FvH4_1g17400

UPF0553 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016736
Physical Location & Seq
Reverse (-)
10072722 .. 10076235
3514 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17400.t1

Sequence Viewer

Length: 918 bp
ATGGATGATGTCAGGGGTACCTCTGCTTGGGTGGCCAACCACTCCTCCCACGTCGTCGTCGACTCCTCCGGGATTGAGAAAGTTGCGGAGACAATAGACGAGATTCCGAAGGTGAACTGGGATTTCGAAGGGATTCATTACTTTGACAATGGGCCGCTCACTGTTCAGTACCTGTTTGTGTTGGATGCTTTGAATTTCTGTTTCTGGCCAGATAAGGACTTAAATTACGACAATTTGGCAGCGGGTCTAAAGGAAGCTCTACTAAATGACAAATCTGCATTTGATGCTGATCGTCTGCAGAAGTACACTGGTCCTGAACTAAGGAAGCTGTTGAAATGGCCTAGGCCACTACCTTTGGAGGATGAGAGAGTTCGCTTGTTACATGAGGTTGGATTTGAGCTTGAGAGAAGCTTCGATGGAAAAGCGTCCAATCTTGTGGAGTCCTGTGGAAAATCAGCTGTTAAGCTTGTAGCTATGGTCACTCGTCACTTTCCTGGCTTTCGAGACCACTCGGTGTACAAAGGCCACCAAGTATTCTTGTATAAAAGAGCGCAGATACTTGCTGCAGATCTATGGGGTGCATATGGTGGCAAAGGATATGGAGAATTTTATGACATTGCATCAATCACTATTATGGCGGACTATATTGTTCCAGCTGTGCTGCGGAAGCTTGGTGTGCTCAAATATAGTGAAACCCTTGCCAGCATGATTGAGAAGAAAAGTGAAATAGATCCGGGCAGTGAGGAGGAAGTTGAACTACGAGCATGCTCCATATATGCCGTAGAGAAAATGAAGGACTTGATCAGCATAAAATTAGGGAGGAAGGTTCTGAGTATTGAGTTAGACCTTTGGCTGTGGTCTTTTGGCATCCAAATTCCTGCTCTGCAACACCACCGAACACTCTCTATCTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Q_salvage

Protein Analysis

306

Amino Acids

34.65

Weight (kDa)

