Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014436

Physical Location & Seq

Genomic Coordinates Forward (+)

10301393 .. 10303330

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGATACCTTGTTTAGGCTTGTCACTCTTCAACAACAACAACAGCAGCAACAATCTGATCAATCTTTCAATTCATCCACCAGAACTACCACCACCACTTCCAGCAGCTCCAGATCCTTCACTCACCTCCCTCAACACCACCACCACCATCACTACCCCCAACAAAACGACGTCGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACTTCTCCTCTTCTTCTTCTAAGGCTCACTACTACCCCACCCCACCAACCCCGACCCCTCCTCCTCCTCCGCTCACCACCACCACCACCACTCCCACTCCCACGGACTTCTCCTTCTCTCCCGCCCACGACCTCCTCAACTTCGAATTCTCCTCCCCCAAGTGGGCCCCTGACCTCCTCTTAGAAGCCGCCCGGGCCATTGCTGACAAGAACAGCGCCAGAGTTCAACAGCTCATGTGGATGCTCAACGAGCTCGGCTCTCCCTACGGCGACACCGATCAGAAGCTCGCCTCCTACTTCCTCCAGGCCCTCTTCAGCCGCATGACCGACTCCGGCGATCGCTGCTACCGCACCTTAGTCTCTGCCTCGGAGAAAACATGTTCATTTGAGTCCACCAGAAAAATGGTCTTGAAATTTCAGGAGGTGAGTCCTTGGACTACATTCGGTCACGTCGCTTGTAATGGTGCAATTATGGAAGCCTTCGACGGTGAGGCCAAGCTTCACATAGTCGACATCAGCAACACTTACTGCACGCAGTGGCCGACTCTACTGGAGGCTCTCGCCACACGAACTGATGAGACGCCGCATCTGCGTCTCACCAGTATCGTCGTCAGCAGAGCTGGAGATGGCTCTGCTGGCGTTGGCTCCACGCAGAAAGTAATGAAGGAAATCGGCGCCAGAATGGAGAAGTTCGCGCGCTTAATGGGCGTGCCGTTCAAATTCAATGCCATCCAGCATTCCGGCGACCTTGCAGAGCTCAACTTAGCTGATTTGGATGTCAAGGACGATGAGGCCTTGGCCATAAACTGTGTCGGATCGTTTCATTCAATCGTGGCCGTCGGAAACCGCCGTGATTATTTGATCTCCGCTTTCCGGAGCTTAAAGCCGAGGATCATAACTGTTGTAGAGGAAGAAGCTGACCTAGACGTCGGAGTTGACGGGTTTGACTTCGTGCAAGGGTTTCAGGAATGCTTGAGATGGTTTAGGGTTTACTTTGAGGCTCTAGACGAGAGCTTCGCCAGGACAAGTAACGAAAGGTTGATGCTCGAGCGGGCGGCCGGCCGAGCCATCGTGGACTTGGTGGCCTGTGCGCCGCCGGACTCCGTCGAGCGGCGCGAGTCGGCGATGCGGTGGTCGAGGCGTATGCATGGGGCCGGGTTCAGTCCCATTTCATTTAGCGATGAGGTGTGCGATGACGTACGGGCCTTGTTGCGGAGGTACAAGGAAGGGTGGTCAATGACGCAGTGTGGTGACTCCGTCGCCGGAATATTCTTGTCGTGGAAGGACCAGCCGGTGGTTTGGGCCAGCGCTTGGAGGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007346 GO:0007389 GO:0008150 GO:0008356 GO:0009889 GO:0009956 GO:0009987 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045786 GO:0045930 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051171 GO:0051252 GO:0051301 GO:0051726 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

510

Amino Acids

57.25

Weight (kDa)

5.43

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	127 - 508	2e-104	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37650
