Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016733

Physical Location & Seq

Genomic Coordinates Forward (+)

10822324 .. 10824647

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0125600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAAACCCCATCTTCAACACGAAGAGTCACAAGGTCGCAGACTTTGGTCCCCCAGAGCAACAACACCATACCAATTTCAAGGAAGAGTAATGAAGATTCTGAAATGGGTGTATCGAAATCAAGAACAAGAAATGGAAAACAGCAACAACAACAGCAAGACCGGTCTGCTCTGATCGACATAACCAACGATTCTCCGATTGTGGGAGTTGCGATGCAGACGCCGTCATCGGCGATTATGAAACTGAGGAGCATCCGAGCCAAGACCACACCGGGTTCCGGCGAGGCTTTGTTGAGAGGTCAAGTCAAGACCCTGTTGCAACAAGTGGAGGAAGAGGCCGAGCTCTCTAAGCTCTCTTTCGAAAACCGGCCTTTTCGTCATCTTCAAGGACTTATTGGGAACTCGCCGACCGGACTTCTTGCCCCAACTCCGGCGAACACCCCGCAGGTGAATGATCTCTCGGTTGATGGAAGTGGGAGTAACGTTGAGAGACCCTCTCCTCTAGTCCAAGAACAACTGATCTCTCAGGTGGTATGTGACATCTTTGAAGGAAAGAATCAAGCGAGCCTTGAATCACAAAAGAGTATCCTGAGTCGATCTCTGCTGCTTGATTTCTCGGAGAAGTCTGAAATCTCTTTCTCAGAAGAAGAAGATTGCTCTTCTGTGATTACTAGTGAAAGCAAAGAAAGGTCATCCACAGATGATGATAGTGCTTCAGTGTGGTCCATTCAGGTCAATGCGAGCACCTGTGATGAAGAAGAGGATGAAGGAGAAGACTATTATCTGAAGGGAGTTGATGAAATCGACGAAGAGGAAGAGAATGAAGAGGATGCAGGATATGATGTTGATGAGCTCTGTGAAGGTATAAGCAAGATTTTTGTGGGTGAGAAGAGAATGATTCCCAAGTTTGAAGGAAAGCACACAAAATTTGTGTACAACAGTGATGATGAAATTGCTGAAGAAGTTGTGGAAGACTCTACTCCACGTACTCCAGATTCAGCTGATGTTCTGTCACCAAGTGCCTTGTGCTTGAAGGGATTGCCTACACCAAGAGGAAAGCACCTGCGATTCCTGGACGAAAACGACTCTGCTTATAGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009966 GO:0009987 GO:0009991 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0022603 GO:0023051 GO:0030545 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0048018 GO:0048046 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0065007 GO:0065009 GO:0071496 GO:0071705 GO:0098772 GO:1900618 GO:1901371 GO:1902025 GO:1905421 GO:2000024 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

40.42

Weight (kDa)

