Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0016733

Physical Location & Seq

Genomic Coordinates Reverse (-)

14601277 .. 14601890

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1169400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAAACTAAATGTGCTATTCTTCTAGCCCTAATTTCATGCATTGGAATTGTGTGCATTGAGGGAAGGCCACTTTTTCCAAAGAATAAAGATTCGATCAACACAATCGAAGCCAACCATAAAAGAGAATTGGGAGAGCAAGTCAGCCAACCCGCACCCCCTCACCACATTGCTAGTCCCACGACACCTCACAGTACTGCTCATAATTTTGGTGATATTTCAGGTACTCATGCAGCATATAAAGATGATTTTAGACCTACAACACCAGGTAGCAGCCCTGGGGTTGGTCATGCATTCACAAATAGTGGAGAATACATGGAATCAGAGGCTGAGCATGATGTTACTGCAGGAAAGCCCACAGCACCAGGGCACAGCCCTGGGGTTGGTCATGCATTCACAAATAGTGGAGAATACATGGAATCAGAGGCTGAGCATGATGTTACTGCAGGAAAGCCCACAGCACCAGGGCACAGCCCTGGGGTTGGCCATGTTCTTCAAGTACAAAATGCCGAACCAATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009966 GO:0009987 GO:0009991 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0022603 GO:0023051 GO:0030545 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0048018 GO:0048046 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0065007 GO:0065009 GO:0071496 GO:0071705 GO:0098772 GO:1900618 GO:1901371 GO:1902025 GO:1905421 GO:2000024 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

18.22

Weight (kDa)