fragaria_vesca	FvH4_1g17690
malus_domestica	MD02G1185900.v1.1 MD15G1307800.v1.1
prunus_persica	Prupe.6G220800_v2.0.a1
pyrus_communis	pycom02g15090 pycom15g26030
rosa_chinensis	RchiOBHm_Chr2g0108031
rosa_laevigata	RLG00000017634
rosa_multiflora	Rmu_sc0001484.1_g000021
rosa_roxburghii	Rroxscaffold_2G00135710
rosa_rugosa	Rorug02G0149800
rosa_samantha	Rh2AG198800 Rh2BG211700 Rh2CG203400 Rh2DG206400
rosa_wichuraiana	Rw2G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1133
AatII	GACGTC	2 cut(s)	174, 1137
AccB1I	GGYRCC	1 cut(s)	881
AccB7I	CCANNNNNTGG	2 cut(s)	1501, 1518
AccBSI	CCGCTC	3 cut(s)	280, 1258, 1318
AccI	GTMKAC	1 cut(s)	717
AccII	CGCG	3 cut(s)	902, 904, 1323
AccIII	TCCGGA	1 cut(s)	1080
AclWI	GGATC	3 cut(s)	108, 1030, 1106
AcoI	YGGCCR	5 cut(s)	746, 1005, 1041, 1263, 1267
AcsI	RAATTY	3 cut(s)	353, 620, 926
AcuI	CTGAAG	1 cut(s)	505
AcyI	GRCGYC	4 cut(s)	171, 788, 882, 1134
AdeI	CACNNNGTG	1 cut(s)	744
AfaI	GTAC	2 cut(s)	1407, 1427
AfeI	AGCGCT	1 cut(s)	1516
AfiI	CCNNNNNNNGG	8 cut(s)	15, 369, 370, 1080, 1317, 1419, 1501, 1518
AflIII	ACRYGT	1 cut(s)	584
AgsI	TTSAA	8 cut(s)	32, 70, 187, 434, 619, 925, 931, 1035
AjiI	CACGTC	1 cut(s)	658
AjnI	CCWGG	2 cut(s)	510, 1226
Alw21I	GWGCWC	2 cut(s)	462, 966
Alw26I	GTCTC	3 cut(s)	571, 779, 806
AlwI	GGATC	3 cut(s)	108, 1030, 1106
Ama87I	CYCGRG	2 cut(s)	399, 1253
Aor13HI	TCCGGA	1 cut(s)	1080
Aor51HI	AGCGCT	1 cut(s)	1516
ApaI	GGGCCC	1 cut(s)	376
ApeKI	GCWGC	3 cut(s)	46, 105, 549
ApoI	RAATTY	3 cut(s)	353, 620, 926
ArsI	GACNNNNNNTTYG	2 cut(s)	1205, 1237
AsiSI	GCGATCGC	1 cut(s)	547
AspLEI	GCGC	7 cut(s)	425, 884, 904, 906, 1300, 1323, 1517
AspS9I	GGNCC	8 cut(s)	372, 373, 402, 514, 1359, 1410, 1492, 1509
AsuC2I	CCSGG	3 cut(s)	400, 401, 1363
AsuHPI	GGTGA	6 cut(s)	116, 274, 643, 707, 796, 1469
AsuII	TTCGAA	1 cut(s)	351
AvaI	CYCGRG	2 cut(s)	399, 1253
AvaII	GGWCC	1 cut(s)	1492
BaeGI	GKGCMC	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	1007
BanI	GGYRCC	1 cut(s)	881
BanII	GRGCYC	3 cut(s)	376, 462, 966
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	462, 966
BbvI	GCAGC	3 cut(s)	58, 117, 536
BccI	CCATC	5 cut(s)	156, 827, 944, 1179, 1283
BceAI	ACGGC	4 cut(s)	490, 904, 1028, 1041
BcgI	CGANNNNNNTGC	2 cut(s)	1333, 1367