4.48

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15750
malus_domestica	MD02G1169400.v1.1 MD15G1281900.v1.1
prunus_persica	Prupe.7G135900_v2.0.a1
rosa_laevigata	RLG00000017394
rosa_multiflora	Rmu_sc0000641.1_g000001 Rmu_sc0011101.1_g000013
rosa_roxburghii	Rroxscaffold_2G00138540
rosa_rugosa	Rorug02G0125600
rosa_samantha	Rh2AG176200 Rh2BG184100 Rh2CG180500 Rh2DG182200
rosa_wichuraiana	Rw2G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	436, 1071
Acc36I	ACCTGC	2 cut(s)	436, 1071
AciI	CCGC	1 cut(s)	443
AclI	AACGTT	1 cut(s)	483
AcsI	RAATTY	1 cut(s)	926
AcuI	CTGAAG	3 cut(s)	699, 806, 978
AcyI	GRCGYC	1 cut(s)	221
AdeI	CACNNNGTG	1 cut(s)	1019
AfaI	GTAC	2 cut(s)	935, 988
AfiI	CCNNNNNNNGG	3 cut(s)	203, 278, 430
AgeI	ACCGGT	1 cut(s)	162
AgsI	TTSAA	7 cut(s)	18, 81, 386, 548, 572, 911, 1033
AhlI	ACTAGT	1 cut(s)	671
AjnI	CCWGG	1 cut(s)	1071
AluBI	AGCT	4 cut(s)	343, 352, 853, 1001
AluI	AGCT	4 cut(s)	343, 352, 853, 1001
Alw21I	GWGCWC	3 cut(s)	345, 746, 855
Alw26I	GTCTC	1 cut(s)	484
AoxI	GGCC	2 cut(s)	336, 368
ApeKI	GCWGC	1 cut(s)	604
ApoI	RAATTY	1 cut(s)	926
AsiGI	ACCGGT	1 cut(s)	162
AspS9I	GGNCC	2 cut(s)	49, 723
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	3 cut(s)	460, 896, 1005
AsuII	TTCGAA	1 cut(s)	360
AvaII	GGWCC	2 cut(s)	49, 723
BanII	GRGCYC	2 cut(s)	345, 855
BbsI	GAAGAC	2 cut(s)	780, 978
Bbv12I	GWGCWC	3 cut(s)	345, 746, 855
BbvI	GCAGC	1 cut(s)	591
BccI	CCATC	2 cut(s)	19, 461
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	1073
BciVI	GTATCC	1 cut(s)	596
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	484
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	2 cut(s)	503, 672
BfuAI	ACCTGC	2 cut(s)	436, 1071
BfuI	GTATCC	1 cut(s)	596
BisI	GCNGC	1 cut(s)	605
BlsI	GCNGC	1 cut(s)	606
Bme1390I	CCNGG	2 cut(s)	273, 1073
Bme18I	GGWCC	2 cut(s)	49, 723
BmgT120I	GGNCC	2 cut(s)	49, 723
BmiI	GGNNCC	2 cut(s)	51, 277
BmrFI	CCNGG	2 cut(s)	273, 1073
BmsI	GCATC	3 cut(s)	204, 261, 820
BoxI	GACNNNNGTC	1 cut(s)	47
BpiI	GAAGAC	2 cut(s)	780, 978
BplI	GAGNNNNNCTC	6 cut(s)	479, 511, 481, 513, 583, 615
BpmI	CTGGAG	1 cut(s)	975
Bpu14I	TTCGAA	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	986
BsaHI	GRCGYC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	484
BsaWI	WCCGGW	2 cut(s)	162, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 278, 430
Bse118I	RCCGGY	2 cut(s)	162, 366
BseBI	CCWGG	1 cut(s)	1073
BseGI	GGATG	4 cut(s)	252, 692, 769, 835
BseLI	CCNNNNNNNGG	3 cut(s)	203, 278, 430
BseMII	CTCAG	4 cut(s)	236, 539, 581, 654
BseRI	GAGGAG	2 cut(s)	262, 489
BseXI	GCAGC	1 cut(s)	591
Bsh1285I	CGRYCG	1 cut(s)	411
BshFI	GGCC	2 cut(s)	338, 370
BshTI	ACCGGT	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	411
BsiHKAI	GWGCWC	3 cut(s)	345, 746, 855
BsiSI	CCGG	6 cut(s)	163, 272, 279, 367, 411, 431
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	203, 278, 430
BsmAI	GTCTC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	338, 370
Bso31I	GGTCTC	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	360
Bsp1286I	GDGCHC	3 cut(s)	345, 746, 855
