Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016733

Physical Location & Seq

Genomic Coordinates Reverse (-)

16077626 .. 16078441

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017394

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAAGCTAAATGTGCTATTCTTTTTGCCCTAATAGCATGCCTCGAAATTGTGTCTATTGAGGGAATAAGGCCCTTTTGGCCAGAAAAAAAAATTGCAGAGACGATCGTCATCGATGCCATTGAAGCTAACTATAAAAGAGAATTGGGAGAGCAAAGCAGCCATCCCAACAACGTGAAGGGAGAAGTCAAAAGTGCAGTGGTGAAGAATCAAGGACACTTCGGTAAGTCGGGAACTGCAGCATACAATGACGAAGAAGATTTTCGACCTACAACACCAGGTAACAGCCCCGGTGCTGGTCATAAGTCATTACAAGGCAGTGAACCAAAGACACCAGTGGGTGTTGGGAAGTATTTTGCTACAGAAACGAAAGAAGATTACCGGACAACCCAACCTGGTCACAGCCCTGGTGTGGGCCATGCTCTTCATCAAGAAAATGTCAAACCAAGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009966 GO:0009987 GO:0009991 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0022603 GO:0023051 GO:0030545 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0048018 GO:0048046 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0065007 GO:0065009 GO:0071496 GO:0071705 GO:0098772 GO:1900618 GO:1901371 GO:1902025 GO:1905421 GO:2000024 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.36

Weight (kDa)

