Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016733

Physical Location & Seq

Genomic Coordinates Forward (+)

15312734 .. 15313702

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G135900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAAGCTAAATGTGCTTTTCTTCTTGCACTAATTGCATGCTTTGAAATTGTGTGCATTGAGGGCAGGCCATTTTGGCCGAAGAACAAAGAGTTGATCAGCACAATTGAAGCTAACTCTAAAAGGGAATTGGGAGAGCAAGGCAGCCAACCCACACCCCATCACATTGCTAGTCCCATGGCACCTGATCATGATTCAATTTCAGGTACTCATGCAGCATATACAGATGATTTTAGACCTACAACACCAGGAAACAGCCCTGGTGTTGGTCATAAATTCACACACACAAGAGAGCAACCAGCAACAGCTAGGAAATCTGTTACTGCAGGAACAAGGCCCACAGCACCTGGTCACAGCCCTGGTGTTGGCCATGTTGTTCAACTACAAAATGCCAAACCAAGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009966 GO:0009987 GO:0009991 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0022603 GO:0023051 GO:0030545 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0048018 GO:0048046 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0065007 GO:0065009 GO:0071496 GO:0071705 GO:0098772 GO:1900618 GO:1901371 GO:1902025 GO:1905421 GO:2000024 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.43

Weight (kDa)

7.83

Isoelectric Point (pI)