5.64

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Q_salvage PF10343 46 - 305 4.4e-88 Queuosine salvage protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016736)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17400 FvH4_1g17400
malus_domestica MD00G1015500.v1.1 MD15G1294900.v1.1
prunus_persica Prupe.6G222900_v2.0.a1
pyrus_communis pycom15g25770
rosa_chinensis RchiOBHm_Chr2g0107591
rosa_laevigata RLG00000017593
rosa_multiflora Rmu_sc0000800.1_g000030
rosa_roxburghii Rroxscaffold_2G00136170
rosa_rugosa Rorug02G0145200
rosa_samantha Rh2BG207700 Rh2DG202600
rosa_wichuraiana Rw2G015460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 157
AccI GTMKAC 1 cut(s) 60
AciI CCGC 5 cut(s) 86, 155, 242, 638, 664
AclWI GGATC 1 cut(s) 725
AcoI YGGCCR 2 cut(s) 33, 206
AcsI RAATTY 3 cut(s) 193, 605, 873
AdeI CACNNNGTG 1 cut(s) 514
AfaI GTAC 4 cut(s) 19, 170, 305, 518
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 3 cut(s) 193, 334, 755
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 9 cut(s) 257, 328, 400, 411, 458, 466, 473, 656, 670
AluI AGCT 9 cut(s) 257, 328, 400, 411, 458, 466, 473, 656, 670
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 2 cut(s) 83, 498
AlwI GGATC 1 cut(s) 725
AlwNI CAGNNNCTG 1 cut(s) 172
AoxI GGCC 6 cut(s) 33, 152, 206, 338, 344, 523
ApeKI GCWGC 3 cut(s) 239, 563, 661
ApoI RAATTY 3 cut(s) 193, 605, 873
Asp700I GAANNNNTTC 1 cut(s) 132
Asp718I GGTACC 1 cut(s) 17
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 2 cut(s) 152, 311
AsuC2I CCSGG 2 cut(s) 70, 735
AsuHPI GGTGA 1 cut(s) 124
AsuII TTCGAA 1 cut(s) 126
AvaII GGWCC 1 cut(s) 311
AvrII CCTAGG 1 cut(s) 341
BalI TGGCCA 2 cut(s) 35, 208
BanI GGYRCC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 741, 773
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 3 cut(s) 251, 550, 648
BccI CCATC 1 cut(s) 410
BceAI ACGGC 1 cut(s) 764
BciT130I CCWGG 1 cut(s) 495
BclI TGATCA 1 cut(s) 801
BcnI CCSGG 2 cut(s) 70, 735
BcoDI GTCTC 2 cut(s) 83, 498
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 2 cut(s) 296, 564
BglII AGATCT 1 cut(s) 568
BisI GCNGC 4 cut(s) 155, 240, 564, 662
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 4 cut(s) 156, 241, 565, 663
Bme1390I CCNGG 3 cut(s) 70, 495, 735
Bme18I GGWCC 1 cut(s) 311
BmgBI CACGTC 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 152, 311
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 3 cut(s) 70, 495, 735
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 4 cut(s) 175, 274, 629, 876
BmuI ACTGGG 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 70, 735
BsaBI GATNNNNATC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 2 cut(s) 122, 313
Bse3DI GCAATG 1 cut(s) 615
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 4 cut(s) 10, 190, 367, 867
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 1 cut(s) 821
BseNI ACTGG 2 cut(s) 122, 313
BseRI GAGGAG 3 cut(s) 34, 55, 758
BseXI GCAGC 3 cut(s) 251, 550, 648
BshFI GGCC 6 cut(s) 35, 154, 208, 340, 346, 525
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 681
BsiSI CCGG 2 cut(s) 69, 734
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 2 cut(s) 83, 498
BsnI GGCC 6 cut(s) 35, 154, 208, 340, 346, 525
Bso31I GGTCTC 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 681
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 4 cut(s) 289, 568, 730, 801
BspACI CCGC 5 cut(s) 86, 155, 242, 638, 664
BspANI GGCC 6 cut(s) 35, 154, 208, 340, 346, 525
BspCNI CTCAG 1 cut(s) 822
BspLI GGNNCC 1 cut(s) 19
BspMAI CTGCAG 2 cut(s) 300, 568
BspPI GGATC 1 cut(s) 725
BspT104I TTCGAA 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 498
BsrBI CCGCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 615
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 2 cut(s) 122, 313
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 4 cut(s) 289, 568, 730, 801
BssT1I CCWWGG 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 163
BstAPI GCANNNNNTGC 1 cut(s) 284
BstAUI TGTACA 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 703, 766
BstDEI CTNAG 2 cut(s) 320, 830
BstF5I GGATG 4 cut(s) 10, 190, 367, 867
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 4 cut(s) 292, 571, 733, 804
BstMAI GTCTC 2 cut(s) 83, 498
BstMBI GATC 4 cut(s) 289, 568, 730, 801
BstMWI GCNNNNNNNGC 4 cut(s) 32, 284, 667, 676
BstNI CCWGG 1 cut(s) 495
BstNSI RCATGY 1 cut(s) 768
BstSCI CCNGG 3 cut(s) 68, 493, 733
BstSFI CTRYAG 2 cut(s) 296, 564
BstV1I GCAGC 3 cut(s) 251, 550, 648
BstX2I RGATCY 2 cut(s) 568, 730
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 2 cut(s) 568, 730
BsuRI GGCC 6 cut(s) 35, 154, 208, 340, 346, 525
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 4 cut(s) 10, 190, 367, 867
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 3 cut(s) 159, 306, 745
Cac8I GCNNGC 2 cut(s) 703, 766