BciT130I	CCWGG	2 cut(s)	512, 1228
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	3 cut(s)	400, 401, 1363
BcoDI	GTCTC	3 cut(s)	571, 779, 806
BfaI	CTAG	2 cut(s)	1130, 1211
BfoI	RGCGCY	3 cut(s)	426, 885, 1518
BglI	GCCNNNNNGGC	1 cut(s)	401
BisI	GCNGC	9 cut(s)	47, 106, 396, 526, 550, 791, 1263, 1301, 1319
BlsI	GCNGC	9 cut(s)	48, 107, 397, 527, 551, 792, 1264, 1302, 1320
Bme1390I	CCNGG	5 cut(s)	400, 401, 512, 1228, 1363
Bme18I	GGWCC	1 cut(s)	1492
BmeT110I	CYCGRG	2 cut(s)	399, 1253
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	8 cut(s)	372, 373, 402, 514, 1359, 1410, 1492, 1509
BmiI	GGNNCC	5 cut(s)	374, 375, 853, 883, 1360
BmrFI	CCNGG	5 cut(s)	400, 401, 512, 1228, 1363
BmsI	GCATC	4 cut(s)	438, 802, 1239, 1323
BpiI	GAAGAC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpmI	CTGGAG	4 cut(s)	94, 494, 779, 849
Bpu14I	TTCGAA	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	1201
BpuMI	CCSGG	3 cut(s)	400, 401, 1363
BsaHI	GRCGYC	4 cut(s)	171, 788, 882, 1134
BsaJI	CCNNGG	6 cut(s)	309, 399, 573, 638, 1002, 1094
BsaWI	WCCGGW	1 cut(s)	1080
BsaXI	ACNNNNNCTCC	6 cut(s)	253, 283, 283, 289, 313, 319
Bsc4I	CCNNNNNNNGG	8 cut(s)	15, 369, 370, 1080, 1317, 1419, 1501, 1518
Bse118I	RCCGGY	2 cut(s)	1265, 1498
Bse1I	ACTGG	2 cut(s)	762, 807
Bse3DI	GCAATG	1 cut(s)	405
BseAI	TCCGGA	1 cut(s)	1080
BseBI	CCWGG	2 cut(s)	512, 1228
BseDI	CCNNGG	6 cut(s)	309, 399, 573, 638, 1002, 1094
BseGI	GGATG	5 cut(s)	74, 205, 453, 936, 988
BseLI	CCNNNNNNNGG	8 cut(s)	15, 369, 370, 1080, 1317, 1419, 1501, 1518
BseMI	GCAATG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	762, 807
BsePI	GCGCGC	1 cut(s)	902
BseRI	GAGGAG	7 cut(s)	205, 258, 261, 264, 332, 349, 374
BseSI	GKGCMC	1 cut(s)	376
BseX3I	CGGCCG	2 cut(s)	1263, 1267
BseXI	GCAGC	3 cut(s)	58, 117, 536
BsgI	GTGCAG	1 cut(s)	721
Bsh1236I	CGCG	3 cut(s)	902, 904, 1323
Bsh1285I	CGRYCG	3 cut(s)	547, 1266, 1270
BshNI	GGYRCC	1 cut(s)	881
BsiEI	CGRYCG	3 cut(s)	547, 1266, 1270
BsiHKAI	GWGCWC	2 cut(s)	462, 966
BsiHKCI	CYCGRG	2 cut(s)	399, 1253
BsiSI	CCGG	9 cut(s)	400, 540, 948, 1081, 1266, 1304, 1362, 1470, 1499
BsiWI	CGTACG	1 cut(s)	1405
BslFI	GGGAC	1 cut(s)	1356
BslI	CCNNNNNNNGG	8 cut(s)	15, 369, 370, 1080, 1317, 1419, 1501, 1518
BsmAI	GTCTC	3 cut(s)	571, 779, 806
