Rorug02G0145200

UPF0553 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016736
Physical Location & Seq
Reverse (-)
12743310 .. 12743882
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0145200.1

Sequence Viewer

Length: 573 bp
ATGGCCGTCACCGCTCAAACTAGAAGACCCGCCCATACACCTTATTCCGCTCCCCGCTCTCGCCAAGCCCCAACCGTTAACAAATCGCCTCATTGGCTCGACTTCCTCATTCTCTCTGCCGTCTTGCTCTTTTTCCTTGAGCTGATCATCGTTGTTGGGCGCATAGCTATTGACAATAGGGTCGAGAAGGCGATTCAGAAGCACGCGGCAGACGGGCTCGCAAGGGCGGACTACGCCGCGGCTAGCTGGGGTGCTACCGTTGTGGACCATTCTGAGCCTCGTTATGAGAGGGACTGGCCATGGCTTGGTTGGTGGAGTACGTGGTGGAATGGGGTTCACCATAAAGCCATTCATATGTTGAGCCCTAGTTTCGGAGAGCCAGGCCGGTGTTTTCCCTTGAAAGGGAGGAGTGGCTTTGTTGTGGTCAAGCTAAGGGAGCCTATTGTGCCGGAGGCTATTACTATTGAACATGTTTTGGATAGTGTTGTTGATGACAGGTCCGATGCTCCCAAGGATTGCCGTGTCATTGCTTGGTTGCAACATGATCGGTATGATGGCCGGCAAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Q_salvage

Protein Analysis

190

Amino Acids

21.62

Weight (kDa)