CaiI CAGNNNCTG 1 cut(s) 172
CfoI GCGC 1 cut(s) 553
Cfr13I GGNCC 2 cut(s) 152, 311
CseI GACGC 1 cut(s) 414
Csp6I GTAC 4 cut(s) 18, 169, 304, 517
CspCI CAANNNNNGTGG 2 cut(s) 336, 371
CviAII CATG 3 cut(s) 383, 706, 765
CviQI GTAC 4 cut(s) 18, 169, 304, 517
DdeI CTNAG 2 cut(s) 320, 830
DpnI GATC 4 cut(s) 291, 570, 732, 803
DpnII GATC 4 cut(s) 289, 568, 730, 801
DraIII CACNNNGTG 1 cut(s) 514
EaeI YGGCCR 2 cut(s) 33, 206
EciI GGCGGA 1 cut(s) 653
Eco130I CCWWGG 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 341
FaeI CATG 3 cut(s) 386, 709, 768
FatI CATG 3 cut(s) 382, 705, 764
FauI CCCGC 1 cut(s) 235
FauNDI CATATG 1 cut(s) 583
FbaI TGATCA 1 cut(s) 801
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 4 cut(s) 155, 240, 564, 662
FokI GGATG 4 cut(s) 17, 197, 374, 854
Fsp4HI GCNGC 4 cut(s) 155, 240, 564, 662
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 552
GluI GCNGC 4 cut(s) 155, 240, 564, 662
HaeIII GGCC 6 cut(s) 35, 154, 208, 340, 346, 525
HapII CCGG 2 cut(s) 69, 734
HgaI GACGC 1 cut(s) 414
HhaI GCGC 1 cut(s) 553
Hin1II CATG 3 cut(s) 386, 709, 768
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 3 cut(s) 409, 464, 668
HinfI GANTC 4 cut(s) 62, 103, 133, 440
HpaII CCGG 2 cut(s) 69, 734
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 4 cut(s) 61, 115, 306, 517
Hpy188I TCNGA 2 cut(s) 108, 831
Hpy188III TCNNGA 2 cut(s) 314, 503
Hpy8I GTNNAC 4 cut(s) 61, 115, 306, 517
Hpy99I CGWCG 3 cut(s) 56, 59, 62
HpyAV CCTTC 4 cut(s) 103, 122, 787, 817
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 6 cut(s) 278, 298, 566, 581, 620, 886
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 284, 667, 676
HpyF3I CTNAG 2 cut(s) 320, 830
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 3 cut(s) 386, 709, 768
HspAI GCGC 1 cut(s) 551
KpnI GGTACC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 801
Kzo9I GATC 4 cut(s) 289, 568, 730, 801
LmnI GCTCC 1 cut(s) 773
Lsp1109I GCAGC 3 cut(s) 251, 550, 648
LweI GCATC 4 cut(s) 175, 274, 629, 876
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 3 cut(s) 378, 478, 485
MalI GATC 4 cut(s) 291, 570, 732, 803
MbiI CCGCTC 1 cut(s) 157
MboI GATC 4 cut(s) 289, 568, 730, 801
MboII GAAGA 1 cut(s) 727
MflI RGATCY 2 cut(s) 568, 730
MhlI GDGCHC 1 cut(s) 681
MlsI TGGCCA 2 cut(s) 35, 208
MluCI AATT 6 cut(s) 193, 223, 232, 605, 812, 873
MluNI TGGCCA 2 cut(s) 35, 208
MlyI GAGTC 2 cut(s) 56, 449
MmeI TCCRAC 2 cut(s) 162, 370
MnlI CCTC 8 cut(s) 31, 55, 76, 352, 379, 736, 739, 813
Mox20I TGGCCA 2 cut(s) 35, 208
MroXI GAANNNNTTC 1 cut(s) 132
MscI TGGCCA 2 cut(s) 35, 208
MseI TTAA 2 cut(s) 221, 462
MslI CAYNNNNRTG 1 cut(s) 632
Msp20I TGGCCA 2 cut(s) 35, 208
MspA1I CMGCKG 3 cut(s) 242, 458, 656
MspI CCGG 2 cut(s) 69, 734
MspR9I CCNGG 3 cut(s) 70, 495, 735
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 4 cut(s) 32, 284, 667, 676
NciI CCSGG 2 cut(s) 70, 735
NdeI CATATG 1 cut(s) 583
NdeII GATC 4 cut(s) 289, 568, 730, 801
NlaIII CATG 3 cut(s) 386, 709, 768
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 2 cut(s) 478, 485
NspI RCATGY 1 cut(s) 768
NspV TTCGAA 1 cut(s) 126
PaeI GCATGC 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 103, 133
PfoI TCCNGGA 1 cut(s) 68
PkrI GCNGC 4 cut(s) 156, 241, 565, 663
PleI GAGTC 2 cut(s) 56, 448
PpsI GAGTC 2 cut(s) 56, 448
Psp6I CCWGG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 152, 311
PstI CTGCAG 2 cut(s) 300, 568
PstNI CAGNNNCTG 1 cut(s) 172
PsuI RGATCY 2 cut(s) 568, 730
PvuII CAGCTG 2 cut(s) 458, 656
RsaI GTAC 4 cut(s) 19, 170, 305, 518
RsaNI GTAC 4 cut(s) 18, 169, 304, 517
RseI CAYNNNNRTG 1 cut(s) 632
SalI GTCGAC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 221, 462
SatI GCNGC 4 cut(s) 155, 240, 564, 662
Sau3AI GATC 4 cut(s) 289, 568, 730, 801
Sau96I GGNCC 2 cut(s) 152, 311
SchI GAGTC 2 cut(s) 56, 449
ScrFI CCNGG 3 cut(s) 70, 495, 735
SduI GDGCHC 1 cut(s) 681
SfaNI GCATC 4 cut(s) 175, 274, 629, 876
SfcI CTRYAG 2 cut(s) 296, 564
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SphI GCATGC 1 cut(s) 768
Sse9I AATT 6 cut(s) 193, 223, 232, 605, 812, 873
SsiI CCGC 5 cut(s) 86, 155, 242, 638, 664
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 68, 493, 733
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 54
TaqI TCGA 4 cut(s) 60, 126, 414, 502
TasI AATT 6 cut(s) 193, 223, 232, 605, 812, 873
TatI WGTACW 2 cut(s) 303, 516
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 2 cut(s) 103, 133
Tru1I TTAA 2 cut(s) 221, 462
Tru9I TTAA 2 cut(s) 221, 462
TscAI CASTG 3 cut(s) 166, 313, 745
TseFI GTSAC 2 cut(s) 478, 485
TseI GCWGC 3 cut(s) 239, 563, 661
Tsp45I GTSAC 2 cut(s) 478, 485
TspDTI ATGAA 2 cut(s) 125, 806
TspRI CASTG 3 cut(s) 166, 313, 745
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 3 cut(s) 193, 605, 873
XceI RCATGY 1 cut(s) 768
XmaJI CCTAGG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.