BsmBI	CGTCTC	2 cut(s)	779, 806
BsmFI	GGGAC	1 cut(s)	1356
BsmI	GAATGC	3 cut(s)	185, 943, 1181
BsoBI	CYCGRG	2 cut(s)	399, 1253
Bsp119I	TTCGAA	1 cut(s)	351
Bsp120I	GGGCCC	1 cut(s)	372
Bsp1286I	GDGCHC	3 cut(s)	376, 462, 966
Bsp13I	TCCGGA	1 cut(s)	1080
Bsp143I	GATC	7 cut(s)	58, 113, 484, 544, 1022, 1068, 1098
BspEI	TCCGGA	1 cut(s)	1080
BspFNI	CGCG	3 cut(s)	902, 904, 1323
BspLI	GGNNCC	5 cut(s)	374, 375, 853, 883, 1360
BspPI	GGATC	3 cut(s)	108, 1030, 1106
BspT104I	TTCGAA	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	881
BsrBI	CCGCTC	3 cut(s)	280, 1258, 1318
BsrDI	GCAATG	1 cut(s)	405
BsrFI	RCCGGY	2 cut(s)	1265, 1498
BsrI	ACTGG	2 cut(s)	762, 807
BssAI	RCCGGY	2 cut(s)	1265, 1498
BssECI	CCNNGG	6 cut(s)	309, 399, 573, 638, 1002, 1094
BssHII	GCGCGC	1 cut(s)	902
BssMI	GATC	7 cut(s)	58, 113, 484, 544, 1022, 1068, 1098
BssNI	GRCGYC	4 cut(s)	171, 788, 882, 1134
BssT1I	CCWWGG	2 cut(s)	638, 1002
Bst2UI	CCWGG	2 cut(s)	512, 1228
Bst4CI	ACNGT	3 cut(s)	695, 1016, 1108
Bst6I	CTCTTC	3 cut(s)	33, 223, 524
BstACI	GRCGYC	4 cut(s)	171, 788, 882, 1134
BstBI	TTCGAA	1 cut(s)	351
BstC8I	GCNNGC	8 cut(s)	495, 740, 844, 904, 917, 1260, 1267, 1513
BstDEI	CTNAG	5 cut(s)	228, 388, 562, 970, 1527
BstDSI	CCRYGG	1 cut(s)	309
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	5 cut(s)	74, 205, 453, 936, 988
BstFNI	CGCG	3 cut(s)	902, 904, 1323
BstH2I	RGCGCY	3 cut(s)	426, 885, 1518
BstHHI	GCGC	7 cut(s)	425, 884, 904, 906, 1300, 1323, 1517
BstKTI	GATC	7 cut(s)	61, 116, 487, 547, 1025, 1071, 1101
BstMAI	GTCTC	3 cut(s)	571, 779, 806
BstMBI	GATC	7 cut(s)	58, 113, 484, 544, 1022, 1068, 1098
BstMCI	CGRYCG	3 cut(s)	547, 1266, 1270
BstMWI	GCNNNNNNNGC	8 cut(s)	401, 457, 549, 555, 796, 843, 912, 1271
BstNI	CCWGG	2 cut(s)	512, 1228
BstNSI	RCATGY	1 cut(s)	588
BstSCI	CCNGG	5 cut(s)	398, 399, 510, 1226, 1361
BstSLI	GKGCMC	1 cut(s)	376
BstUI	CGCG	3 cut(s)	902, 904, 1323
BstV1I	GCAGC	3 cut(s)	58, 117, 536
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	113
BstZI	CGGCCG	2 cut(s)	1263, 1267
BtgI	CCRYGG	1 cut(s)	309
BtgZI	GCGATG	3 cut(s)	1346, 1401, 1413
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	5 cut(s)	74, 205, 453, 936, 988
BtsI	GCAGTG	2 cut(s)	749, 1457
BtsIMutI	CAGTG	2 cut(s)	749, 1457
