U4 U6 small nuclear ribonucleoprotein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TB2_DP1_HVA22 | PF03134 | 39 - 115 | 8.5e-27 | TB2/DP1, HVA22 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 243 |
| AccI | GTMKAC | 1 cut(s) | 120 |
| AciI | CCGC | 2 cut(s) | 188, 536 |
| AclWI | GGATC | 4 cut(s) | 9, 22, 205, 427 |
| AcsI | RAATTY | 1 cut(s) | 375 |
| AfaI | GTAC | 2 cut(s) | 114, 127 |
| AgeI | ACCGGT | 1 cut(s) | 115 |
| AgsI | TTSAA | 2 cut(s) | 460, 530 |
| Alw21I | GWGCWC | 1 cut(s) | 421 |
| Alw44I | GTGCAC | 1 cut(s) | 417 |
| AlwI | GGATC | 4 cut(s) | 9, 22, 205, 427 |
| AoxI | GGCC | 2 cut(s) | 382, 533 |
| ApaLI | GTGCAC | 1 cut(s) | 417 |
| ApeKI | GCWGC | 2 cut(s) | 46, 49 |
| ApoI | RAATTY | 1 cut(s) | 375 |
| AsiGI | ACCGGT | 1 cut(s) | 115 |
| AspLEI | GCGC | 1 cut(s) | 7 |
| AspS9I | GGNCC | 2 cut(s) | 382, 533 |
| AsuHPI | GGTGA | 1 cut(s) | 407 |
| AsuII | TTCGAA | 1 cut(s) | 82 |
| BaeGI | GKGCMC | 2 cut(s) | 248, 421 |
| BamHI | GGATCC | 1 cut(s) | 14 |
| BanI | GGYRCC | 1 cut(s) | 243 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 305, 337 |
| Bbv12I | GWGCWC | 1 cut(s) | 421 |
| BbvI | GCAGC | 2 cut(s) | 33, 36 |
| BccI | CCATC | 2 cut(s) | 299, 304 |
| BfaI | CTAG | 3 cut(s) | 444, 540, 569 |
| BfoI | RGCGCY | 1 cut(s) | 8 |
| BglII | AGATCT | 1 cut(s) | 505 |
| BisI | GCNGC | 4 cut(s) | 47, 50, 189, 536 |
| BlsI | GCNGC | 4 cut(s) | 48, 51, 190, 537 |
| BmgT120I | GGNCC | 2 cut(s) | 382, 533 |
| BmiI | GGNNCC | 3 cut(s) | 16, 245, 287 |
| BmsI | GCATC | 3 cut(s) | 364, 471, 511 |
| BoxI | GACNNNNGTC | 1 cut(s) | 564 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 545, 577 |
| Bpu14I | TTCGAA | 1 cut(s) | 82 |
| BsaJI | CCNNGG | 2 cut(s) | 424, 485 |
| BsaWI | WCCGGW | 2 cut(s) | 115, 563 |
| Bse118I | RCCGGY | 1 cut(s) | 115 |
| Bse1I | ACTGG | 1 cut(s) | 27 |
| BseDI | CCNNGG | 2 cut(s) | 424, 485 |
| BseNI | ACTGG | 1 cut(s) | 27 |
| BseSI | GKGCMC | 2 cut(s) | 248, 421 |
| BseXI | GCAGC | 2 cut(s) | 33, 36 |
| BsgI | GTGCAG | 1 cut(s) | 144 |
| BshFI | GGCC | 2 cut(s) | 384, 535 |
| BshNI | GGYRCC | 1 cut(s) | 243 |
| BshTI | ACCGGT | 1 cut(s) | 115 |
| BsiHKAI | GWGCWC | 1 cut(s) | 421 |
| BsiSI | CCGG | 2 cut(s) | 116, 564 |
| BsnI | GGCC | 2 cut(s) | 384, 535 |
| Bsp119I | TTCGAA | 1 cut(s) | 82 |
| Bsp1286I | GDGCHC | 2 cut(s) | 248, 421 |
| Bsp1407I | TGTACA | 1 cut(s) | 125 |
| Bsp143I | GATC | 5 cut(s) | 14, 197, 432, 475, 505 |
| BspACI | CCGC | 2 cut(s) | 188, 536 |
| BspANI | GGCC | 2 cut(s) | 384, 535 |
| BspLI | GGNNCC | 3 cut(s) | 16, 245, 287 |
| BspPI | GGATC | 4 cut(s) | 9, 22, 205, 427 |
| BspT104I | TTCGAA | 1 cut(s) | 82 |
| BspT107I | GGYRCC | 1 cut(s) | 243 |
| BsrFI | RCCGGY | 1 cut(s) | 115 |
| BsrGI | TGTACA | 1 cut(s) | 125 |
| BsrI | ACTGG | 1 cut(s) | 27 |
| BssAI | RCCGGY | 1 cut(s) | 115 |
| BssECI | CCNNGG | 2 cut(s) | 424, 485 |
