MD15G1294900.v1.1

UPF0553 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016736
Physical Location & Seq
Reverse (-)
27580117 .. 27582991
2875 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1294900.v1.1.491

Sequence Viewer

Length: 918 bp
ATGGACGATGTTAGGGCAAGCTCTGCTTGGGTCGCAAGCCATTCTTCTCACGTCCTCGTCGATTCTTCAGGGATTGAGAAAGTGGCGGAGACGATAGATACAATTCCGAAGGTGGAATGGGATTTCGAAGGGATACACTATTTCGACAATGGACCTCTCACCGTTCAGTACCTCTTTGTGTTGGACGCTTTGAATTTCTGCTTTTGGCCTGATAAGGACTTAAATTACGACAATTTGGCTGCCGGTCTGAAGGCAGCAATACAAAATGACAAATCTGTGTTTGATGCTGATCGTCTGCAGAAATACACCGGTCCTGAACTGCGGGAGCTGTTGAAATGGCCAAGGTCACTACCTTTGGAGGACGAGAGAGTTCGTTTGTTACAAGAGGTTGGGTTTGAACTGGAGAGAAGCTTTGATGGCAAAGCATCTAATCTTGTGGAGTCATGTGGAAAGTCAGCTGTTAAGCTTGTAGCTCTGGTTACTCGTCACTTTCCTGGTTTCCGAGACCACTCAGTATACAAAGGCCACCAAGTATTTTTGTATAAAAGAGCTCAGATATTTGCAGCAGATTTATGGGGTGCATTTGGAGGCCAAGGATATGGAGAATTTTATGACATTGGCTCAATCACTATTATGGCGGACTATATTGTTCCAGCCGTGCTTCAACAGCTGGGTGTGCTGAAGTATAGTGCAACCCTTGCCAGCGCTATCGAGGCTAATAGTCAAATAGTTGCAGGCAGTGAGGAGGAAGTTGAACTGCGAGCTTGCTCCATATATGCTGTCGAGAAAATGAAGGAGTTGATCAGTATGAAATCAGGGAAGCAGGTGCTGAGTATTGAGTTAGACCTTTGGCTTTGGTCTTTTGGCATTCAGTGTCCTGCTCTGCAACACCATCGAACCCTCTCTATATATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Q_salvage

Protein Analysis

306

Amino Acids

34.29

Weight (kDa)