Cac8I	GCNNGC	8 cut(s)	495, 740, 844, 904, 917, 1260, 1267, 1513
CfoI	GCGC	7 cut(s)	425, 884, 904, 906, 1300, 1323, 1517
Cfr10I	RCCGGY	2 cut(s)	1265, 1498
Cfr13I	GGNCC	8 cut(s)	372, 373, 402, 514, 1359, 1410, 1492, 1509
Cfr9I	CCCGGG	1 cut(s)	399
CseI	GACGC	3 cut(s)	788, 796, 1456
Csp6I	GTAC	2 cut(s)	1406, 1426
CviAII	CATG	5 cut(s)	196, 442, 529, 585, 1355
CviQI	GTAC	2 cut(s)	1406, 1426
DdeI	CTNAG	5 cut(s)	228, 388, 562, 970, 1527
DinI	GGCGCC	1 cut(s)	883
DpnI	GATC	7 cut(s)	60, 115, 486, 546, 1024, 1070, 1100
DpnII	GATC	7 cut(s)	58, 113, 484, 544, 1022, 1068, 1098
DraIII	CACNNNGTG	1 cut(s)	744
DrdI	GACNNNNNNGTC	1 cut(s)	1133
DseDI	GACNNNNNNGTC	1 cut(s)	1133
EaeI	YGGCCR	5 cut(s)	746, 1005, 1041, 1263, 1267
EagI	CGGCCG	2 cut(s)	1263, 1267
Eam1104I	CTCTTC	3 cut(s)	33, 223, 524
EarI	CTCTTC	3 cut(s)	33, 223, 524
Ecl136II	GAGCTC	2 cut(s)	460, 964
EclXI	CGGCCG	2 cut(s)	1263, 1267
Eco130I	CCWWGG	2 cut(s)	638, 1002
Eco147I	AGGCCT	2 cut(s)	1001, 1525
Eco24I	GRGCYC	3 cut(s)	376, 462, 966
Eco47I	GGWCC	1 cut(s)	1492
Eco47III	AGCGCT	1 cut(s)	1516
Eco52I	CGGCCG	2 cut(s)	1263, 1267
Eco53kI	GAGCTC	2 cut(s)	460, 964
Eco57I	CTGAAG	1 cut(s)	505
Eco88I	CYCGRG	2 cut(s)	399, 1253
EcoICRI	GAGCTC	2 cut(s)	460, 964
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoO109I	RGGNCCY	2 cut(s)	373, 514
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	510, 1226
EcoT14I	CCWWGG	2 cut(s)	638, 1002
EcoT22I	ATGCAT	1 cut(s)	1356
EcoT38I	GRGCYC	3 cut(s)	376, 462, 966
EgeI	GGCGCC	1 cut(s)	883
EheI	GGCGCC	1 cut(s)	883
ErhI	CCWWGG	2 cut(s)	638, 1002
Esp3I	CGTCTC	2 cut(s)	779, 806
FaeI	CATG	5 cut(s)	199, 445, 532, 588, 1358
FaqI	GGGAC	1 cut(s)	1356
FatI	CATG	5 cut(s)	195, 441, 528, 584, 1354
FauI	CCCGC	2 cut(s)	337, 1251
FbaI	TGATCA	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	9 cut(s)	47, 106, 396, 526, 550, 791, 1263, 1301, 1319
FokI	GGATG	5 cut(s)	61, 212, 460, 923, 995
FriOI	GRGCYC	3 cut(s)	376, 462, 966
FseI	GGCCGGCC	1 cut(s)	1269
Fsp4HI	GCNGC	9 cut(s)	47, 106, 396, 526, 550, 791, 1263, 1301, 1319
FspBI	CTAG	2 cut(s)	1130, 1211
GlaI	GCGC	7 cut(s)	424, 883, 903, 905, 1299, 1322, 1516
GluI	GCNGC	9 cut(s)	47, 106, 396, 526, 550, 791, 1263, 1301, 1319
GsuI	CTGGAG	4 cut(s)	94, 494, 779, 849
