTGTTTCAGAGGCTAAGATCAACAACATCACAATCAGGTAGTTACTATTCCGACCATCTAAATAATGTGGTGATGTCTTCATCCTCCTCATCATTGTCTTCATCTTCCACCTCATCGATTTTGGATTCGGCTCCGGTGGTTGGCGGTGGCGAAATGAGTTACTGGAACCCGGCGTTTACCGCGTGGTCGTCAGATCTTCCAACAACCAATGGTGCATATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010118 GO:0010374 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0140110 GO:1901363 GO:1902066 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

150

Amino Acids

16.0

Weight (kDa)

5.75

Isoelectric Point (pI)

67.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14970
malus_domestica	MD02G1163500.v1.1 MD15G1276300.v1.1
prunus_persica	Prupe.7G140700_v2.0.a1
pyrus_communis	pycom02g12950 pycom15g23940
rosa_chinensis	RchiOBHm_Chr2g0104031
rosa_laevigata	RLG00000017279
rosa_multiflora	Rmu_sc0001720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00139190
rosa_rugosa	Rorug02G0118700
rosa_samantha	Rh2AG168000 Rh2BG175000 Rh2CG173800 Rh2DG173500
rosa_wichuraiana	Rw2G013140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	407
AciI	CCGC	2 cut(s)	369, 405
AclWI	GGATC	2 cut(s)	71, 84
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	3 cut(s)	73, 101, 365
AgsI	TTSAA	1 cut(s)	200
AjnI	CCWGG	2 cut(s)	66, 87
AluBI	AGCT	3 cut(s)	44, 59, 114
AluI	AGCT	3 cut(s)	44, 59, 114
AlwI	GGATC	2 cut(s)	71, 84
ApeKI	GCWGC	3 cut(s)	44, 111, 204
Asp700I	GAANNNNTTC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	155, 307
AvaII	GGWCC	1 cut(s)	18
BamHI	GGATCC	1 cut(s)	76
BbsI	GAAGAC	2 cut(s)	294, 315
BbvI	GCAGC	3 cut(s)	31, 123, 216
BccI	CCATC	2 cut(s)	168, 288
BciT130I	CCWGG	2 cut(s)	68, 89
BcnI	CCSGG	1 cut(s)	395
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	3 cut(s)	45, 112, 205
BlsI	GCNGC	3 cut(s)	46, 113, 206
Bme1390I	CCNGG	3 cut(s)	68, 89, 395
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	7 cut(s)	19, 20, 39, 78, 93, 357, 392
BmrFI	CCNGG	3 cut(s)	68, 89, 395
BpiI	GAAGAC	2 cut(s)	294, 315
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
BpmI	CTGGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	341
BsaJI	CCNNGG	2 cut(s)	66, 67
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 101, 365
Bse1I	ACTGG	2 cut(s)	80, 392
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	68, 89
BseCI	ATCGAT	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	66, 67
BseGI	GGATG	1 cut(s)	305
BseLI	CCNNNNNNNGG	3 cut(s)	73, 101, 365
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	80, 392
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	31, 123, 216
BsgI	GTGCAG	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	407
BshVI	ATCGAT	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	359, 395
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	3 cut(s)	73, 101, 365
BsmFI	GGGAC	1 cut(s)	4
Bsp143I	GATC	3 cut(s)	76, 242, 418
BspACI	CCGC	2 cut(s)	369, 405
BspDI	ATCGAT	1 cut(s)	341
BspFNI	CGCG	1 cut(s)	407
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	7 cut(s)	19, 20, 39, 78, 93, 357, 392
BspPI	GGATC	2 cut(s)	71, 84
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	80, 392
BssECI	CCNNGG	2 cut(s)	66, 67
BssMI	GATC	3 cut(s)	76, 242, 418
Bst2UI	CCWGG	2 cut(s)	68, 89
Bst4CI	ACNGT	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	305
