MD00G1015500.v1.1

UPF0553 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0016736
Physical Location & Seq
Forward (+)
2242042 .. 2245068
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1015500.v1.1.491

Sequence Viewer

Length: 918 bp
ATGGACGACGTTAGGGCAAGCTCTGCTTGGGTCGCAAGCCATTCTTCTCATGTCGTCGTCGACTCTTCAGGGATTGAGAAAGTGGCGGAGAGGATAGATACAATTCCGAAGGTGAAATGGGATTTCGAAGGAATACACTATTTCGACAATGGGCCTCTCACCGTTCAGTATCTCTTTGTGTTGGACGCTTTGAATTTCTGCTTTTGGCCTGATAAGGACTTAAATTATGACAATTTGGCTGCTGGTCTAAAGGAAGCAATACAAAATGACAAATCTGTGTTTGATGCTGATCGTTTGCAGAAATACACCGGTTCTGAACTGCGGGAGCTGTTGAAATGGCCTAGGCCATTACCTTTGGAGGATGAGAGAGTTCGTTTGCTGCATGAGGTTGGGTTTGAGCTTGAGAGAAGCTTTGACGGCAAAGCATCCAACCTTGTGGAGTCCTGTGGAAAGTCAGCGGTTAAGCTTGTTGCTCTTGTTACTCGTCACTTTCCTGGTTTCAGAGACCACTCGGTATACAAAGGCCACCAAGTATTTTTGTATAAAAGAGCTCAGATATTTGCAGCAGATTTATGGGGAGCATTTGGCGGCCAAGGATATGGAGAATTTTATGACATTGGCTCAATCACTATTATGGCGGACTACATTGTTCCAGCCGTGCTTAGACAGCTGGGTGTGCTGAAGTATAGTGCAACCCTTGCCAGCACAATTGAGGCTAATACCCAAATAGTTGCAGGCAGTGAGGAGGAAGTCGAACTGCGAGCATGCTCCATATATGCTGTGGAGAAAATGAAAGAGTTGATCAGTATGAAATCAGGGAAGAAGGTGCTGAGTATTGAGTTAGACCTTTGGCTTTGGTCTTTTGGCATTCAGTGTCCTGCACTGCAACACCATCGCACCCTCTCAATATATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Q_salvage

Protein Analysis

306

Amino Acids

34.46

Weight (kDa)