HaeII	RGCGCY	3 cut(s)	426, 885, 1518
HapII	CCGG	9 cut(s)	400, 540, 948, 1081, 1266, 1304, 1362, 1470, 1499
HgaI	GACGC	3 cut(s)	788, 796, 1456
HhaI	GCGC	7 cut(s)	425, 884, 904, 906, 1300, 1323, 1517
Hin1I	GRCGYC	4 cut(s)	171, 788, 882, 1134
Hin1II	CATG	5 cut(s)	199, 445, 532, 588, 1358
Hin6I	GCGC	7 cut(s)	423, 882, 902, 904, 1298, 1321, 1515
HinP1I	GCGC	7 cut(s)	423, 882, 902, 904, 1298, 1321, 1515
HincII	GTYRAC	2 cut(s)	718, 1144
HindII	GTYRAC	2 cut(s)	718, 1144
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	7 cut(s)	536, 596, 634, 751, 1307, 1325, 1460
HpaII	CCGG	9 cut(s)	400, 540, 948, 1081, 1266, 1304, 1362, 1470, 1499
HphI	GGTGA	6 cut(s)	116, 274, 643, 707, 796, 1469
Hpy166II	GTNNAC	5 cut(s)	600, 718, 1144, 1198, 1282
Hpy188I	TCNGA	6 cut(s)	58, 489, 577, 1022, 1049, 1139
Hpy188III	TCNNGA	6 cut(s)	111, 616, 626, 1081, 1172, 1211
Hpy8I	GTNNAC	5 cut(s)	600, 718, 1144, 1198, 1282
Hpy99I	CGWCG	9 cut(s)	173, 176, 662, 695, 818, 1049, 1139, 1316, 1469
HpyAV	CCTTC	6 cut(s)	127, 331, 697, 865, 1427, 1483
HpyCH4III	ACNGT	3 cut(s)	695, 1016, 1108
HpyCH4IV	ACGT	4 cut(s)	171, 657, 1134, 1404
HpyCH4V	TGCA	5 cut(s)	674, 738, 959, 1162, 1354
HpyF10VI	GCNNNNNNNGC	8 cut(s)	401, 457, 549, 555, 796, 843, 912, 1271
HpyF3I	CTNAG	5 cut(s)	228, 388, 562, 970, 1527
HpySE526I	ACGT	4 cut(s)	171, 657, 1134, 1404
Hsp92I	GRCGYC	4 cut(s)	171, 788, 882, 1134
Hsp92II	CATG	5 cut(s)	199, 445, 532, 588, 1358
HspAI	GCGC	7 cut(s)	423, 882, 902, 904, 1298, 1321, 1515
KasI	GGCGCC	1 cut(s)	881
Kpn2I	TCCGGA	1 cut(s)	1080
KroI	GCCGGC	1 cut(s)	1265
KroNI	GCCGGC	1 cut(s)	1267
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	7 cut(s)	58, 113, 484, 544, 1022, 1068, 1098
LmnI	GCTCC	3 cut(s)	113, 857, 1083
Lsp1109I	GCAGC	3 cut(s)	58, 117, 536
LweI	GCATC	4 cut(s)	438, 802, 1239, 1323
MaeI	CTAG	2 cut(s)	1130, 1211
MaeII	ACGT	4 cut(s)	171, 657, 1134, 1404
MaeIII	GTNAC	4 cut(s)	22, 653, 1235, 1457
MalI	GATC	7 cut(s)	60, 115, 486, 546, 1024, 1070, 1100
MbiI	CCGCTC	3 cut(s)	280, 1258, 1318
MboI	GATC	7 cut(s)	58, 113, 484, 544, 1022, 1068, 1098
MboII	GAAGA	9 cut(s)	20, 188, 210, 213, 215, 216, 218, 511, 1130
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	3 cut(s)	376, 462, 966
MlsI	TGGCCA	1 cut(s)	1007
