RLG00000017593

UPF0553 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016736
Physical Location & Seq
Reverse (-)
18779050 .. 18782143
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017593

Sequence Viewer

Length: 918 bp
ATGGACGATGTTAGGGGTACCTCTGCTTGGGTCGCCAACCACTCTTCTCACGTCGTCGTCGACTCCTCAGGGATTGAGAAAGTGGCGGAGACTATAGACGAAATTCCGAAGGTGAACTGGGATTTCGAAGGGATTCACTATTTTGACAATGGGCCGCTCACGGTTCAGTACCTCTTTGTGTTGGATGCTTTGAATTTCTGCTTTTGGCCAGATAAGGACTTGAATTACGACAATTTGGCAGCAGGTCTAAAGGAAGCTCTACTGAATGACAAATCTGCATTTGATGCTGATCGTCTGCAGAAGTACACTGGTCCTGAACTAAGGGAGCTGTTCAAATGGCCTAGGCCACTACCTTTGGAGGATGAGAGAGTTCGCTTGTTACATGAGGTTGGATTCGAGCTTGAGAGAAGCTTTGATGGGAAAGCATCCAATCTTGTGGAGTCCTGTGGAAAATCAGCTGTTAAGCTTGTAGCTATGGTTACTCGTCACTTTCCTGGCTTTCGAGACCACTCGGTATACAAAGGCCACCAAGTATTCTTGTATAAAAGAGCTCAGATACTTGCTGCAGATTTATGGGGTGCATATGGTGGCAAAGGATATGGAGAATTTTATGACATTGGGTCAATCACTATTATGGCCGACTATATTGTTCCAGCTGTGCTTCGGCAGCTTGGTGTGCTCAAATATAGTGAAACCCTTGCCAGCATGATCGAGAAGAAAAGTGAAATAGATCCAGGCAGTGAGGAGGAAGTTGAACTACGAGCTTGCTCCATATATGCCGTGGAGAAAATGAAGGACTTGATCAGTATAAAATTAGGGAGGAAGGTTCTGAGTATTGAGTTAGACCTTTGGCTGTGGTCTTTTGGCATCCAATGTCCTGCCCTGCAACACCACCGAACGCTTTCTATTTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Q_salvage

Protein Analysis

306

Amino Acids

34.66

Weight (kDa)