5.63

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Q_salvage PF10343 46 - 305 8.5e-90 Queuosine salvage protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016736)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17400 FvH4_1g17400
malus_domestica MD00G1015500.v1.1 MD15G1294900.v1.1
prunus_persica Prupe.6G222900_v2.0.a1
pyrus_communis pycom15g25770
rosa_chinensis RchiOBHm_Chr2g0107591
rosa_laevigata RLG00000017593
rosa_multiflora Rmu_sc0000800.1_g000030
rosa_roxburghii Rroxscaffold_2G00136170
rosa_rugosa Rorug02G0145200
rosa_samantha Rh2BG207700 Rh2DG202600
rosa_wichuraiana Rw2G015460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 60, 516
AciI CCGC 5 cut(s) 86, 322, 458, 588, 638
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 2 cut(s) 193, 605
AcuI CTGAAG 2 cut(s) 51, 701
AgeI ACCGGT 1 cut(s) 308
AgsI TTSAA 2 cut(s) 193, 334
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 7 cut(s) 21, 328, 400, 411, 466, 551, 670
AluI AGCT 7 cut(s) 21, 328, 400, 411, 466, 551, 670
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 1 cut(s) 498
AoxI GGCC 6 cut(s) 152, 206, 338, 344, 523, 589
ApeKI GCWGC 3 cut(s) 239, 379, 563
ApoI RAATTY 2 cut(s) 193, 605
AsiGI ACCGGT 1 cut(s) 308
AspA2I CCTAGG 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 124, 151
AsuII TTCGAA 1 cut(s) 126
AvrII CCTAGG 1 cut(s) 341
BanII GRGCYC 1 cut(s) 553
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 3 cut(s) 226, 366, 575
BccI CCATC 1 cut(s) 900
BceAI ACGGC 2 cut(s) 433, 641
BcgI CGANNNNNNTGC 2 cut(s) 875, 909
BciT130I CCWGG 1 cut(s) 495
BclI TGATCA 1 cut(s) 801
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 1 cut(s) 342
BisI GCNGC 4 cut(s) 240, 380, 564, 589
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 4 cut(s) 241, 381, 565, 590
Bme1390I CCNGG 1 cut(s) 495
BmgT120I GGNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 2 cut(s) 274, 434
Bpu14I TTCGAA 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 341, 592
BsaWI WCCGGW 1 cut(s) 308
Bse118I RCCGGY 1 cut(s) 308
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 2 cut(s) 341, 592
BseGI GGATG 2 cut(s) 367, 425
BseJI GATNNNNATC 1 cut(s) 288
BseMII CTCAG 2 cut(s) 566, 821
BseRI GAGGAG 1 cut(s) 758
BseXI GCAGC 3 cut(s) 226, 366, 575
BseYI CCCAGC 1 cut(s) 670
BsgI GTGCAG 1 cut(s) 864
BshFI GGCC 6 cut(s) 154, 208, 340, 346, 525, 591
BshTI ACCGGT 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 553
BsiSI CCGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 498
BsmI GAATGC 1 cut(s) 867
BsnI GGCC 6 cut(s) 154, 208, 340, 346, 525, 591
Bso31I GGTCTC 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 2 cut(s) 289, 801
BspACI CCGC 5 cut(s) 86, 322, 458, 588, 638
BspANI GGCC 6 cut(s) 154, 208, 340, 346, 525, 591
BspCNI CTCAG 2 cut(s) 565, 822
BspT104I TTCGAA 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 308
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 341, 592
BssMI GATC 2 cut(s) 289, 801
BssNAI GTATAC 1 cut(s) 517
BssT1I CCWWGG 2 cut(s) 341, 592
Bst1107I GTATAC 1 cut(s) 517
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 70
BstAPI GCANNNNNTGC 2 cut(s) 23, 698
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 6 cut(s) 19, 37, 703, 736, 762, 766
BstDEI CTNAG 3 cut(s) 552, 662, 830
BstF5I GGATG 2 cut(s) 367, 425
BstKTI GATC 2 cut(s) 292, 804
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 2 cut(s) 289, 801
BstMWI GCNNNNNNNGC 6 cut(s) 23, 32, 417, 667, 676, 698
BstNI CCWGG 1 cut(s) 495
BstNSI RCATGY 1 cut(s) 768
BstSCI CCNGG 1 cut(s) 493
BstV1I GCAGC 3 cut(s) 226, 366, 575
BstXI CCANNNNNNTGG 2 cut(s) 436, 599
BstZ17I GTATAC 1 cut(s) 517
BsuRI GGCC 6 cut(s) 154, 208, 340, 346, 525, 591
BtgZI GCGATG 1 cut(s) 878
BtsCI GGATG 2 cut(s) 367, 425
BtsI GCAGTG 2 cut(s) 745, 881
BtsIMutI CAGTG 3 cut(s) 745, 878, 881
Cac8I GCNNGC 6 cut(s) 19, 37, 703, 736, 762, 766
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 1 cut(s) 194
CspAI ACCGGT 1 cut(s) 308
CviAII CATG 3 cut(s) 50, 383, 765
DdeI CTNAG 3 cut(s) 552, 662, 830
DpnI GATC 2 cut(s) 291, 803
DpnII GATC 2 cut(s) 289, 801
EaeI YGGCCR 1 cut(s) 589
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