BstFNI	CGCG	1 cut(s)	407
BstKTI	GATC	3 cut(s)	79, 245, 421
BstMBI	GATC	3 cut(s)	76, 242, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	2 cut(s)	68, 89
BstSCI	CCNGG	3 cut(s)	66, 87, 393
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	3 cut(s)	31, 123, 216
BstV2I	GAAGAC	2 cut(s)	294, 315
BstX2I	RGATCY	2 cut(s)	76, 418
BstYI	RGATCY	2 cut(s)	76, 418
Bsu15I	ATCGAT	1 cut(s)	341
BsuTUI	ATCGAT	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	2 cut(s)	25, 191
CviJI	RGCY	9 cut(s)	40, 44, 59, 92, 114, 148, 159, 238, 356
CviKI_1	RGCY	9 cut(s)	40, 44, 59, 92, 114, 148, 159, 238, 356
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	3 cut(s)	78, 244, 420
DpnII	GATC	3 cut(s)	76, 242, 418
Eco47I	GGWCC	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	66, 87
FaeI	CATG	2 cut(s)	28, 194
FaiI	YATR	5 cut(s)	11, 26, 85, 192, 442
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	2 cut(s)	24, 190
Fnu4HI	GCNGC	3 cut(s)	45, 112, 205
FokI	GGATG	1 cut(s)	292
Fsp4HI	GCNGC	3 cut(s)	45, 112, 205
GluI	GCNGC	3 cut(s)	45, 112, 205
GsuI	CTGGAG	1 cut(s)	142
HapII	CCGG	2 cut(s)	359, 395
Hin1II	CATG	2 cut(s)	28, 194
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	2 cut(s)	359, 395
HphI	GGTGA	2 cut(s)	155, 307
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	3 cut(s)	234, 277, 418
Hpy188III	TCNNGA	2 cut(s)	121, 191
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	47, 111, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	28, 194
KflI	GGGWCCC	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	76, 242, 418
LmnI	GCTCC	3 cut(s)	37, 97, 361
Lsp1109I	GCAGC	3 cut(s)	31, 123, 216
MaeIII	GTNAC	2 cut(s)	266, 383
MalI	GATC	3 cut(s)	78, 244, 420
MboI	GATC	3 cut(s)	76, 242, 418
MboII	GAAGA	4 cut(s)	294, 315, 321, 413
MflI	RGATCY	2 cut(s)	76, 418
MluCI	AATT	1 cut(s)	224
MmeI	TCCRAC	3 cut(s)	54, 300, 449
MnlI	CCTC	5 cut(s)	162, 228, 319, 322, 346
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	2 cut(s)	359, 395
MspR9I	CCNGG	3 cut(s)	68, 89, 395
MvaI	CCWGG	2 cut(s)	68, 89
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	404
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	3 cut(s)	76, 242, 418
NlaIII	CATG	2 cut(s)	28, 194
NlaIV	GGNNCC	7 cut(s)	19, 20, 39, 78, 93, 357, 392
PagI	TCATGA	1 cut(s)	190
PasI	CCCWGGG	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	46, 113, 206
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	66, 87
PspGI	CCWGG	2 cut(s)	66, 87
PspN4I	GGNNCC	7 cut(s)	19, 20, 39, 78, 93, 357, 392
PspPI	GGNCC	1 cut(s)	18
PspPPI	RGGWCCY	1 cut(s)	18
PsuI	RGATCY	2 cut(s)	76, 418
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	3 cut(s)	45, 112, 205
Sau3AI	GATC	3 cut(s)	76, 242, 418
Sau96I	GGNCC	1 cut(s)	18
ScrFI	CCNGG	3 cut(s)	68, 89, 395
SetI	ASST	6 cut(s)	46, 61, 116, 154, 265, 338
SinI	GGWCC	1 cut(s)	18
Sse9I	AATT	1 cut(s)	224
SsiI	CCGC	2 cut(s)	369, 405
SspI	AATATT	1 cut(s)	211
StyD4I	CCNGG	3 cut(s)	66, 87, 393
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	61, 341
TasI	AATT	1 cut(s)	224
TatI	WGTACW	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TseI	GCWGC	3 cut(s)	44, 111, 204
TspDTI	ATGAA	5 cut(s)	17, 169, 207, 294, 315
TspGWI	ACGGA	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.