5.63

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15750
malus_domestica	MD02G1169400.v1.1 MD15G1281900.v1.1
prunus_persica	Prupe.7G135900_v2.0.a1
rosa_laevigata	RLG00000017394
rosa_multiflora	Rmu_sc0000641.1_g000001 Rmu_sc0011101.1_g000013
rosa_roxburghii	Rroxscaffold_2G00138540
rosa_rugosa	Rorug02G0125600
rosa_samantha	Rh2AG176200 Rh2BG184100 Rh2CG180500 Rh2DG182200
rosa_wichuraiana	Rw2G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	484
AfaI	GTAC	3 cut(s)	196, 226, 501
AfiI	CCNNNNNNNGG	3 cut(s)	284, 383, 482
AgsI	TTSAA	1 cut(s)	497
AjnI	CCWGG	6 cut(s)	265, 277, 364, 376, 463, 475
AlwNI	CAGNNNCTG	2 cut(s)	329, 428
AoxI	GGCC	2 cut(s)	68, 484
ApeKI	GCWGC	2 cut(s)	233, 273
Asp700I	GAANNNNTTC	1 cut(s)	516
AsuHPI	GGTGA	2 cut(s)	155, 224
BaeGI	GKGCMC	2 cut(s)	372, 471
BalI	TGGCCA	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	245, 285
BciT130I	CCWGG	6 cut(s)	267, 279, 366, 378, 465, 477
BfaI	CTAG	2 cut(s)	26, 174
BfmI	CTRYAG	2 cut(s)	345, 444
BisI	GCNGC	2 cut(s)	234, 274
BlpI	GCTNAGC	2 cut(s)	330, 429
BlsI	GCNGC	2 cut(s)	235, 275
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	6 cut(s)	267, 279, 366, 378, 465, 477
BmrFI	CCNGG	6 cut(s)	267, 279, 366, 378, 465, 477
Bpu1102I	GCTNAGC	2 cut(s)	330, 429
BsaJI	CCNNGG	8 cut(s)	277, 278, 365, 376, 377, 464, 475, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 383, 482
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	6 cut(s)	267, 279, 366, 378, 465, 477
BseDI	CCNNGG	8 cut(s)	277, 278, 365, 376, 377, 464, 475, 476
BseLI	CCNNNNNNNGG	3 cut(s)	284, 383, 482
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	321, 420
BseSI	GKGCMC	2 cut(s)	372, 471
BseXI	GCAGC	2 cut(s)	245, 285
BshFI	GGCC	2 cut(s)	70, 486
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	3 cut(s)	284, 383, 482
BsmFI	GGGAC	1 cut(s)	162
BsmI	GAATGC	2 cut(s)	293, 392
BsnI	GGCC	2 cut(s)	70, 486
Bsp1286I	GDGCHC	2 cut(s)	372, 471
Bsp143I	GATC	1 cut(s)	96
Bsp1720I	GCTNAGC	2 cut(s)	330, 429
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	70, 486
BspCNI	CTCAG	2 cut(s)	322, 421
BspMAI	CTGCAG	2 cut(s)	349, 448
BsrDI	GCAATG	1 cut(s)	168
BssECI	CCNNGG	8 cut(s)	277, 278, 365, 376, 377, 464, 475, 476
BssMI	GATC	1 cut(s)	96
Bst2UI	CCWGG	6 cut(s)	267, 279, 366, 378, 465, 477
Bst4CI	ACNGT	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	330, 429
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstNI	CCWGG	6 cut(s)	267, 279, 366, 378, 465, 477
BstSCI	CCNGG	6 cut(s)	265, 277, 364, 376, 463, 475
BstSFI	CTRYAG	2 cut(s)	345, 444
BstSLI	GKGCMC	2 cut(s)	372, 471
BstV1I	GCAGC	2 cut(s)	245, 285
BsuRI	GGCC	2 cut(s)	70, 486
CaiI	CAGNNNCTG	2 cut(s)	329, 428
CsiI	ACCWGGT	1 cut(s)	265
Csp6I	GTAC	3 cut(s)	195, 225, 500
CviAII	CATG	9 cut(s)	39, 230, 290, 316, 335, 389, 415, 434, 488
CviQI	GTAC	3 cut(s)	195, 225, 500
DdeI	CTNAG	2 cut(s)	330, 429
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	484
EcoRII	CCWGG	6 cut(s)	265, 277, 364, 376, 463, 475
EcoT22I	ATGCAT	3 cut(s)	44, 295, 394
FaeI	CATG	9 cut(s)	42, 233, 293, 319, 338, 392, 418, 437, 491
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	9 cut(s)	38, 229, 289, 315, 334, 388, 414, 433, 487
FauI	CCCGC	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	234, 274
Fsp4HI	GCNGC	2 cut(s)	234, 274
FspBI	CTAG	2 cut(s)	26, 174
GluI	GCNGC	2 cut(s)	234, 274
HaeIII	GGCC	2 cut(s)	70, 486
Hin1II	CATG	9 cut(s)	42, 233, 293, 319, 338, 392, 418, 437, 491
HinfI	GANTC	3 cut(s)	92, 320, 419
HphI	GGTGA	2 cut(s)	155, 224
Hpy188I	TCNGA	2 cut(s)	325, 424
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	7 cut(s)	42, 57, 233, 293, 347, 392, 446
HpyF3I	CTNAG	2 cut(s)	330, 429
Hsp92II	CATG	9 cut(s)	42, 233, 293, 319, 338, 392, 418, 437, 491
Kzo9I	GATC	1 cut(s)	96
Lsp1109I	GCAGC	2 cut(s)	245, 285
MabI	ACCWGGT	1 cut(s)	265
MaeI	CTAG	2 cut(s)	26, 174
MaeIII	GTNAC	2 cut(s)	340, 439
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	2 cut(s)	14, 485
MhlI	GDGCHC	2 cut(s)	372, 471
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	5 cut(s)	33, 48, 128, 205, 516
MluNI	TGGCCA	1 cut(s)	486
MnlI	CCTC	5 cut(s)	55, 171, 198, 319, 418
Mox20I	TGGCCA	1 cut(s)	486
Mph1103I	ATGCAT	3 cut(s)	44, 295, 394
MroXI	GAANNNNTTC	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	486
MspR9I	CCNGG	6 cut(s)	267, 279, 366, 378, 465, 477
Mva1269I	GAATGC	2 cut(s)	293, 392
MvaI	CCWGG	6 cut(s)	267, 279, 366, 378, 465, 477
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	9 cut(s)	42, 233, 293, 319, 338, 392, 418, 437, 491
NsiI	ATGCAT	3 cut(s)	44, 295, 394
PasI	CCCWGGG	3 cut(s)	278, 377, 476
PctI	GAATGC	2 cut(s)	293, 392
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	3 cut(s)	92, 320, 419
PkrI	GCNGC	2 cut(s)	235, 275
Psp6I	CCWGG	6 cut(s)	265, 277, 364, 376, 463, 475
PspGI	CCWGG	6 cut(s)	265, 277, 364, 376, 463, 475
PstI	CTGCAG	2 cut(s)	349, 448
PstNI	CAGNNNCTG	2 cut(s)	329, 428
RsaI	GTAC	3 cut(s)	196, 226, 501
RsaNI	GTAC	3 cut(s)	195, 225, 500
SatI	GCNGC	2 cut(s)	234, 274
Sau3AI	GATC	1 cut(s)	96
ScaI	AGTACT	1 cut(s)	196
ScrFI	CCNGG	6 cut(s)	267, 279, 366, 378, 465, 477
SduI	GDGCHC	2 cut(s)	372, 471
SetI	ASST	4 cut(s)	190, 226, 259, 271
SexAI	ACCWGGT	1 cut(s)	265
SfcI	CTRYAG	2 cut(s)	345, 444
Sse9I	AATT	5 cut(s)	33, 48, 128, 205, 516
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	2 cut(s)	26, 174
StyD4I	CCNGG	6 cut(s)	265, 277, 364, 376, 463, 475
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	95, 108
TasI	AATT	5 cut(s)	33, 48, 128, 205, 516
TatI	WGTACW	2 cut(s)	194, 499
TfiI	GAWTC	3 cut(s)	92, 320, 419
TseI	GCWGC	2 cut(s)	233, 273
TspDTI	ATGAA	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	2 cut(s)	26, 174
ZrmI	AGTACT	1 cut(s)	196
Zsp2I	ATGCAT	3 cut(s)	44, 295, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.