5.15

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Q_salvage PF10343 46 - 305 9.1e-89 Queuosine salvage protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016736)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17400 FvH4_1g17400
malus_domestica MD00G1015500.v1.1 MD15G1294900.v1.1
prunus_persica Prupe.6G222900_v2.0.a1
pyrus_communis pycom15g25770
rosa_chinensis RchiOBHm_Chr2g0107591
rosa_laevigata RLG00000017593
rosa_multiflora Rmu_sc0000800.1_g000030
rosa_roxburghii Rroxscaffold_2G00136170
rosa_rugosa Rorug02G0145200
rosa_samantha Rh2BG207700 Rh2DG202600
rosa_wichuraiana Rw2G015460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 814
Acc36I ACCTGC 1 cut(s) 814
AccI GTMKAC 1 cut(s) 516
AciI CCGC 3 cut(s) 86, 322, 638
AcoI YGGCCR 1 cut(s) 338
AcsI RAATTY 2 cut(s) 193, 605
AcuI CTGAAG 3 cut(s) 51, 269, 701
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 706
AgeI ACCGGT 1 cut(s) 308
AgsI TTSAA 5 cut(s) 193, 334, 398, 665, 755
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 9 cut(s) 21, 328, 411, 458, 466, 473, 551, 670, 764
AluI AGCT 9 cut(s) 21, 328, 411, 458, 466, 473, 551, 670, 764
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 2 cut(s) 83, 498
AlwNI CAGNNNCTG 1 cut(s) 829
Aor51HI AGCGCT 1 cut(s) 706
AoxI GGCC 4 cut(s) 206, 338, 523, 589
ApeKI GCWGC 3 cut(s) 239, 254, 563
ApoI RAATTY 2 cut(s) 193, 605
AsiGI ACCGGT 1 cut(s) 308
AspLEI GCGC 1 cut(s) 707
AspS9I GGNCC 2 cut(s) 152, 311
AsuHPI GGTGA 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 126
AvaII GGWCC 2 cut(s) 152, 311
BalI TGGCCA 1 cut(s) 340
BanII GRGCYC 1 cut(s) 553
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 3 cut(s) 226, 266, 575
BccI CCATC 2 cut(s) 410, 900
BceAI ACGGC 1 cut(s) 641
BcgI CGANNNNNNTGC 2 cut(s) 875, 909
BciT130I CCWGG 1 cut(s) 495
BciVI GTATCC 1 cut(s) 126
BclI TGATCA 1 cut(s) 801
BcoDI GTCTC 2 cut(s) 83, 498
BfmI CTRYAG 1 cut(s) 296
BfoI RGCGCY 1 cut(s) 708
BfuAI ACCTGC 1 cut(s) 814
BfuI GTATCC 1 cut(s) 126
BisI GCNGC 3 cut(s) 240, 255, 564
BlsI GCNGC 3 cut(s) 241, 256, 565
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 2 cut(s) 152, 311
BmgBI CACGTC 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 152, 311
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 2 cut(s) 274, 434
BpmI CTGGAG 1 cut(s) 422
Bpu14I TTCGAA 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 341, 592
BsaWI WCCGGW 1 cut(s) 308
Bse118I RCCGGY 2 cut(s) 242, 308
Bse1I ACTGG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 2 cut(s) 341, 592
BseJI GATNNNNATC 1 cut(s) 288
BseMII CTCAG 3 cut(s) 525, 566, 821
BseNI ACTGG 1 cut(s) 405
BseRI GAGGAG 1 cut(s) 758
BseXI GCAGC 3 cut(s) 226, 266, 575
BseYI CCCAGC 1 cut(s) 670
BshFI GGCC 4 cut(s) 208, 340, 525, 591
BshTI ACCGGT 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 553
BsiSI CCGG 2 cut(s) 243, 309
BsmAI GTCTC 2 cut(s) 83, 498
BsmBI CGTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 867
BsnI GGCC 4 cut(s) 208, 340, 525, 591
Bso31I GGTCTC 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 2 cut(s) 289, 801
BspACI CCGC 3 cut(s) 86, 322, 638
BspANI GGCC 4 cut(s) 208, 340, 525, 591
BspCNI CTCAG 3 cut(s) 524, 565, 822
BspMAI CTGCAG 1 cut(s) 300
BspMI ACCTGC 1 cut(s) 814
BspT104I TTCGAA 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 498
BsrFI RCCGGY 2 cut(s) 242, 308
BsrI ACTGG 1 cut(s) 405
BssAI RCCGGY 2 cut(s) 242, 308
BssECI CCNNGG 2 cut(s) 341, 592
BssMI GATC 2 cut(s) 289, 801
BssNAI GTATAC 1 cut(s) 517
BssT1I CCWWGG 2 cut(s) 341, 592
Bst1107I GTATAC 1 cut(s) 517
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 163
BstAPI GCANNNNNTGC 2 cut(s) 23, 698
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 6 cut(s) 19, 37, 703, 736, 762, 766
BstDEI CTNAG 3 cut(s) 511, 552, 830
BstH2I RGCGCY 1 cut(s) 708
BstHHI GCGC 1 cut(s) 707
BstKTI GATC 2 cut(s) 292, 804
BstMAI GTCTC 2 cut(s) 83, 498
BstMBI GATC 2 cut(s) 289, 801
BstMWI GCNNNNNNNGC 7 cut(s) 23, 32, 417, 667, 676, 698, 713
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstSFI CTRYAG 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 226, 266, 575
BstXI CCANNNNNNTGG 1 cut(s) 599
BstZ17I GTATAC 1 cut(s) 517
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 4 cut(s) 208, 340, 525, 591
BtrI CACGTC 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 2 cut(s) 745, 878
BveI ACCTGC 1 cut(s) 814
Cac8I GCNNGC 6 cut(s) 19, 37, 703, 736, 762, 766
CaiI CAGNNNCTG 1 cut(s) 829
CfoI GCGC 1 cut(s) 707
Cfr10I RCCGGY 2 cut(s) 242, 308
Cfr13I GGNCC 2 cut(s) 152, 311