7.14

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sad1_UNC PF07738 113 - 183 5.3e-14 Sad1 / UNC-like C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016736)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17400 FvH4_1g17400
malus_domestica MD00G1015500.v1.1 MD15G1294900.v1.1
prunus_persica Prupe.6G222900_v2.0.a1
pyrus_communis pycom15g25770
rosa_chinensis RchiOBHm_Chr2g0107591
rosa_laevigata RLG00000017593
rosa_multiflora Rmu_sc0000800.1_g000030
rosa_roxburghii Rroxscaffold_2G00136170
rosa_rugosa Rorug02G0145200
rosa_samantha Rh2BG207700 Rh2DG202600
rosa_wichuraiana Rw2G015460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 305
AccBSI CCGCTC 3 cut(s) 14, 50, 57
AccII CGCG 2 cut(s) 206, 239
AciI CCGC 8 cut(s) 12, 30, 48, 55, 206, 227, 237, 239
AcoI YGGCCR 3 cut(s) 3, 296, 556
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 4 cut(s) 305, 371, 401, 402
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 2 cut(s) 400, 467
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 4 cut(s) 142, 167, 246, 430
AluI AGCT 4 cut(s) 142, 167, 246, 430
AoxI GGCC 4 cut(s) 3, 296, 382, 556
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 265, 498
AsuHPI GGTGA 1 cut(s) 329
AsuNHI GCTAGC 1 cut(s) 242
AvaII GGWCC 2 cut(s) 265, 498
BalI TGGCCA 1 cut(s) 298
BanII GRGCYC 2 cut(s) 219, 365
BbsI GAAGAC 1 cut(s) 31
BccI CCATC 1 cut(s) 548
BceAI ACGGC 2 cut(s) 104, 504
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BciT130I CCWGG 1 cut(s) 381
BclI TGATCA 1 cut(s) 144
BfaI CTAG 3 cut(s) 21, 243, 366
BglI GCCNNNNNGGC 1 cut(s) 94
BisI GCNGC 3 cut(s) 207, 237, 240
BlsI GCNGC 3 cut(s) 208, 238, 241
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 2 cut(s) 265, 498
BmgT120I GGNCC 2 cut(s) 265, 498
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 493
BmtI GCTAGC 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 158
BsaAI YACGTR 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 237, 299, 510
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 371, 401, 402
Bse118I RCCGGY 2 cut(s) 384, 558
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 525
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 3 cut(s) 237, 299, 510
BseLI CCNNNNNNNGG 4 cut(s) 305, 371, 401, 402
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 421
BseYI CCCAGC 1 cut(s) 246
Bsh1236I CGCG 2 cut(s) 206, 239
BshFI GGCC 4 cut(s) 5, 298, 384, 558
BsiSI CCGG 3 cut(s) 385, 449, 559
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 4 cut(s) 305, 371, 401, 402
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 4 cut(s) 5, 298, 384, 558
Bsp1286I GDGCHC 2 cut(s) 219, 365
Bsp143I GATC 2 cut(s) 144, 544
Bsp19I CCATGG 1 cut(s) 299
BspACI CCGC 8 cut(s) 12, 30, 48, 55, 206, 227, 237, 239
BspANI GGCC 4 cut(s) 5, 298, 384, 558
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 2 cut(s) 206, 239
BspLI GGNNCC 1 cut(s) 438
BspOI GCTAGC 1 cut(s) 246
BsrBI CCGCTC 3 cut(s) 14, 50, 57
BsrDI GCAATG 1 cut(s) 525
BsrFI RCCGGY 2 cut(s) 384, 558
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 2 cut(s) 384, 558
BssECI CCNNGG 3 cut(s) 237, 299, 510
BssMI GATC 2 cut(s) 144, 544
BssT1I CCWWGG 2 cut(s) 299, 510
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 2 cut(s) 76, 259
BstBAI YACGTR 1 cut(s) 321
BstC8I GCNNGC 4 cut(s) 204, 219, 244, 560
BstDEI CTNAG 2 cut(s) 273, 431
BstDSI CCRYGG 2 cut(s) 237, 299
BstFNI CGCG 2 cut(s) 206, 239
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 2 cut(s) 147, 547
BstMBI GATC 2 cut(s) 144, 544
BstMWI GCNNNNNNNGC 5 cut(s) 11, 94, 233, 436, 445
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 379
BstUI CGCG 2 cut(s) 206, 239
BstV2I GAAGAC 1 cut(s) 31
BsuRI GGCC 4 cut(s) 5, 298, 384, 558
BtgI CCRYGG 2 cut(s) 237, 299
Cac8I GCNNGC 4 cut(s) 204, 219, 244, 560
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 2 cut(s) 384, 558
Cfr13I GGNCC 2 cut(s) 265, 498
Cfr42I CCGCGG 1 cut(s) 240
Csp6I GTAC 1 cut(s) 318
CviAII CATG 3 cut(s) 300, 470, 542
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 2 cut(s) 273, 431
DpnI GATC 2 cut(s) 146, 546
DpnII GATC 2 cut(s) 144, 544