EciI GGCGGA 2 cut(s) 101, 653
Ecl136II GAGCTC 1 cut(s) 551
Eco130I CCWWGG 2 cut(s) 341, 592
Eco24I GRGCYC 1 cut(s) 553
Eco31I GGTCTC 1 cut(s) 498
Eco53kI GAGCTC 1 cut(s) 551
Eco57I CTGAAG 2 cut(s) 51, 701
EcoICRI GAGCTC 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 2 cut(s) 341, 592
EcoT38I GRGCYC 1 cut(s) 553
ErhI CCWWGG 2 cut(s) 341, 592
FaeI CATG 3 cut(s) 53, 386, 768
FalI AAGNNNNNCTT 4 cut(s) 10, 42, 28, 60
FatI CATG 3 cut(s) 49, 382, 764
FauI CCCGC 1 cut(s) 315
FbaI TGATCA 1 cut(s) 801
FblI GTMKAC 2 cut(s) 60, 516
Fnu4HI GCNGC 4 cut(s) 240, 380, 564, 589
FokI GGATG 2 cut(s) 374, 412
FriOI GRGCYC 1 cut(s) 553
Fsp4HI GCNGC 4 cut(s) 240, 380, 564, 589
FspBI CTAG 1 cut(s) 342
GluI GCNGC 4 cut(s) 240, 380, 564, 589
GsaI CCCAGC 1 cut(s) 674
HaeIII GGCC 6 cut(s) 154, 208, 340, 346, 525, 591
HapII CCGG 1 cut(s) 309
HgaI GACGC 1 cut(s) 194
Hin1II CATG 3 cut(s) 53, 386, 768
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 2 cut(s) 409, 464
HinfI GANTC 2 cut(s) 62, 440
HpaII CCGG 1 cut(s) 309
HphI GGTGA 2 cut(s) 124, 151
Hpy166II GTNNAC 2 cut(s) 61, 517
Hpy188I TCNGA 4 cut(s) 108, 316, 503, 555
Hpy8I GTNNAC 2 cut(s) 61, 517
Hpy99I CGWCG 3 cut(s) 11, 59, 62
HpyAV CCTTC 3 cut(s) 103, 122, 817
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 7 cut(s) 298, 382, 563, 692, 734, 881, 886
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 32, 417, 667, 676, 698
HpyF3I CTNAG 3 cut(s) 552, 662, 830
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 3 cut(s) 53, 386, 768
Ksp22I TGATCA 1 cut(s) 801
Kzo9I GATC 2 cut(s) 289, 801
LmnI GCTCC 3 cut(s) 325, 578, 773
Lsp1109I GCAGC 3 cut(s) 226, 366, 575
LweI GCATC 2 cut(s) 274, 434
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 478, 485
MalI GATC 2 cut(s) 291, 803
MboI GATC 2 cut(s) 289, 801
MboII GAAGA 3 cut(s) 36, 57, 832
MfeI CAATTG 1 cut(s) 708
MhlI GDGCHC 1 cut(s) 553
MluCI AATT 6 cut(s) 102, 193, 223, 232, 605, 708
MlyI GAGTC 2 cut(s) 56, 449
MmeI TCCRAC 2 cut(s) 162, 453
MnlI CCTC 8 cut(s) 84, 165, 352, 379, 706, 736, 739, 911
MseI TTAA 2 cut(s) 221, 462
MslI CAYNNNNRTG 1 cut(s) 632
MspA1I CMGCKG 2 cut(s) 458, 670
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 495
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 1 cut(s) 867
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 6 cut(s) 23, 32, 417, 667, 676, 698
NdeII GATC 2 cut(s) 289, 801
NlaIII CATG 3 cut(s) 53, 386, 768
NmuCI GTSAC 1 cut(s) 485
NspI RCATGY 1 cut(s) 768
NspV TTCGAA 1 cut(s) 126
PaeI GCATGC 1 cut(s) 768
PctI GAATGC 1 cut(s) 867
PinAI ACCGGT 1 cut(s) 308
PkrI GCNGC 4 cut(s) 241, 381, 565, 590
PleI GAGTC 2 cut(s) 56, 448
PpsI GAGTC 2 cut(s) 56, 448
Psp124BI GAGCTC 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 670
PspGI CCWGG 1 cut(s) 493
PspPI GGNCC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 670
RseI CAYNNNNRTG 1 cut(s) 632
SacI GAGCTC 1 cut(s) 553
SalI GTCGAC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 221, 462
SatI GCNGC 4 cut(s) 240, 380, 564, 589
Sau3AI GATC 2 cut(s) 289, 801
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 2 cut(s) 56, 449
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 1 cut(s) 553
SfaNI GCATC 2 cut(s) 274, 434
SfuI TTCGAA 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SphI GCATGC 1 cut(s) 768
Sse9I AATT 6 cut(s) 102, 193, 223, 232, 605, 708
SsiI CCGC 5 cut(s) 86, 322, 458, 588, 638
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 1 cut(s) 553
StyD4I CCNGG 1 cut(s) 493
StyI CCWWGG 2 cut(s) 341, 592
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 12
TaqI TCGA 4 cut(s) 60, 126, 144, 753
TasI AATT 6 cut(s) 102, 193, 223, 232, 605, 708
TauI GCSGC 1 cut(s) 591
Tru1I TTAA 2 cut(s) 221, 462
Tru9I TTAA 2 cut(s) 221, 462
TscAI CASTG 3 cut(s) 745, 878, 888
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 3 cut(s) 239, 379, 563
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 2 cut(s) 806, 824
TspRI CASTG 3 cut(s) 745, 878, 888
XapI RAATTY 2 cut(s) 193, 605
XceI RCATGY 1 cut(s) 768
XcmI CCANNNNNNNNNTGG 1 cut(s) 778
XmaJI CCTAGG 1 cut(s) 341
XmiI GTMKAC 2 cut(s) 60, 516
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.