MluCI	AATT	5 cut(s)	70, 353, 620, 675, 926
MluNI	TGGCCA	1 cut(s)	1007
Mly113I	GGCGCC	1 cut(s)	882
MlyI	GAGTC	7 cut(s)	530, 605, 643, 745, 1301, 1334, 1454
MmeI	TCCRAC	3 cut(s)	1000, 1027, 1117
Mox20I	TGGCCA	1 cut(s)	1007
Mph1103I	ATGCAT	1 cut(s)	1356
MroI	TCCGGA	1 cut(s)	1080
MroNI	GCCGGC	1 cut(s)	1265
MscI	TGGCCA	1 cut(s)	1007
MseI	TTAA	2 cut(s)	908, 1088
MslI	CAYNNNNRTG	1 cut(s)	446
Msp20I	TGGCCA	1 cut(s)	1007
MspI	CCGG	9 cut(s)	400, 540, 948, 1081, 1266, 1304, 1362, 1470, 1499
MspR9I	CCNGG	5 cut(s)	400, 401, 512, 1228, 1363
Mva1269I	GAATGC	3 cut(s)	185, 943, 1181
MvaI	CCWGG	2 cut(s)	512, 1228
MvnI	CGCG	3 cut(s)	902, 904, 1323
MwoI	GCNNNNNNNGC	8 cut(s)	401, 457, 549, 555, 796, 843, 912, 1271
NaeI	GCCGGC	1 cut(s)	1267
NarI	GGCGCC	1 cut(s)	882
NciI	CCSGG	3 cut(s)	400, 401, 1363
NdeII	GATC	7 cut(s)	58, 113, 484, 544, 1022, 1068, 1098
NgoMIV	GCCGGC	1 cut(s)	1265
NlaIII	CATG	5 cut(s)	199, 445, 532, 588, 1358
NlaIV	GGNNCC	5 cut(s)	374, 375, 853, 883, 1360
NmeAIII	GCCGAG	3 cut(s)	441, 1119, 1295
NmuCI	GTSAC	3 cut(s)	22, 653, 1457
NsiI	ATGCAT	1 cut(s)	1356
NspI	RCATGY	1 cut(s)	588
NspV	TTCGAA	1 cut(s)	351
PaeR7I	CTCGAG	1 cut(s)	1253
PauI	GCGCGC	1 cut(s)	902
PceI	AGGCCT	2 cut(s)	1001, 1525
PciI	ACATGT	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	3 cut(s)	480, 746, 1320
PctI	GAATGC	3 cut(s)	185, 943, 1181
PdiI	GCCGGC	1 cut(s)	1267
Pfl23II	CGTACG	1 cut(s)	1405
PflFI	GACNNNGTC	2 cut(s)	1310, 1463
PflMI	CCANNNNNTGG	2 cut(s)	1501, 1518
PkrI	GCNGC	9 cut(s)	48, 107, 397, 527, 551, 792, 1264, 1302, 1320
Ple19I	CGATCG	1 cut(s)	547
PleI	GAGTC	7 cut(s)	530, 604, 642, 745, 1301, 1333, 1454
PluTI	GGCGCC	1 cut(s)	885
PpsI	GAGTC	7 cut(s)	530, 604, 642, 745, 1301, 1333, 1454
PscI	ACATGT	1 cut(s)	584
Psp124BI	GAGCTC	2 cut(s)	462, 966
Psp6I	CCWGG	2 cut(s)	510, 1226
PspGI	CCWGG	2 cut(s)	510, 1226
PspLI	CGTACG	1 cut(s)	1405
PspN4I	GGNNCC	5 cut(s)	374, 375, 853, 883, 1360
PspOMI	GGGCCC	1 cut(s)	372
PspPI	GGNCC	8 cut(s)	372, 373, 402, 514, 1359, 1410, 1492, 1509
PspXI	VCTCGAGB	1 cut(s)	1253
PsuI	RGATCY	1 cut(s)	113
PsyI	GACNNNGTC	2 cut(s)	1310, 1463
PteI	GCGCGC	1 cut(s)	902
PvuI	CGATCG	1 cut(s)	547
RgaI	GCGATCGC	1 cut(s)	547
RigI	GGCCGGCC	1 cut(s)	1269
RsaI	GTAC	2 cut(s)	1407, 1427
RsaNI	GTAC	2 cut(s)	1406, 1426
