Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016733

Physical Location & Seq

Genomic Coordinates Reverse (-)

25259672 .. 25260097

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1281900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAAGCTAAATGTTCTATTCTTCTTGCCTTTATTGCATGCATTGAAATTGTCTGCATTGAGGGTAGGCCATTTTTGGCAAAGAACAAAGAGTCGATCAACACAATCGAAGCCAACCCCAAAAGAGAATTGGGCGAGCAAGTCAGGCAACCCGCTTCCCATCACCACATTGCTAGTCCCAAGACACTTCACAGTACTGCTCATAATTTTGATGATATTTCAGGTACTCATGCAGCATATAAAGATGATTTTAGACCTACAACACCAGGCAACAGCCCTGCGGTTGGTCATAAATTCACAAAAAGCGGAGAATACATGGGAACAAAGGCTGATGATTTTGTTGGTGCAGGAAGGCCCACAGGACCTGGGCACAGCCCCGGGGTTGGCCATGTTGTTCAAGTACAAAATGCCAAACCAATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009966 GO:0009987 GO:0009991 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0022603 GO:0023051 GO:0030545 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0048018 GO:0048046 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0065007 GO:0065009 GO:0071496 GO:0071705 GO:0098772 GO:1900618 GO:1901371 GO:1902025 GO:1905421 GO:2000024 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.1

Weight (kDa)

7.82

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15750
malus_domestica	MD02G1169400.v1.1 MD15G1281900.v1.1
prunus_persica	Prupe.7G135900_v2.0.a1
rosa_laevigata	RLG00000017394
rosa_multiflora	Rmu_sc0000641.1_g000001 Rmu_sc0011101.1_g000013
rosa_roxburghii	Rroxscaffold_2G00138540
rosa_rugosa	Rorug02G0125600
rosa_samantha	Rh2AG176200 Rh2BG184100 Rh2CG180500 Rh2DG182200
rosa_wichuraiana	Rw2G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	153, 281, 306
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	293
AfaI	GTAC	3 cut(s)	196, 226, 402
AfiI	CCNNNNNNNGG	2 cut(s)	284, 383
AgsI	TTSAA	2 cut(s)	47, 398
AjnI	CCWGG	2 cut(s)	265, 364
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
AlwNI	CAGNNNCTG	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	3 cut(s)	68, 353, 385
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	354, 362
AsuC2I	CCSGG	2 cut(s)	378, 379
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	362
BaeGI	GKGCMC	1 cut(s)	372
BalI	TGGCCA	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	168
BciT130I	CCWGG	2 cut(s)	267, 366
BcnI	CCSGG	2 cut(s)	378, 379
BfaI	CTAG	1 cut(s)	174
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	4 cut(s)	267, 366, 378, 379
Bme18I	GGWCC	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	2 cut(s)	354, 362
BmrFI	CCNGG	4 cut(s)	267, 366, 378, 379
BpuMI	CCSGG	2 cut(s)	378, 379
BsaJI	CCNNGG	4 cut(s)	365, 376, 377, 378
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 383
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	267, 366
BseDI	CCNNGG	4 cut(s)	365, 376, 377, 378
BseLI	CCNNNNNNNGG	2 cut(s)	284, 383
BseMI	GCAATG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	70, 355, 387
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	378
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	284, 383
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	3 cut(s)	70, 355, 387
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	3 cut(s)	153, 281, 306
BspANI	GGCC	3 cut(s)	70, 355, 387
BsrDI	GCAATG	1 cut(s)	168
BssECI	CCNNGG	4 cut(s)	365, 376, 377, 378
BssMI	GATC	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	267, 366
Bst4CI	ACNGT	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	40, 137
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 145
BstNI	CCWGG	2 cut(s)	267, 366
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	4 cut(s)	265, 364, 376, 377
BstSLI	GKGCMC	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	245
BsuRI	GGCC	3 cut(s)	70, 355, 387
Cac8I	GCNNGC	2 cut(s)	40, 137
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	354, 362
Cfr9I	CCCGGG	1 cut(s)	377
Csp6I	GTAC	3 cut(s)	195, 225, 401
CviAII	CATG	4 cut(s)	39, 230, 316, 389
CviJI	RGCY	8 cut(s)	8, 70, 113, 276, 329, 355, 375, 387
CviKI_1	RGCY	8 cut(s)	8, 70, 113, 276, 329, 355, 375, 387
CviQI	GTAC	3 cut(s)	195, 225, 401
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	265, 364
EcoT22I	ATGCAT	1 cut(s)	44
FaeI	CATG	4 cut(s)	42, 233, 319, 392
FaiI	YATR	9 cut(s)	40, 204, 231, 238, 240, 291, 317, 390, 424
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	4 cut(s)	38, 229, 315, 388
FauI	CCCGC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	70, 355, 387
HapII	CCGG	1 cut(s)	378
Hin1II	CATG	4 cut(s)	42, 233, 319, 392
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	5 cut(s)	38, 42, 57, 233, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 145
Hsp92II	CATG	4 cut(s)	42, 233, 319, 392
Kzo9I	GATC	1 cut(s)	96
Lsp1109I	GCAGC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	174
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	372
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	5 cut(s)	48, 128, 205, 293, 417
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	1 cut(s)	55
Mox20I	TGGCCA	1 cut(s)	387
Mph1103I	ATGCAT	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	387
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	4 cut(s)	267, 366, 378, 379
MvaI	CCWGG	2 cut(s)	267, 366
MwoI	GCNNNNNNNGC	2 cut(s)	35, 145
NciI	CCSGG	2 cut(s)	378, 379
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	4 cut(s)	42, 233, 319, 392
NsiI	ATGCAT	1 cut(s)	44
NspI	RCATGY	1 cut(s)	42
PaeI	GCATGC	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	265, 364
PspGI	CCWGG	2 cut(s)	265, 364
PspPI	GGNCC	2 cut(s)	354, 362
PspPPI	RGGWCCY	1 cut(s)	362
PstNI	CAGNNNCTG	1 cut(s)	365
RsaI	GTAC	3 cut(s)	196, 226, 402
RsaNI	GTAC	3 cut(s)	195, 225, 401
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	2 cut(s)	354, 362
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	4 cut(s)	267, 366, 378, 379
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	4 cut(s)	10, 226, 259, 367
SinI	GGWCC	1 cut(s)	362
SmaI	CCCGGG	1 cut(s)	379
SphI	GCATGC	1 cut(s)	42
Sse9I	AATT	5 cut(s)	48, 128, 205, 293, 417
SsiI	CCGC	3 cut(s)	153, 281, 306
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	4 cut(s)	265, 364, 376, 377
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	95, 108
TasI	AATT	5 cut(s)	48, 128, 205, 293, 417
TatI	WGTACW	2 cut(s)	194, 400
TseI	GCWGC	1 cut(s)	233
TspMI	CCCGGG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	42
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmaI	CCCGGG	1 cut(s)	377
XspI	CTAG	1 cut(s)	174
ZrmI	AGTACT	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.