6.59

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15750
malus_domestica	MD02G1169400.v1.1 MD15G1281900.v1.1
prunus_persica	Prupe.7G135900_v2.0.a1
rosa_laevigata	RLG00000017394
rosa_multiflora	Rmu_sc0000641.1_g000001 Rmu_sc0011101.1_g000013
rosa_roxburghii	Rroxscaffold_2G00138540
rosa_rugosa	Rorug02G0125600
rosa_samantha	Rh2AG176200 Rh2BG184100 Rh2CG180500 Rh2DG182200
rosa_wichuraiana	Rw2G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	296, 412, 413
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	3 cut(s)	277, 394, 406
AluBI	AGCT	2 cut(s)	8, 128
AluI	AGCT	2 cut(s)	8, 128
Alw26I	GTCTC	1 cut(s)	95
AoxI	GGCC	4 cut(s)	71, 80, 415, 449
ApeKI	GCWGC	2 cut(s)	159, 239
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	72, 415
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	171, 251
BccI	CCATC	1 cut(s)	171
BciT130I	CCWGG	3 cut(s)	279, 396, 408
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	95
BfmI	CTRYAG	2 cut(s)	237, 360
BglI	GCCNNNNNGGC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	160, 240
BlsI	GCNGC	2 cut(s)	161, 241
Bme1390I	CCNGG	4 cut(s)	279, 291, 396, 408
BmgT120I	GGNCC	2 cut(s)	72, 415
BmrFI	CCNGG	4 cut(s)	279, 291, 396, 408
BmsI	GCATC	1 cut(s)	106
BoxI	GACNNNNGTC	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	289, 406, 446
BsaWI	WCCGGW	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 412, 413
Bse1I	ACTGG	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	110
BseBI	CCWGG	3 cut(s)	279, 396, 408
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	289, 406, 446
BseGI	GGATG	1 cut(s)	163
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	3 cut(s)	296, 412, 413
BseNI	ACTGG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	171, 251
BsgI	GTGCAG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	4 cut(s)	73, 82, 417, 451
BshVI	ATCGAT	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	291, 382
BslI	CCNNNNNNNGG	3 cut(s)	296, 412, 413
BsmAI	GTCTC	1 cut(s)	95
BsmBI	CGTCTC	1 cut(s)	95
BsnI	GGCC	4 cut(s)	73, 82, 417, 451
Bsp143I	GATC	1 cut(s)	105
BspANI	GGCC	4 cut(s)	73, 82, 417, 451
BspDI	ATCGAT	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	241
BspQI	GCTCTTC	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	289, 406, 446
BssMI	GATC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	3 cut(s)	279, 396, 408
Bst6I	CTCTTC	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	1 cut(s)	108
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	105
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 35, 79, 125
BstNI	CCWGG	3 cut(s)	279, 396, 408
BstNSI	RCATGY	1 cut(s)	42
BstPAI	GACNNNNGTC	1 cut(s)	107
BstSCI	CCNGG	4 cut(s)	277, 289, 394, 406
BstSFI	CTRYAG	2 cut(s)	237, 360
BstV1I	GCAGC	2 cut(s)	171, 251
Bsu15I	ATCGAT	1 cut(s)	114
BsuRI	GGCC	4 cut(s)	73, 82, 417, 451
BsuTUI	ATCGAT	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	2 cut(s)	204, 325
BtsIMutI	CAGTG	3 cut(s)	204, 325, 342
Cac8I	GCNNGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	72, 415
ClaI	ATCGAT	1 cut(s)	114
CsiI	ACCWGGT	2 cut(s)	277, 394
CviAII	CATG	2 cut(s)	39, 419
CviJI	RGCY	9 cut(s)	8, 73, 82, 128, 162, 288, 405, 417, 451
CviKI_1	RGCY	9 cut(s)	8, 73, 82, 128, 162, 288, 405, 417, 451
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	3 cut(s)	277, 394, 406
EcoT14I	CCWWGG	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	446
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	2 cut(s)	42, 422
FaiI	YATR	6 cut(s)	40, 135, 244, 303, 420, 454
FatI	CATG	2 cut(s)	38, 418
Fnu4HI	GCNGC	2 cut(s)	160, 240
FokI	GGATG	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	160, 240
GluI	GCNGC	2 cut(s)	160, 240
HaeIII	GGCC	4 cut(s)	73, 82, 417, 451
HapII	CCGG	2 cut(s)	291, 382
Hin1II	CATG	2 cut(s)	42, 422
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	2 cut(s)	291, 382
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188III	TCNNGA	2 cut(s)	231, 431
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	3 cut(s)	98, 197, 239
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 35, 79, 125
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	42, 422
Kzo9I	GATC	1 cut(s)	105
LguI	GCTCTTC	1 cut(s)	429
Lsp1109I	GCAGC	2 cut(s)	171, 251
LweI	GCATC	1 cut(s)	106
MabI	ACCWGGT	2 cut(s)	277, 394
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	281, 398
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	5 cut(s)	217, 266, 269, 386, 416
MlsI	TGGCCA	1 cut(s)	82
MluCI	AATT	3 cut(s)	48, 93, 143
MluNI	TGGCCA	1 cut(s)	82
MnlI	CCTC	2 cut(s)	53, 55
Mox20I	TGGCCA	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	82
Msp20I	TGGCCA	1 cut(s)	82
MspI	CCGG	2 cut(s)	291, 382
MspR9I	CCNGG	4 cut(s)	279, 291, 396, 408
MvaI	CCWGG	3 cut(s)	279, 396, 408
MwoI	GCNNNNNNNGC	4 cut(s)	14, 35, 79, 125
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	2 cut(s)	42, 422
NmuCI	GTSAC	1 cut(s)	398
NspI	RCATGY	1 cut(s)	42
PaeI	GCATGC	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	161, 241
Ple19I	CGATCG	1 cut(s)	108
PshAI	GACNNNNGTC	1 cut(s)	107
Psp6I	CCWGG	3 cut(s)	277, 394, 406
PspGI	CCWGG	3 cut(s)	277, 394, 406
PspPI	GGNCC	2 cut(s)	72, 415
PstI	CTGCAG	1 cut(s)	241
PvuI	CGATCG	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	429
SatI	GCNGC	2 cut(s)	160, 240
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	2 cut(s)	72, 415
ScrFI	CCNGG	4 cut(s)	279, 291, 396, 408
SetI	ASST	6 cut(s)	10, 130, 177, 271, 283, 397
SexAI	ACCWGGT	2 cut(s)	277, 394
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	2 cut(s)	237, 360
SfiI	GGCCNNNNNGGCC	1 cut(s)	79
SphI	GCATGC	1 cut(s)	42
Sse9I	AATT	3 cut(s)	48, 93, 143
StyD4I	CCNGG	4 cut(s)	277, 289, 394, 406
StyI	CCWWGG	1 cut(s)	446
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	3 cut(s)	45, 114, 265
TasI	AATT	3 cut(s)	48, 93, 143
TfiI	GAWTC	1 cut(s)	208
TscAI	CASTG	3 cut(s)	204, 325, 342
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	2 cut(s)	159, 239
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	1 cut(s)	416
TspRI	CASTG	3 cut(s)	204, 325, 342
XceI	RCATGY	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.