Bsp1407I	TGTACA	1 cut(s)	933
Bsp143I	GATC	4 cut(s)	174, 454, 519, 596
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	2 cut(s)	338, 370
BspCNI	CTCAG	4 cut(s)	237, 538, 582, 653
BspLI	GGNNCC	2 cut(s)	51, 277
BspMI	ACCTGC	2 cut(s)	436, 1071
BspQI	GCTCTTC	1 cut(s)	664
BspT104I	TTCGAA	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	484
BsrFI	RCCGGY	2 cut(s)	162, 366
BsrGI	TGTACA	1 cut(s)	933
BssAI	RCCGGY	2 cut(s)	162, 366
BssMI	GATC	4 cut(s)	174, 454, 519, 596
BssNI	GRCGYC	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	1073
Bst4CI	ACNGT	1 cut(s)	941
Bst6I	CTCTTC	9 cut(s)	19, 80, 327, 664, 753, 804, 810, 819, 884
BstACI	GRCGYC	1 cut(s)	221
BstAUI	TGTACA	1 cut(s)	933
BstBAI	YACGTR	1 cut(s)	986
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	565, 742
BstDEI	CTNAG	5 cut(s)	245, 348, 525, 590, 640
BstF5I	GGATG	4 cut(s)	252, 692, 769, 835
BstKTI	GATC	4 cut(s)	177, 457, 522, 599
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	4 cut(s)	174, 454, 519, 596
BstMCI	CGRYCG	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstNI	CCWGG	1 cut(s)	1073
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	271, 1071
BstV1I	GCAGC	1 cut(s)	591
BstV2I	GAAGAC	2 cut(s)	780, 978
BsuI	GTATCC	1 cut(s)	596
BsuRI	GGCC	2 cut(s)	338, 370
BtgZI	GCGATG	1 cut(s)	227
BtsCI	GGATG	4 cut(s)	252, 692, 769, 835
BtsIMutI	CAGTG	2 cut(s)	723, 946
BveI	ACCTGC	2 cut(s)	436, 1071
Cac8I	GCNNGC	2 cut(s)	565, 742
Cfr10I	RCCGGY	2 cut(s)	162, 366
Cfr13I	GGNCC	2 cut(s)	49, 723
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	934, 987
CspAI	ACCGGT	1 cut(s)	162
CviJI	RGCY	9 cut(s)	260, 287, 338, 343, 352, 370, 567, 853, 1001
CviKI_1	RGCY	9 cut(s)	260, 287, 338, 343, 352, 370, 567, 853, 1001
CviQI	GTAC	2 cut(s)	934, 987
DdeI	CTNAG	5 cut(s)	245, 348, 525, 590, 640
DpnI	GATC	4 cut(s)	176, 456, 521, 598
DpnII	GATC	4 cut(s)	174, 454, 519, 596
DraIII	CACNNNGTG	1 cut(s)	1019
Eam1104I	CTCTTC	9 cut(s)	19, 80, 327, 664, 753, 804, 810, 819, 884
EarI	CTCTTC	9 cut(s)	19, 80, 327, 664, 753, 804, 810, 819, 884
Ecl136II	GAGCTC	2 cut(s)	343, 853
Eco24I	GRGCYC	2 cut(s)	345, 855
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	49, 723
Eco53kI	GAGCTC	2 cut(s)	343, 853
Eco57I	CTGAAG	3 cut(s)	699, 806, 978
EcoICRI	GAGCTC	2 cut(s)	343, 853
EcoRII	CCWGG	1 cut(s)	1071
EcoT38I	GRGCYC	2 cut(s)	345, 855
FaiI	YATR	7 cut(s)	71, 182, 239, 535, 840, 866, 1095
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	1 cut(s)	35
FauI	CCCGC	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	605
FokI	GGATG	4 cut(s)	239, 679, 776, 842
FriOI	GRGCYC	2 cut(s)	345, 855
Fsp4HI	GCNGC	1 cut(s)	605
FspBI	CTAG	2 cut(s)	503, 672
GluI	GCNGC	1 cut(s)	605
GsuI	CTGGAG	1 cut(s)	975
HaeIII	GGCC	2 cut(s)	338, 370
HapII	CCGG	6 cut(s)	163, 272, 279, 367, 411, 431
HgaI	GACGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	221
HpaII	CCGG	6 cut(s)	163, 272, 279, 367, 411, 431
HphI	GGTGA	3 cut(s)	460, 896, 1005
Hpy166II	GTNNAC	1 cut(s)	934
Hpy188I	TCNGA	8 cut(s)	103, 174, 198, 257, 619, 628, 643, 786
