Prupe.6G222900_v2.0.a1

UPF0553 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016736
Physical Location & Seq
Forward (+)
22796214 .. 22799956
3743 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G222900.1

Sequence Viewer

Length: 918 bp
ATGGACGATGTCAGGGCTAGCTCGGCTTGGGTCGCAAGCCATTCTTCTCATGTCGTCGTCGACTCCTCAGGGATTGAGAAAGTGGCGGAGACTATAGACACAATCCCGAAGGTGAATTGGGATTTCGAAGGAATTCACTATTTTGACAATGGGCCTCTCACCGTTCAGTACCTGTTTGTGTTGGATGCTTTGAATTTTTGCTTTTGGCCTGATAAGGACTTAAATTACGATAATTTGGCCGCAGGTCTAAAGGCAGCTCTACAAAATGACATATCTGTGTTTGATGTGGATCGTCTTCAGAAGTACACTGGTCCTGAACTACGGGAGCTGTTGAAATGGCCTAGGCCACTACCTCTGGAGGATGAGAGAGTTCGTTTGTTGCATGAGGTTGGGTTTGAGCTGGAGAGAAGCTTTGATGGCAAGGCATCCAATCTTGTAGAGTCCTGTGGAAAATCAGCTGTTAAGCTTGTAGCTCTTGTTACTCGTCACTTTCCTGGTTTCCGAGACCACTCAGTATACAAAGGCCACCAAGTATTCTTGTATAAAAGAGCGCAGATATTTGCAGCAGATTTATGGGGTGCATTTGGTGGCCAAGGATATGGAGAATTTTATGACATTGGCTCAATTACTATTATGGCGGATTATATTGTTCCAGCTGTGCTTCGGCAGCTTGGTGTACTGAAATATAGTGCGACCCTTGCCAGCACGATTGAGGCTAATAGTCAAATAGATGCAGGCAGTGAGGAGGAAGTTGAATTACGGGCTTGCTCCATATATGCTGTGGAGAAAATGAAGGAGTTGATCAGCATGAAATCAGGGAAGCAGGTGCTGAGTATTGAGTTAGACCTTTGGCTTTGGTCTTTTGGCATTCAGTGTCCTGCTCTGCAACATCATAGGACACTCTCTATATATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Q_salvage

Protein Analysis

306

Amino Acids

34.36

Weight (kDa)