CseI GACGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 169
CspAI ACCGGT 1 cut(s) 308
CviAII CATG 1 cut(s) 444
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 3 cut(s) 511, 552, 830
DpnI GATC 2 cut(s) 291, 803
DpnII GATC 2 cut(s) 289, 801
EaeI YGGCCR 1 cut(s) 338
EciI GGCGGA 2 cut(s) 101, 653
Ecl136II GAGCTC 1 cut(s) 551
Eco130I CCWWGG 2 cut(s) 341, 592
Eco24I GRGCYC 1 cut(s) 553
Eco31I GGTCTC 1 cut(s) 498
Eco47I GGWCC 2 cut(s) 152, 311
Eco47III AGCGCT 1 cut(s) 706
Eco53kI GAGCTC 1 cut(s) 551
Eco57I CTGAAG 3 cut(s) 51, 269, 701
EcoICRI GAGCTC 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 2 cut(s) 341, 592
EcoT38I GRGCYC 1 cut(s) 553
ErhI CCWWGG 2 cut(s) 341, 592
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 1 cut(s) 447
FalI AAGNNNNNCTT 4 cut(s) 10, 42, 28, 60
FatI CATG 1 cut(s) 443
FauI CCCGC 1 cut(s) 315
FbaI TGATCA 1 cut(s) 801
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 3 cut(s) 240, 255, 564
FriOI GRGCYC 1 cut(s) 553
Fsp4HI GCNGC 3 cut(s) 240, 255, 564
GlaI GCGC 1 cut(s) 706
GluI GCNGC 3 cut(s) 240, 255, 564
GsaI CCCAGC 1 cut(s) 674
GsuI CTGGAG 1 cut(s) 422
HaeII RGCGCY 1 cut(s) 708
HaeIII GGCC 4 cut(s) 208, 340, 525, 591
HapII CCGG 2 cut(s) 243, 309
HgaI GACGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 707
Hin1II CATG 1 cut(s) 447
Hin6I GCGC 1 cut(s) 705
HinP1I GCGC 1 cut(s) 705
HindIII AAGCTT 2 cut(s) 409, 464
HinfI GANTC 2 cut(s) 62, 440
HpaII CCGG 2 cut(s) 243, 309
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 4 cut(s) 108, 249, 503, 555
Hpy188III TCNNGA 2 cut(s) 314, 784
Hpy8I GTNNAC 1 cut(s) 517
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 103, 122, 244, 787
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 6 cut(s) 298, 563, 581, 692, 734, 886
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 32, 417, 667, 676, 698, 713
HpyF3I CTNAG 3 cut(s) 511, 552, 830
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 1 cut(s) 447
HspAI GCGC 1 cut(s) 705
Ksp22I TGATCA 1 cut(s) 801
Kzo9I GATC 2 cut(s) 289, 801
LmnI GCTCC 2 cut(s) 325, 773
Lsp1109I GCAGC 3 cut(s) 226, 266, 575
LweI GCATC 2 cut(s) 274, 434
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 4 cut(s) 345, 378, 478, 485
MalI GATC 2 cut(s) 291, 803
MboI GATC 2 cut(s) 289, 801
MboII GAAGA 2 cut(s) 36, 57
MhlI GDGCHC 1 cut(s) 553
MlsI TGGCCA 1 cut(s) 340
MluCI AATT 5 cut(s) 102, 193, 223, 232, 605
MluNI TGGCCA 1 cut(s) 340
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 162
Mox20I TGGCCA 1 cut(s) 340
MscI TGGCCA 1 cut(s) 340
MseI TTAA 2 cut(s) 221, 462
MslI CAYNNNNRTG 1 cut(s) 632
Msp20I TGGCCA 1 cut(s) 340
MspA1I CMGCKG 2 cut(s) 458, 670
MspI CCGG 2 cut(s) 243, 309
MspR9I CCNGG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 867
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 7 cut(s) 23, 32, 417, 667, 676, 698, 713
NdeII GATC 2 cut(s) 289, 801
NlaIII CATG 1 cut(s) 447
NmuCI GTSAC 2 cut(s) 345, 485
NspV TTCGAA 1 cut(s) 126
PaqCI CACCTGC 1 cut(s) 814
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 867
PfeI GAWTC 1 cut(s) 62
PinAI ACCGGT 1 cut(s) 308
PkrI GCNGC 3 cut(s) 241, 256, 565
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Psp124BI GAGCTC 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 670
PspGI CCWGG 1 cut(s) 493
PspPI GGNCC 2 cut(s) 152, 311
PstI CTGCAG 1 cut(s) 300
PstNI CAGNNNCTG 1 cut(s) 829
PvuII CAGCTG 2 cut(s) 458, 670
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 632
SacI GAGCTC 1 cut(s) 553
SaqAI TTAA 2 cut(s) 221, 462
SatI GCNGC 3 cut(s) 240, 255, 564
Sau3AI GATC 2 cut(s) 289, 801
Sau96I GGNCC 2 cut(s) 152, 311
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 1 cut(s) 553
SfaNI GCATC 2 cut(s) 274, 434
SfcI CTRYAG 1 cut(s) 296
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 2 cut(s) 152, 311
SmiMI CAYNNNNRTG 1 cut(s) 632
Sse9I AATT 5 cut(s) 102, 193, 223, 232, 605
SsiI CCGC 3 cut(s) 86, 322, 638
SstI GAGCTC 1 cut(s) 553
StyD4I CCNGG 1 cut(s) 493
StyI CCWWGG 2 cut(s) 341, 592
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 54
TaqI TCGA 6 cut(s) 60, 126, 144, 711, 783, 895
TasI AATT 5 cut(s) 102, 193, 223, 232, 605
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 221, 462
Tru9I TTAA 2 cut(s) 221, 462
TscAI CASTG 2 cut(s) 745, 878
TseFI GTSAC 2 cut(s) 345, 485
TseI GCWGC 3 cut(s) 239, 254, 563
Tsp45I GTSAC 2 cut(s) 345, 485
TspDTI ATGAA 2 cut(s) 806, 824
TspRI CASTG 2 cut(s) 745, 878
VpaK11BI GGWCC 2 cut(s) 152, 311
XapI RAATTY 2 cut(s) 193, 605
XmiI GTMKAC 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.