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 3 cut(s) 3, 296, 556
EciI GGCGGA 1 cut(s) 242
Eco130I CCWWGG 2 cut(s) 299, 510
Eco24I GRGCYC 2 cut(s) 219, 365
Eco47I GGWCC 2 cut(s) 265, 498
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 2 cut(s) 299, 510
EcoT38I GRGCYC 2 cut(s) 219, 365
ErhI CCWWGG 2 cut(s) 299, 510
FaeI CATG 3 cut(s) 303, 473, 545
FaqI GGGAC 1 cut(s) 305
FatI CATG 3 cut(s) 299, 469, 541
FauI CCCGC 2 cut(s) 37, 62
FauNDI CATATG 1 cut(s) 354
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 207, 237, 240
FriOI GRGCYC 2 cut(s) 219, 365
Fsp4HI GCNGC 3 cut(s) 207, 237, 240
FspBI CTAG 3 cut(s) 21, 243, 366
GlaI GCGC 1 cut(s) 161
GluI GCNGC 3 cut(s) 207, 237, 240
GsaI CCCAGC 1 cut(s) 250
HaeIII GGCC 4 cut(s) 5, 298, 384, 558
HapII CCGG 3 cut(s) 385, 449, 559
HhaI GCGC 1 cut(s) 162
Hin1II CATG 3 cut(s) 303, 473, 545
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 1 cut(s) 193
HpaI GTTAAC 1 cut(s) 79
HpaII CCGG 3 cut(s) 385, 449, 559
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 3 cut(s) 79, 265, 337
Hpy188I TCNGA 4 cut(s) 198, 274, 374, 502
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 3 cut(s) 79, 265, 337
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 76, 259
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 1 cut(s) 538
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 94, 233, 436, 445
HpyF3I CTNAG 2 cut(s) 273, 431
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 3 cut(s) 303, 473, 545
HspAI GCGC 1 cut(s) 160
KroI GCCGGC 1 cut(s) 558
KroNI GCCGGC 1 cut(s) 560
Ksp22I TGATCA 1 cut(s) 144
KspAI GTTAAC 1 cut(s) 79
KspI CCGCGG 1 cut(s) 240
Kzo9I GATC 2 cut(s) 144, 544
LmnI GCTCC 3 cut(s) 55, 436, 511
LpnPI CCDG 7 cut(s) 232, 280, 366, 393, 398, 462, 481
LweI GCATC 1 cut(s) 493
MaeI CTAG 3 cut(s) 21, 243, 366
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 7
MalI GATC 2 cut(s) 146, 546
MbiI CCGCTC 3 cut(s) 14, 50, 57
MboI GATC 2 cut(s) 144, 544
MboII GAAGA 1 cut(s) 36
MhlI GDGCHC 2 cut(s) 219, 365
MlsI TGGCCA 1 cut(s) 298
MluNI TGGCCA 1 cut(s) 298
MnlI CCTC 6 cut(s) 99, 116, 282, 288, 399, 445
Mox20I TGGCCA 1 cut(s) 298
MroNI GCCGGC 1 cut(s) 558
MscI TGGCCA 1 cut(s) 298
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 298
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 3 cut(s) 385, 449, 559
MspR9I CCNGG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 381
MvnI CGCG 2 cut(s) 206, 239
MwoI GCNNNNNNNGC 5 cut(s) 11, 94, 233, 436, 445
NaeI GCCGGC 1 cut(s) 560
NcoI CCATGG 1 cut(s) 299
NdeI CATATG 1 cut(s) 354
NdeII GATC 2 cut(s) 144, 544
NgoMIV GCCGGC 1 cut(s) 558
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 3 cut(s) 303, 473, 545
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 473
PciI ACATGT 1 cut(s) 469
PdiI GCCGGC 1 cut(s) 560
PfeI GAWTC 1 cut(s) 193
PflMI CCANNNNNTGG 1 cut(s) 305
PkrI GCNGC 3 cut(s) 208, 238, 241
Ppu21I YACGTR 1 cut(s) 321
PscI ACATGT 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 246
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 2 cut(s) 265, 498
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
RseI CAYNNNNRTG 1 cut(s) 353
SacII CCGCGG 1 cut(s) 240
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 3 cut(s) 207, 237, 240
Sau3AI GATC 2 cut(s) 144, 544
Sau96I GGNCC 2 cut(s) 265, 498
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 2 cut(s) 219, 365
SetI ASST 7 cut(s) 43, 144, 169, 248, 323, 432, 500
SfaNI GCATC 1 cut(s) 493
Sfr303I CCGCGG 1 cut(s) 240
SgrBI CCGCGG 1 cut(s) 240
SinI GGWCC 2 cut(s) 265, 498
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 8 cut(s) 12, 30, 48, 55, 206, 227, 237, 239
SspMI CTAG 3 cut(s) 21, 243, 366
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 2 cut(s) 299, 510
TaaI ACNGT 2 cut(s) 76, 259
TaiI ACGT 1 cut(s) 323
TaqI TCGA 2 cut(s) 99, 183
TauI GCSGC 3 cut(s) 209, 239, 242
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 341
Van91I CCANNNNNTGG 1 cut(s) 305
VpaK11BI GGWCC 2 cut(s) 265, 498
XceI RCATGY 1 cut(s) 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 306
XspI CTAG 3 cut(s) 21, 243, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.