5.21

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016736)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17400 FvH4_1g17400
malus_domestica MD00G1015500.v1.1 MD15G1294900.v1.1
prunus_persica Prupe.6G222900_v2.0.a1
pyrus_communis pycom15g25770
rosa_chinensis RchiOBHm_Chr2g0107591
rosa_laevigata RLG00000017593
rosa_multiflora Rmu_sc0000800.1_g000030
rosa_roxburghii Rroxscaffold_2G00136170
rosa_rugosa Rorug02G0145200
rosa_samantha Rh2BG207700 Rh2DG202600
rosa_wichuraiana Rw2G015460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 814
Acc36I ACCTGC 2 cut(s) 233, 814
AccI GTMKAC 2 cut(s) 60, 516
AciI CCGC 3 cut(s) 86, 240, 638
AclWI GGATC 1 cut(s) 297
AcoI YGGCCR 2 cut(s) 237, 589
AcsI RAATTY 3 cut(s) 132, 193, 605
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 3 cut(s) 170, 305, 678
AgsI TTSAA 3 cut(s) 193, 334, 755
AjnI CCWGG 1 cut(s) 493
Alw26I GTCTC 2 cut(s) 83, 498
AlwI GGATC 1 cut(s) 297
AlwNI CAGNNNCTG 2 cut(s) 172, 829
AoxI GGCC 7 cut(s) 152, 206, 237, 338, 344, 523, 589
ApeKI GCWGC 3 cut(s) 254, 563, 667
ApoI RAATTY 3 cut(s) 132, 193, 605
Asp700I GAANNNNTTC 1 cut(s) 132
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 2 cut(s) 152, 311
AsuHPI GGTGA 2 cut(s) 124, 151
AsuII TTCGAA 1 cut(s) 126
AsuNHI GCTAGC 1 cut(s) 17
AvaII GGWCC 1 cut(s) 311
AvrII CCTAGG 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 67
BalI TGGCCA 1 cut(s) 591
BarI GAAGNNNNNNTAC 2 cut(s) 741, 773
BbsI GAAGAC 1 cut(s) 287
BbvI GCAGC 3 cut(s) 266, 575, 679
BccI CCATC 1 cut(s) 410
BciT130I CCWGG 1 cut(s) 495
BclI TGATCA 1 cut(s) 801
BcoDI GTCTC 2 cut(s) 83, 498
BfaI CTAG 2 cut(s) 18, 342
BfmI CTRYAG 1 cut(s) 93
BfuAI ACCTGC 2 cut(s) 233, 814
BisI GCNGC 4 cut(s) 240, 255, 564, 668
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 4 cut(s) 241, 256, 565, 669
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 152, 311
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 3 cut(s) 175, 434, 721
BmtI GCTAGC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 287
BpmI CTGGAG 2 cut(s) 377, 422
Bpu14I TTCGAA 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 341, 592
Bse1I ACTGG 1 cut(s) 313
Bse21I CCTNAGG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 2 cut(s) 341, 592
BseGI GGATG 3 cut(s) 190, 367, 425
BseJI GATNNNNATC 1 cut(s) 288
BseMII CTCAG 3 cut(s) 81, 525, 821
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 2 cut(s) 55, 758
BseXI GCAGC 3 cut(s) 266, 575, 679
BshFI GGCC 7 cut(s) 154, 208, 239, 340, 346, 525, 591
BsmAI GTCTC 2 cut(s) 83, 498
BsmI GAATGC 1 cut(s) 867
BsnI GGCC 7 cut(s) 154, 208, 239, 340, 346, 525, 591
Bso31I GGTCTC 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 126
Bsp143I GATC 2 cut(s) 289, 801
BspACI CCGC 3 cut(s) 86, 240, 638
BspANI GGCC 7 cut(s) 154, 208, 239, 340, 346, 525, 591
BspCNI CTCAG 3 cut(s) 80, 524, 822
BspMI ACCTGC 2 cut(s) 233, 814
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 498
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 341, 592
BssMI GATC 2 cut(s) 289, 801
BssNAI GTATAC 1 cut(s) 517
BssT1I CCWWGG 2 cut(s) 341, 592
Bst1107I GTATAC 1 cut(s) 517
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 163
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 5 cut(s) 19, 37, 703, 736, 766
BstDEI CTNAG 3 cut(s) 67, 511, 830
BstF5I GGATG 3 cut(s) 190, 367, 425
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 2 cut(s) 292, 804
BstMAI GTCTC 2 cut(s) 83, 498
BstMBI GATC 2 cut(s) 289, 801
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 417, 667, 698
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 3 cut(s) 266, 575, 679
BstV2I GAAGAC 1 cut(s) 287
BstXI CCANNNNNNTGG 1 cut(s) 599
BstZ17I GTATAC 1 cut(s) 517
Bsu36I CCTNAGG 1 cut(s) 67
BsuRI GGCC 7 cut(s) 154, 208, 239, 340, 346, 525, 591
BtsCI GGATG 3 cut(s) 190, 367, 425
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 3 cut(s) 306, 745, 878
BveI ACCTGC 2 cut(s) 233, 814
Cac8I GCNNGC 5 cut(s) 19, 37, 703, 736, 766
CaiI CAGNNNCTG 2 cut(s) 172, 829
CfoI GCGC 1 cut(s) 553
Cfr13I GGNCC 2 cut(s) 152, 311
Csp6I GTAC 3 cut(s) 169, 304, 677
CviAII CATG 3 cut(s) 50, 383, 808
CviQI GTAC 3 cut(s) 169, 304, 677
DdeI CTNAG 3 cut(s) 67, 511, 830
DpnI GATC 2 cut(s) 291, 803
DpnII GATC 2 cut(s) 289, 801