5.34

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Q_salvage PF10343 46 - 305 1.9e-88 Queuosine salvage protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016736)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17400 FvH4_1g17400
malus_domestica MD00G1015500.v1.1 MD15G1294900.v1.1
prunus_persica Prupe.6G222900_v2.0.a1
pyrus_communis pycom15g25770
rosa_chinensis RchiOBHm_Chr2g0107591
rosa_laevigata RLG00000017593
rosa_multiflora Rmu_sc0000800.1_g000030
rosa_roxburghii Rroxscaffold_2G00136170
rosa_rugosa Rorug02G0145200
rosa_samantha Rh2BG207700 Rh2DG202600
rosa_wichuraiana Rw2G015460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 233
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 157
AccI GTMKAC 2 cut(s) 60, 516
AciI CCGC 2 cut(s) 86, 155
AclWI GGATC 1 cut(s) 725
AcoI YGGCCR 2 cut(s) 206, 636
AcsI RAATTY 3 cut(s) 102, 193, 605
AfaI GTAC 3 cut(s) 19, 170, 305
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 4 cut(s) 193, 223, 334, 755
AhdI GACNNNNNGTC 1 cut(s) 619
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 2 cut(s) 493, 733
Alw21I GWGCWC 2 cut(s) 553, 681
Alw26I GTCTC 2 cut(s) 83, 498
AlwI GGATC 1 cut(s) 725
AoxI GGCC 6 cut(s) 152, 206, 338, 344, 523, 636
ApeKI GCWGC 3 cut(s) 239, 563, 667
ApoI RAATTY 3 cut(s) 102, 193, 605
Asp700I GAANNNNTTC 2 cut(s) 132, 901
Asp718I GGTACC 1 cut(s) 17
AspA2I CCTAGG 1 cut(s) 341
AspS9I GGNCC 2 cut(s) 152, 311
AsuHPI GGTGA 1 cut(s) 124
AsuII TTCGAA 1 cut(s) 126
AvaII GGWCC 1 cut(s) 311
AvrII CCTAGG 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 67
BalI TGGCCA 1 cut(s) 208
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 553
BarI GAAGNNNNNNTAC 2 cut(s) 741, 773
Bbv12I GWGCWC 2 cut(s) 553, 681
BbvI GCAGC 3 cut(s) 251, 550, 679
BccI CCATC 1 cut(s) 410
BceAI ACGGC 1 cut(s) 764
BciT130I CCWGG 2 cut(s) 495, 735
BclI TGATCA 1 cut(s) 801
BcoDI GTCTC 2 cut(s) 83, 498
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 3 cut(s) 93, 296, 564
BfuAI ACCTGC 1 cut(s) 233
BisI GCNGC 4 cut(s) 155, 240, 564, 668
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 4 cut(s) 156, 241, 565, 669
Bme1390I CCNGG 2 cut(s) 495, 735
Bme18I GGWCC 1 cut(s) 311
BmeRI GACNNNNNGTC 1 cut(s) 619
BmgBI CACGTC 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 152, 311
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 495, 735
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 4 cut(s) 175, 274, 434, 876
BmuI ACTGGG 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 341, 780
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 2 cut(s) 122, 313
Bse21I CCTNAGG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 2 cut(s) 495, 735
BseDI CCNNGG 2 cut(s) 341, 780
BseGI GGATG 4 cut(s) 190, 367, 425, 867
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 3 cut(s) 81, 566, 821
BseNI ACTGG 2 cut(s) 122, 313
BseRI GAGGAG 2 cut(s) 55, 758
BseXI GCAGC 3 cut(s) 251, 550, 679
BshFI GGCC 6 cut(s) 154, 208, 340, 346, 525, 638
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 2 cut(s) 553, 681
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 2 cut(s) 83, 498
BsnI GGCC 6 cut(s) 154, 208, 340, 346, 525, 638
Bso31I GGTCTC 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 553, 681
Bsp143I GATC 4 cut(s) 289, 708, 730, 801
BspACI CCGC 2 cut(s) 86, 155
BspANI GGCC 6 cut(s) 154, 208, 340, 346, 525, 638
BspCNI CTCAG 3 cut(s) 80, 565, 822
BspLI GGNNCC 1 cut(s) 19
BspMAI CTGCAG 2 cut(s) 300, 568
BspMI ACCTGC 1 cut(s) 233
BspPI GGATC 1 cut(s) 725
BspT104I TTCGAA 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 498
BsrBI CCGCTC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 122, 313
BssECI CCNNGG 2 cut(s) 341, 780
BssMI GATC 4 cut(s) 289, 708, 730, 801
BssNAI GTATAC 1 cut(s) 517
BssT1I CCWWGG 1 cut(s) 341
Bst1107I GTATAC 1 cut(s) 517
Bst2UI CCWGG 2 cut(s) 495, 735
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 284
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 703, 766
BstDEI CTNAG 4 cut(s) 67, 320, 552, 830
BstDSI CCRYGG 1 cut(s) 780
BstF5I GGATG 4 cut(s) 190, 367, 425, 867
BstKTI GATC 4 cut(s) 292, 711, 733, 804
BstMAI GTCTC 2 cut(s) 83, 498
BstMBI GATC 4 cut(s) 289, 708, 730, 801
BstMWI GCNNNNNNNGC 4 cut(s) 32, 284, 667, 676
BstNI CCWGG 2 cut(s) 495, 735
BstSCI CCNGG 2 cut(s) 493, 733
BstSFI CTRYAG 3 cut(s) 93, 296, 564
BstV1I GCAGC 3 cut(s) 251, 550, 679
BstX2I RGATCY 1 cut(s) 730
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 1 cut(s) 730
BstZ17I GTATAC 1 cut(s) 517
Bsu36I CCTNAGG 1 cut(s) 67
BsuRI GGCC 6 cut(s) 154, 208, 340, 346, 525, 638
BtgI CCRYGG 1 cut(s) 780
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 4 cut(s) 190, 367, 425, 867
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 2 cut(s) 306, 745
BveI ACCTGC 1 cut(s) 233
Cac8I GCNNGC 2 cut(s) 703, 766
Cfr13I GGNCC 2 cut(s) 152, 311
