Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016733

Physical Location & Seq

Genomic Coordinates Reverse (-)

8948533 .. 8948988

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAAGCTAAATGTGCTGTTGTTTTTGCCCTAATTGCATGCCTTGACATTGCGTCAGTTGAGGGTATAAGGCCCTTTTGGTCAGAAACCAAATCCACAGAGACGATCCTCATCGATTCCATTGAAGCTAACTATAAAAGAGAACTGGGAGAGCAAAGCGGCCAACACAACAACTTGAAGGGAGAATTCAAAAGTGCAGTGGTGAAGAATCAAGGACACTTCGCTAAGTTGGGAGCTCCAGCATATAATGACGAAGAAGATTTTCGACCTACAACACCAGGTAACAGCCCCGGCGCCGGTCATAAGTCATTACAAGTCAGTGAACCAAAGACAGTAGTAGTGGCTGGTCGGAACTACTTTACTGCAGGAACGAAAGAAGACTACCGGCCAACCCAACCTGGTCACAGCCCTGGTGTTGGCCATGCTCTTCAAGAAAATGTCAAACCAATGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009966 GO:0009987 GO:0009991 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0022603 GO:0023051 GO:0030545 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0048018 GO:0048046 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0065007 GO:0065009 GO:0071496 GO:0071705 GO:0098772 GO:1900618 GO:1901371 GO:1902025 GO:1905421 GO:2000024 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.34

Weight (kDa)