EaeI YGGCCR 2 cut(s) 237, 589
EciI GGCGGA 2 cut(s) 101, 653
Eco130I CCWWGG 2 cut(s) 341, 592
Eco31I GGTCTC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 281
Eco81I CCTNAGG 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 2 cut(s) 341, 592
ErhI CCWWGG 2 cut(s) 341, 592
FaeI CATG 3 cut(s) 53, 386, 811
FalI AAGNNNNNCTT 2 cut(s) 28, 60
FatI CATG 3 cut(s) 49, 382, 807
FbaI TGATCA 1 cut(s) 801
FblI GTMKAC 2 cut(s) 60, 516
Fnu4HI GCNGC 4 cut(s) 240, 255, 564, 668
FokI GGATG 3 cut(s) 197, 374, 412
Fsp4HI GCNGC 4 cut(s) 240, 255, 564, 668
FspBI CTAG 2 cut(s) 18, 342
GlaI GCGC 1 cut(s) 552
GluI GCNGC 4 cut(s) 240, 255, 564, 668
GsuI CTGGAG 2 cut(s) 377, 422
HaeIII GGCC 7 cut(s) 154, 208, 239, 340, 346, 525, 591
HhaI GCGC 1 cut(s) 553
Hin1II CATG 3 cut(s) 53, 386, 811
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 2 cut(s) 409, 464
HinfI GANTC 2 cut(s) 62, 440
HphI GGTGA 2 cut(s) 124, 151
Hpy166II GTNNAC 4 cut(s) 61, 306, 517, 677
Hpy188I TCNGA 2 cut(s) 300, 503
Hpy188III TCNNGA 3 cut(s) 106, 314, 356
Hpy8I GTNNAC 4 cut(s) 61, 306, 517, 677
Hpy99I CGWCG 2 cut(s) 59, 62
HpyAV CCTTC 3 cut(s) 103, 122, 787
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 5 cut(s) 382, 563, 581, 734, 886
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 417, 667, 698
HpyF3I CTNAG 3 cut(s) 67, 511, 830
Hsp92II CATG 3 cut(s) 53, 386, 811
HspAI GCGC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 801
Kzo9I GATC 2 cut(s) 289, 801
LmnI GCTCC 2 cut(s) 325, 773
Lsp1109I GCAGC 3 cut(s) 266, 575, 679
LweI GCATC 3 cut(s) 175, 434, 721
MaeI CTAG 2 cut(s) 18, 342
MaeIII GTNAC 2 cut(s) 478, 485
MalI GATC 2 cut(s) 291, 803
MboI GATC 2 cut(s) 289, 801
MboII GAAGA 2 cut(s) 36, 287
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 8 cut(s) 115, 132, 193, 223, 232, 605, 624, 755
MluNI TGGCCA 1 cut(s) 591
MlyI GAGTC 2 cut(s) 56, 449
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 8 cut(s) 76, 165, 352, 363, 379, 706, 736, 739
Mox20I TGGCCA 1 cut(s) 591
MroXI GAANNNNTTC 1 cut(s) 132
MscI TGGCCA 1 cut(s) 591
MseI TTAA 3 cut(s) 221, 462, 916
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 591
MspA1I CMGCKG 2 cut(s) 458, 656
MspR9I CCNGG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 867
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 417, 667, 698
NdeII GATC 2 cut(s) 289, 801
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 3 cut(s) 53, 386, 811
NmuCI GTSAC 1 cut(s) 485
NspV TTCGAA 1 cut(s) 126
PaqCI CACCTGC 1 cut(s) 814
PctI GAATGC 1 cut(s) 867
PdmI GAANNNNTTC 1 cut(s) 132
PflFI GACNNNGTC 1 cut(s) 8
PkrI GCNGC 4 cut(s) 241, 256, 565, 669
PleI GAGTC 2 cut(s) 56, 448
PpsI GAGTC 2 cut(s) 56, 448
Psp6I CCWGG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 493
PspPI GGNCC 2 cut(s) 152, 311
PstNI CAGNNNCTG 2 cut(s) 172, 829
PsyI GACNNNGTC 1 cut(s) 8
PvuII CAGCTG 2 cut(s) 458, 656
RsaI GTAC 3 cut(s) 170, 305, 678
RsaNI GTAC 3 cut(s) 169, 304, 677
RseI CAYNNNNRTG 1 cut(s) 275
SalI GTCGAC 1 cut(s) 59
SaqAI TTAA 3 cut(s) 221, 462, 916
SatI GCNGC 4 cut(s) 240, 255, 564, 668
Sau3AI GATC 2 cut(s) 289, 801
Sau96I GGNCC 2 cut(s) 152, 311
SchI GAGTC 2 cut(s) 56, 449
ScrFI CCNGG 1 cut(s) 495
SfaNI GCATC 3 cut(s) 175, 434, 721
SfcI CTRYAG 1 cut(s) 93
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse9I AATT 8 cut(s) 115, 132, 193, 223, 232, 605, 624, 755
SsiI CCGC 3 cut(s) 86, 240, 638
SspMI CTAG 2 cut(s) 18, 342
StyD4I CCNGG 1 cut(s) 493
StyI CCWWGG 2 cut(s) 341, 592
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 60, 126
TasI AATT 8 cut(s) 115, 132, 193, 223, 232, 605, 624, 755
TatI WGTACW 2 cut(s) 303, 676
TauI GCSGC 1 cut(s) 242
Tru1I TTAA 3 cut(s) 221, 462, 916
Tru9I TTAA 3 cut(s) 221, 462, 916
TscAI CASTG 3 cut(s) 313, 745, 878
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 3 cut(s) 254, 563, 667
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 2 cut(s) 806, 824
TspRI CASTG 3 cut(s) 313, 745, 878
Tth111I GACNNNGTC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 3 cut(s) 132, 193, 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 778
XmaJI CCTAGG 1 cut(s) 341
XmiI GTMKAC 2 cut(s) 60, 516
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 2 cut(s) 18, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.