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	2 cut(s)	462, 966
SalI	GTCGAC	1 cut(s)	716
SaqAI	TTAA	2 cut(s)	908, 1088
SatI	GCNGC	9 cut(s)	47, 106, 396, 526, 550, 791, 1263, 1301, 1319
Sau3AI	GATC	7 cut(s)	58, 113, 484, 544, 1022, 1068, 1098
Sau96I	GGNCC	8 cut(s)	372, 373, 402, 514, 1359, 1410, 1492, 1509
SchI	GAGTC	7 cut(s)	530, 605, 643, 745, 1301, 1334, 1454
ScrFI	CCNGG	5 cut(s)	400, 401, 512, 1228, 1363
SduI	GDGCHC	3 cut(s)	376, 462, 966
SfaAI	GCGATCGC	1 cut(s)	547
SfaNI	GCATC	4 cut(s)	438, 802, 1239, 1323
SfoI	GGCGCC	1 cut(s)	883
Sfr274I	CTCGAG	1 cut(s)	1253
SfuI	TTCGAA	1 cut(s)	351
SgfI	GCGATCGC	1 cut(s)	547
SinI	GGWCC	1 cut(s)	1492
SlaI	CTCGAG	1 cut(s)	1253
SmaI	CCCGGG	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	1180, 1253
SmoI	CTYRAG	2 cut(s)	1180, 1253
SrfI	GCCCGGGC	1 cut(s)	401
Sse9I	AATT	5 cut(s)	70, 353, 620, 675, 926
SseBI	AGGCCT	2 cut(s)	1001, 1525
SspDI	GGCGCC	1 cut(s)	881
SspI	AATATT	1 cut(s)	1476
SspMI	CTAG	2 cut(s)	1130, 1211
SstI	GAGCTC	2 cut(s)	462, 966
StuI	AGGCCT	2 cut(s)	1001, 1525
StyD4I	CCNGG	5 cut(s)	398, 399, 510, 1226, 1361
StyI	CCWWGG	2 cut(s)	638, 1002
TaaI	ACNGT	3 cut(s)	695, 1016, 1108
TaiI	ACGT	4 cut(s)	174, 660, 1137, 1407
TaqI	TCGA	7 cut(s)	174, 351, 690, 717, 1254, 1314, 1343
TaqII	GACCGA	2 cut(s)	548, 641
TasI	AATT	5 cut(s)	70, 353, 620, 675, 926
TauI	GCSGC	6 cut(s)	398, 528, 793, 1265, 1303, 1321
Tru1I	TTAA	2 cut(s)	908, 1088
Tru9I	TTAA	2 cut(s)	908, 1088
TscAI	CASTG	2 cut(s)	749, 1457
TseFI	GTSAC	3 cut(s)	22, 653, 1457
TseI	GCWGC	3 cut(s)	46, 105, 549
Tsp45I	GTSAC	3 cut(s)	22, 653, 1457
TspDTI	ATGAA	7 cut(s)	63, 184, 216, 579, 884, 1019, 1368
TspGWI	ACGGA	3 cut(s)	326, 1300, 1453
TspMI	CCCGGG	1 cut(s)	399
TspRI	CASTG	2 cut(s)	749, 1457
Tth111I	GACNNNGTC	2 cut(s)	1310, 1463
Van91I	CCANNNNNTGG	2 cut(s)	1501, 1518
VpaK11BI	GGWCC	1 cut(s)	1492
XagI	CCTNNNNNAGG	1 cut(s)	13
XapI	RAATTY	3 cut(s)	353, 620, 926
XbaI	TCTAGA	1 cut(s)	1210
XceI	RCATGY	1 cut(s)	588
XcmI	CCANNNNNNNNNTGG	2 cut(s)	607, 1282
XhoI	CTCGAG	1 cut(s)	1253
XmaI	CCCGGG	1 cut(s)	399
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	2 cut(s)	1130, 1211
ZraI	GACGTC	2 cut(s)	172, 1135
Zsp2I	ATGCAT	1 cut(s)	1356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.