58.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15750
malus_domestica	MD02G1169400.v1.1 MD15G1281900.v1.1
prunus_persica	Prupe.7G135900_v2.0.a1
rosa_laevigata	RLG00000017394
rosa_multiflora	Rmu_sc0000641.1_g000001 Rmu_sc0011101.1_g000013
rosa_roxburghii	Rroxscaffold_2G00138540
rosa_rugosa	Rorug02G0125600
rosa_samantha	Rh2AG176200 Rh2BG184100 Rh2CG180500 Rh2DG182200
rosa_wichuraiana	Rw2G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AcoI	YGGCCR	2 cut(s)	77, 367
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	266, 365
AgsI	TTSAA	4 cut(s)	47, 110, 198, 380
AjnI	CCWGG	4 cut(s)	247, 259, 346, 358
AluBI	AGCT	3 cut(s)	8, 113, 308
AluI	AGCT	3 cut(s)	8, 113, 308
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	4 cut(s)	68, 77, 335, 367
ApeKI	GCWGC	2 cut(s)	144, 215
ApoI	RAATTY	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	156, 227
BccI	CCATC	1 cut(s)	168
BciT130I	CCWGG	4 cut(s)	249, 261, 348, 360
BclI	TGATCA	2 cut(s)	96, 187
BfaI	CTAG	2 cut(s)	171, 309
BfmI	CTRYAG	1 cut(s)	324
BglI	GCCNNNNNGGC	1 cut(s)	76
BisI	GCNGC	2 cut(s)	145, 216
BlsI	GCNGC	2 cut(s)	146, 217
Bme1390I	CCNGG	4 cut(s)	249, 261, 348, 360
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	4 cut(s)	249, 261, 348, 360
BsaJI	CCNNGG	3 cut(s)	177, 259, 358
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 365
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	4 cut(s)	249, 261, 348, 360
BseDI	CCNNGG	3 cut(s)	177, 259, 358
BseLI	CCNNNNNNNGG	2 cut(s)	266, 365
BseMI	GCAATG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	156, 227
BshFI	GGCC	4 cut(s)	70, 79, 337, 369
BshNI	GGYRCC	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	266, 365
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	4 cut(s)	70, 79, 337, 369
Bsp143I	GATC	2 cut(s)	96, 187
Bsp19I	CCATGG	1 cut(s)	177
BspANI	GGCC	4 cut(s)	70, 79, 337, 369
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	165
BssECI	CCNNGG	3 cut(s)	177, 259, 358
BssMI	GATC	2 cut(s)	96, 187
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	4 cut(s)	249, 261, 348, 360
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	40, 68
BstDSI	CCRYGG	1 cut(s)	177
BstKTI	GATC	2 cut(s)	99, 190
BstMBI	GATC	2 cut(s)	96, 187
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 35, 63, 76
BstNI	CCWGG	4 cut(s)	249, 261, 348, 360
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	4 cut(s)	247, 259, 346, 358
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	156, 227
BsuRI	GGCC	4 cut(s)	70, 79, 337, 369
BtgI	CCRYGG	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	40, 68
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	336
CsiI	ACCWGGT	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	5 cut(s)	39, 178, 191, 212, 371
CviQI	GTAC	1 cut(s)	207
DpnI	GATC	2 cut(s)	98, 189
DpnII	GATC	2 cut(s)	96, 187
EaeI	YGGCCR	2 cut(s)	77, 367
Eco130I	CCWWGG	1 cut(s)	177
EcoRII	CCWGG	4 cut(s)	247, 259, 346, 358
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	5 cut(s)	42, 181, 194, 215, 374
FaiI	YATR	9 cut(s)	40, 179, 192, 213, 220, 222, 273, 372, 406
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	5 cut(s)	38, 177, 190, 211, 370
FbaI	TGATCA	2 cut(s)	96, 187
Fnu4HI	GCNGC	2 cut(s)	145, 216
Fsp4HI	GCNGC	2 cut(s)	145, 216
FspBI	CTAG	2 cut(s)	171, 309
GluI	GCNGC	2 cut(s)	145, 216
HaeIII	GGCC	4 cut(s)	70, 79, 337, 369
Hin1II	CATG	5 cut(s)	42, 181, 194, 215, 374
HinfI	GANTC	1 cut(s)	194
Hpy188III	TCNNGA	1 cut(s)	191
HpyCH4V	TGCA	5 cut(s)	29, 38, 57, 215, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 35, 63, 76
Hsp92II	CATG	5 cut(s)	42, 181, 194, 215, 374
Ksp22I	TGATCA	2 cut(s)	96, 187
Kzo9I	GATC	2 cut(s)	96, 187
Lsp1109I	GCAGC	2 cut(s)	156, 227
MabI	ACCWGGT	1 cut(s)	346
MaeI	CTAG	2 cut(s)	171, 309
MaeIII	GTNAC	2 cut(s)	319, 350
MalI	GATC	2 cut(s)	98, 189
MboI	GATC	2 cut(s)	96, 187
MboII	GAAGA	2 cut(s)	14, 94
MfeI	CAATTG	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	6 cut(s)	33, 48, 105, 128, 198, 275
MluNI	TGGCCA	1 cut(s)	369
MnlI	CCTC	1 cut(s)	55
Mox20I	TGGCCA	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	369
MspR9I	CCNGG	4 cut(s)	249, 261, 348, 360
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	4 cut(s)	249, 261, 348, 360
MwoI	GCNNNNNNNGC	4 cut(s)	14, 35, 63, 76
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	96, 187
NlaIII	CATG	5 cut(s)	42, 181, 194, 215, 374
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	1 cut(s)	42
PaeI	GCATGC	1 cut(s)	42
PagI	TCATGA	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	146, 217
Psp6I	CCWGG	4 cut(s)	247, 259, 346, 358
PspGI	CCWGG	4 cut(s)	247, 259, 346, 358
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	336
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SatI	GCNGC	2 cut(s)	145, 216
Sau3AI	GATC	2 cut(s)	96, 187
Sau96I	GGNCC	1 cut(s)	336
ScrFI	CCNGG	4 cut(s)	249, 261, 348, 360
SetI	ASST	7 cut(s)	10, 115, 187, 208, 241, 310, 349
SexAI	ACCWGGT	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	324
SfiI	GGCCNNNNNGGCC	1 cut(s)	76
SphI	GCATGC	1 cut(s)	42
Sse9I	AATT	6 cut(s)	33, 48, 105, 128, 198, 275
SspMI	CTAG	2 cut(s)	171, 309
StyD4I	CCNGG	4 cut(s)	247, 259, 346, 358
StyI	CCWWGG	1 cut(s)	177
TasI	AATT	6 cut(s)	33, 48, 105, 128, 198, 275
TfiI	GAWTC	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	2 cut(s)	144, 215
Tsp45I	GTSAC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	42
XspI	CTAG	2 cut(s)	171, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.