Hpy188III	TCNNGA	4 cut(s)	123, 307, 589, 992
Hpy8I	GTNNAC	1 cut(s)	934
Hpy99I	CGWCG	1 cut(s)	809
HpyAV	CCTTC	6 cut(s)	542, 761, 781, 854, 905, 1027
HpyCH4III	ACNGT	1 cut(s)	941
HpyCH4IV	ACGT	2 cut(s)	483, 985
HpyCH4V	TGCA	3 cut(s)	217, 319, 833
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	5 cut(s)	245, 348, 525, 590, 640
HpySE526I	ACGT	2 cut(s)	483, 985
Hsp92I	GRCGYC	1 cut(s)	221
Kzo9I	GATC	4 cut(s)	174, 454, 519, 596
LguI	GCTCTTC	1 cut(s)	664
LmnI	GCTCC	1 cut(s)	249
Lsp1109I	GCAGC	1 cut(s)	591
LweI	GCATC	3 cut(s)	204, 261, 820
MaeI	CTAG	2 cut(s)	503, 672
MaeII	ACGT	2 cut(s)	483, 985
MaeIII	GTNAC	4 cut(s)	28, 479, 536, 1011
MalI	GATC	4 cut(s)	176, 456, 521, 598
MboI	GATC	4 cut(s)	174, 454, 519, 596
MhlI	GDGCHC	3 cut(s)	345, 746, 855
MluCI	AATT	3 cut(s)	75, 926, 951
MlyI	GAGTC	4 cut(s)	36, 601, 968, 1079
MspA1I	CMGCKG	1 cut(s)	1001
MspI	CCGG	6 cut(s)	163, 272, 279, 367, 411, 431
MspR9I	CCNGG	2 cut(s)	273, 1073
MvaI	CCWGG	1 cut(s)	1073
MwoI	GCNNNNNNNGC	1 cut(s)	349
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	4 cut(s)	174, 454, 519, 596
NlaIV	GGNNCC	2 cut(s)	51, 277
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	3 cut(s)	28, 536, 1011
NspV	TTCGAA	1 cut(s)	360
PaqCI	CACCTGC	2 cut(s)	436, 1071
PciSI	GCTCTTC	1 cut(s)	664
PfeI	GAWTC	7 cut(s)	98, 191, 556, 572, 898, 995, 1068
PflFI	GACNNNGTC	1 cut(s)	223
PfoI	TCCNGGA	1 cut(s)	1071
PinAI	ACCGGT	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	606
PleI	GAGTC	4 cut(s)	35, 600, 968, 1079
PpsI	GAGTC	4 cut(s)	35, 600, 968, 1079
Ppu21I	YACGTR	1 cut(s)	986
PshAI	GACNNNNGTC	1 cut(s)	47
Psp124BI	GAGCTC	2 cut(s)	345, 855
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	1071
PspGI	CCWGG	1 cut(s)	1071
PspN4I	GGNNCC	2 cut(s)	51, 277
PspPI	GGNCC	2 cut(s)	49, 723
PsyI	GACNNNGTC	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	1001
RsaI	GTAC	2 cut(s)	935, 988
RsaNI	GTAC	2 cut(s)	934, 987
SacI	GAGCTC	2 cut(s)	345, 855
SapI	GCTCTTC	1 cut(s)	664
SatI	GCNGC	1 cut(s)	605
Sau3AI	GATC	4 cut(s)	174, 454, 519, 596
Sau96I	GGNCC	2 cut(s)	49, 723
SchI	GAGTC	4 cut(s)	36, 601, 968, 1079
ScrFI	CCNGG	2 cut(s)	273, 1073
SduI	GDGCHC	3 cut(s)	345, 746, 855
SfaNI	GCATC	3 cut(s)	204, 261, 820
SfuI	TTCGAA	1 cut(s)	360
SinI	GGWCC	2 cut(s)	49, 723
SpeI	ACTAGT	1 cut(s)	671
Sse9I	AATT	3 cut(s)	75, 926, 951
SsiI	CCGC	1 cut(s)	443
SspMI	CTAG	2 cut(s)	503, 672
SstI	GAGCTC	2 cut(s)	345, 855
StyD4I	CCNGG	2 cut(s)	271, 1071
TaaI	ACNGT	1 cut(s)	941
TaiI	ACGT	2 cut(s)	486, 988
TaqI	TCGA	5 cut(s)	116, 177, 360, 595, 804
TasI	AATT	3 cut(s)	75, 926, 951
TatI	WGTACW	1 cut(s)	933
TfiI	GAWTC	7 cut(s)	98, 191, 556, 572, 898, 995, 1068
TscAI	CASTG	2 cut(s)	723, 946
TseFI	GTSAC	3 cut(s)	28, 536, 1011
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	3 cut(s)	28, 536, 1011
TspDTI	ATGAA	7 cut(s)	108, 254, 768, 780, 813, 837, 963
TspRI	CASTG	2 cut(s)	723, 946
Tth111I	GACNNNGTC	1 cut(s)	223
VpaK11BI	GGWCC	2 cut(s)	49, 723
XapI	RAATTY	1 cut(s)	926
XspI	CTAG	2 cut(s)	503, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.