6.2

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15750
malus_domestica	MD02G1169400.v1.1 MD15G1281900.v1.1
prunus_persica	Prupe.7G135900_v2.0.a1
rosa_laevigata	RLG00000017394
rosa_multiflora	Rmu_sc0000641.1_g000001 Rmu_sc0011101.1_g000013
rosa_roxburghii	Rroxscaffold_2G00138540
rosa_rugosa	Rorug02G0125600
rosa_samantha	Rh2AG176200 Rh2BG184100 Rh2CG180500 Rh2DG182200
rosa_wichuraiana	Rw2G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	3 cut(s)	160, 386, 418
AcsI	RAATTY	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	296, 416
AgsI	TTSAA	4 cut(s)	125, 178, 190, 431
AhdI	GACNNNNNGTC	1 cut(s)	52
AjnI	CCWGG	3 cut(s)	277, 397, 409
AluBI	AGCT	3 cut(s)	8, 128, 236
AluI	AGCT	3 cut(s)	8, 128, 236
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	100
AoxI	GGCC	4 cut(s)	71, 160, 386, 418
ApoI	RAATTY	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	238
BciT130I	CCWGG	3 cut(s)	279, 399, 411
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	363
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme1390I	CCNGG	4 cut(s)	279, 291, 399, 411
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	4 cut(s)	279, 291, 399, 411
BmrI	ACTGGG	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	289, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 416
Bse118I	RCCGGY	2 cut(s)	296, 384
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	110
BseBI	CCWGG	3 cut(s)	279, 399, 411
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	289, 409
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	296, 416
BseMI	GCAATG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	4 cut(s)	73, 162, 388, 420
BshNI	GGYRCC	1 cut(s)	293
BshVI	ATCGAT	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	3 cut(s)	291, 297, 385
BslI	CCNNNNNNNGG	2 cut(s)	296, 416
BsmAI	GTCTC	1 cut(s)	95
BsmBI	CGTCTC	1 cut(s)	95
BsnI	GGCC	4 cut(s)	73, 162, 388, 420
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	4 cut(s)	73, 162, 388, 420
BspDI	ATCGAT	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	1 cut(s)	100
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	2 cut(s)	296, 384
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	2 cut(s)	296, 384
BssECI	CCNNGG	2 cut(s)	289, 409
BssMI	GATC	1 cut(s)	105
BssNI	GRCGYC	1 cut(s)	294
Bst2UI	CCWGG	3 cut(s)	279, 399, 411
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	1 cut(s)	108
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 35
BstNI	CCWGG	3 cut(s)	279, 399, 411
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	4 cut(s)	277, 289, 397, 409
BstSFI	CTRYAG	1 cut(s)	363
BstV2I	GAAGAC	1 cut(s)	384
Bsu15I	ATCGAT	1 cut(s)	114
BsuRI	GGCC	4 cut(s)	73, 162, 388, 420
BsuTUI	ATCGAT	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 325
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	2 cut(s)	296, 384
Cfr13I	GGNCC	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	42
CsiI	ACCWGGT	2 cut(s)	277, 397
CviAII	CATG	2 cut(s)	39, 422
DdeI	CTNAG	1 cut(s)	225
DinI	GGCGCC	1 cut(s)	295
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
DriI	GACNNNNNGTC	1 cut(s)	52
EaeI	YGGCCR	3 cut(s)	160, 386, 418
Eam1104I	CTCTTC	1 cut(s)	432
Eam1105I	GACNNNNNGTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	3 cut(s)	277, 397, 409
EcoT38I	GRGCYC	1 cut(s)	238
EgeI	GGCGCC	1 cut(s)	295
EheI	GGCGCC	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	2 cut(s)	42, 425
FaiI	YATR	8 cut(s)	40, 68, 135, 244, 246, 303, 423, 454
FatI	CATG	2 cut(s)	38, 421
Fnu4HI	GCNGC	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	160
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	4 cut(s)	73, 162, 388, 420
HapII	CCGG	3 cut(s)	291, 297, 385
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	42, 425
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	116, 208
HpaII	CCGG	3 cut(s)	291, 297, 385
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	85, 351
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	3 cut(s)	38, 197, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 35
HpyF3I	CTNAG	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	42, 425
HspAI	GCGC	1 cut(s)	294
KasI	GGCGCC	1 cut(s)	293
Kzo9I	GATC	1 cut(s)	105
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	2 cut(s)	233, 241
MabI	ACCWGGT	2 cut(s)	277, 397
MaeIII	GTNAC	2 cut(s)	281, 401
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	5 cut(s)	217, 266, 269, 389, 419
MhlI	GDGCHC	1 cut(s)	238
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	2 cut(s)	33, 185
MluNI	TGGCCA	1 cut(s)	420
Mly113I	GGCGCC	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	2 cut(s)	55, 119
Mox20I	TGGCCA	1 cut(s)	420
MroXI	GAANNNNTTC	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	420
MspI	CCGG	3 cut(s)	291, 297, 385
MspR9I	CCNGG	4 cut(s)	279, 291, 399, 411
MvaI	CCWGG	3 cut(s)	279, 399, 411
MwoI	GCNNNNNNNGC	2 cut(s)	14, 35
NarI	GGCGCC	1 cut(s)	294
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	2 cut(s)	42, 425
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	401
NspI	RCATGY	1 cut(s)	42
PaeI	GCATGC	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	116, 208
PkrI	GCNGC	1 cut(s)	161
PluTI	GGCGCC	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	277, 397, 409
PspGI	CCWGG	3 cut(s)	277, 397, 409
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	367
SacI	GAGCTC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	432
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	72
ScrFI	CCNGG	4 cut(s)	279, 291, 399, 411
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	6 cut(s)	10, 130, 238, 271, 283, 400
SexAI	ACCWGGT	2 cut(s)	277, 397
SfcI	CTRYAG	1 cut(s)	363
SfoI	GGCGCC	1 cut(s)	295
SphI	GCATGC	1 cut(s)	42
Sse9I	AATT	2 cut(s)	33, 185
SsiI	CCGC	1 cut(s)	159
SspDI	GGCGCC	1 cut(s)	293
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	4 cut(s)	277, 289, 397, 409
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	114, 265
TasI	AATT	2 cut(s)	33, 185
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	116, 208
TscAI	CASTG	2 cut(s)	204, 325
TseFI	GTSAC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	401
TspRI	CASTG	2 cut(s)	204, 325
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.