Csp6I GTAC 3 cut(s) 18, 169, 304
CspCI CAANNNNNGTGG 2 cut(s) 336, 371
CviAII CATG 2 cut(s) 383, 706
CviQI GTAC 3 cut(s) 18, 169, 304
DdeI CTNAG 4 cut(s) 67, 320, 552, 830
DpnI GATC 4 cut(s) 291, 710, 732, 803
DpnII GATC 4 cut(s) 289, 708, 730, 801
DriI GACNNNNNGTC 1 cut(s) 619
EaeI YGGCCR 2 cut(s) 206, 636
Eam1104I CTCTTC 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 551
Eco130I CCWWGG 1 cut(s) 341
Eco24I GRGCYC 1 cut(s) 553
Eco31I GGTCTC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 551
Eco81I CCTNAGG 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 551
EcoRII CCWGG 2 cut(s) 493, 733
EcoT14I CCWWGG 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 341
FaeI CATG 2 cut(s) 386, 709
FatI CATG 2 cut(s) 382, 705
FauNDI CATATG 1 cut(s) 583
FbaI TGATCA 1 cut(s) 801
FblI GTMKAC 2 cut(s) 60, 516
Fnu4HI GCNGC 4 cut(s) 155, 240, 564, 668
FokI GGATG 4 cut(s) 197, 374, 412, 854
FriOI GRGCYC 1 cut(s) 553
Fsp4HI GCNGC 4 cut(s) 155, 240, 564, 668
FspBI CTAG 1 cut(s) 342
GluI GCNGC 4 cut(s) 155, 240, 564, 668
HaeIII GGCC 6 cut(s) 154, 208, 340, 346, 525, 638
Hin1II CATG 2 cut(s) 386, 709
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 2 cut(s) 409, 464
HinfI GANTC 4 cut(s) 62, 133, 393, 440
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 4 cut(s) 61, 115, 306, 517
Hpy188I TCNGA 3 cut(s) 108, 555, 831
Hpy188III TCNNGA 3 cut(s) 314, 503, 712
Hpy8I GTNNAC 4 cut(s) 61, 115, 306, 517
Hpy99I CGWCG 3 cut(s) 56, 59, 62
HpyAV CCTTC 4 cut(s) 103, 122, 787, 817
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 5 cut(s) 278, 298, 566, 581, 886
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 284, 667, 676
HpyF3I CTNAG 4 cut(s) 67, 320, 552, 830
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 2 cut(s) 386, 709
KpnI GGTACC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 801
Kzo9I GATC 4 cut(s) 289, 708, 730, 801
LmnI GCTCC 2 cut(s) 325, 773
Lsp1109I GCAGC 3 cut(s) 251, 550, 679
LweI GCATC 4 cut(s) 175, 274, 434, 876
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 3 cut(s) 378, 478, 485
MalI GATC 4 cut(s) 291, 710, 732, 803
MbiI CCGCTC 1 cut(s) 157
MboI GATC 4 cut(s) 289, 708, 730, 801
MboII GAAGA 2 cut(s) 36, 727
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 2 cut(s) 553, 681
MlsI TGGCCA 1 cut(s) 208
MluCI AATT 6 cut(s) 102, 193, 223, 232, 605, 812
MluNI TGGCCA 1 cut(s) 208
MlyI GAGTC 2 cut(s) 56, 449
MmeI TCCRAC 2 cut(s) 162, 370
MnlI CCTC 8 cut(s) 31, 76, 182, 352, 379, 736, 739, 813
Mox20I TGGCCA 1 cut(s) 208
MroXI GAANNNNTTC 2 cut(s) 132, 901
MscI TGGCCA 1 cut(s) 208
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 632
Msp20I TGGCCA 1 cut(s) 208
MspA1I CMGCKG 2 cut(s) 458, 656
MspR9I CCNGG 2 cut(s) 495, 735
MvaI CCWGG 2 cut(s) 495, 735
MwoI GCNNNNNNNGC 4 cut(s) 32, 284, 667, 676
NdeI CATATG 1 cut(s) 583
NdeII GATC 4 cut(s) 289, 708, 730, 801
NlaIII CATG 2 cut(s) 386, 709
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 485
NspV TTCGAA 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 2 cut(s) 132, 901
PfeI GAWTC 2 cut(s) 133, 393
PkrI GCNGC 4 cut(s) 156, 241, 565, 669
PleI GAGTC 2 cut(s) 56, 448
PpsI GAGTC 2 cut(s) 56, 448
Psp124BI GAGCTC 1 cut(s) 553
Psp6I CCWGG 2 cut(s) 493, 733
PspGI CCWGG 2 cut(s) 493, 733
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 152, 311
PstI CTGCAG 2 cut(s) 300, 568
PsuI RGATCY 1 cut(s) 730
PvuII CAGCTG 2 cut(s) 458, 656
RsaI GTAC 3 cut(s) 19, 170, 305
RsaNI GTAC 3 cut(s) 18, 169, 304
RseI CAYNNNNRTG 1 cut(s) 632
SacI GAGCTC 1 cut(s) 553
SalI GTCGAC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 4 cut(s) 155, 240, 564, 668
Sau3AI GATC 4 cut(s) 289, 708, 730, 801
Sau96I GGNCC 2 cut(s) 152, 311
SchI GAGTC 2 cut(s) 56, 449
ScrFI CCNGG 2 cut(s) 495, 735
SduI GDGCHC 2 cut(s) 553, 681
SfaNI GCATC 4 cut(s) 175, 274, 434, 876
SfcI CTRYAG 3 cut(s) 93, 296, 564
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 6 cut(s) 102, 193, 223, 232, 605, 812
SsiI CCGC 2 cut(s) 86, 155
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 1 cut(s) 553
StyD4I CCNGG 2 cut(s) 493, 733
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 54
TaqI TCGA 5 cut(s) 60, 126, 396, 502, 711
TasI AATT 6 cut(s) 102, 193, 223, 232, 605, 812
TatI WGTACW 1 cut(s) 303
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 2 cut(s) 133, 393
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 2 cut(s) 313, 745
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 3 cut(s) 239, 563, 667
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 1 cut(s) 806
TspRI CASTG 2 cut(s) 313, 745
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 3 cut(s) 102, 193, 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 778
XmaJI CCTAGG 1 cut(s) 341
XmiI GTMKAC 2 cut(s) 60, 516
XmnI GAANNNNTTC 2 cut(s) 132, 901
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.