| BssMI | GATC | 5 cut(s) | 14, 197, 432, 475, 505 |
| BssNAI | GTATAC | 1 cut(s) | 121 |
| BssT1I | CCWWGG | 1 cut(s) | 424 |
| Bst1107I | GTATAC | 1 cut(s) | 121 |
| Bst4CI | ACNGT | 1 cut(s) | 125 |
| BstAUI | TGTACA | 1 cut(s) | 125 |
| BstBI | TTCGAA | 1 cut(s) | 82 |
| BstH2I | RGCGCY | 1 cut(s) | 8 |
| BstHHI | GCGC | 1 cut(s) | 7 |
| BstKTI | GATC | 5 cut(s) | 17, 200, 435, 478, 508 |
| BstMBI | GATC | 5 cut(s) | 14, 197, 432, 475, 505 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 46, 308 |
| BstNSI | RCATGY | 1 cut(s) | 132 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 564 |
| BstSLI | GKGCMC | 2 cut(s) | 248, 421 |
| BstV1I | GCAGC | 2 cut(s) | 33, 36 |
| BstX2I | RGATCY | 4 cut(s) | 14, 197, 432, 505 |
| BstYI | RGATCY | 4 cut(s) | 14, 197, 432, 505 |
| BstZ17I | GTATAC | 1 cut(s) | 121 |
| BsuRI | GGCC | 2 cut(s) | 384, 535 |
| BtsIMutI | CAGTG | 1 cut(s) | 34 |
| CfoI | GCGC | 1 cut(s) | 7 |
| Cfr10I | RCCGGY | 1 cut(s) | 115 |
| Cfr13I | GGNCC | 2 cut(s) | 382, 533 |
| Csp6I | GTAC | 2 cut(s) | 113, 126 |
| CspAI | ACCGGT | 1 cut(s) | 115 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 152, 187 |
| CviAII | CATG | 4 cut(s) | 129, 240, 262, 325 |
| CviQI | GTAC | 2 cut(s) | 113, 126 |
| DpnI | GATC | 5 cut(s) | 16, 199, 434, 477, 507 |
| DpnII | GATC | 5 cut(s) | 14, 197, 432, 475, 505 |
| Eco130I | CCWWGG | 1 cut(s) | 424 |
| EcoT14I | CCWWGG | 1 cut(s) | 424 |
| ErhI | CCWWGG | 1 cut(s) | 424 |
| FaeI | CATG | 4 cut(s) | 132, 243, 265, 328 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 257, 289 |
| FatI | CATG | 4 cut(s) | 128, 239, 261, 324 |
| FauNDI | CATATG | 1 cut(s) | 391 |
| FblI | GTMKAC | 1 cut(s) | 120 |
| Fnu4HI | GCNGC | 4 cut(s) | 47, 50, 189, 536 |
| Fsp4HI | GCNGC | 4 cut(s) | 47, 50, 189, 536 |
| FspBI | CTAG | 3 cut(s) | 444, 540, 569 |
| GlaI | GCGC | 1 cut(s) | 6 |
| GluI | GCNGC | 4 cut(s) | 47, 50, 189, 536 |
| HaeII | RGCGCY | 1 cut(s) | 8 |
| HaeIII | GGCC | 2 cut(s) | 384, 535 |
| HapII | CCGG | 2 cut(s) | 116, 564 |
| HhaI | GCGC | 1 cut(s) | 7 |
| Hin1II | CATG | 4 cut(s) | 132, 243, 265, 328 |
| Hin6I | GCGC | 1 cut(s) | 5 |
| HinP1I | GCGC | 1 cut(s) | 5 |
| HinfI | GANTC | 2 cut(s) | 554, 560 |
| HpaII | CCGG | 2 cut(s) | 116, 564 |
| HphI | GGTGA | 1 cut(s) | 407 |
| Hpy166II | GTNNAC | 2 cut(s) | 121, 419 |
| Hpy188I | TCNGA | 5 cut(s) | 14, 226, 475, 480, 559 |
| Hpy188III | TCNNGA | 2 cut(s) | 457, 569 |
| Hpy8I | GTNNAC | 2 cut(s) | 121, 419 |
| HpyAV | CCTTC | 1 cut(s) | 524 |
| HpyCH4III | ACNGT | 1 cut(s) | 125 |
| HpyCH4V | TGCA | 4 cut(s) | 132, 161, 419, 524 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 46, 308 |
| Hsp92II | CATG | 4 cut(s) | 132, 243, 265, 328 |
| HspAI | GCGC | 1 cut(s) | 5 |
| Kzo9I | GATC | 5 cut(s) | 14, 197, 432, 475, 505 |
| LmnI | GCTCC | 1 cut(s) | 291 |
| LpnPI | CCDG | 4 cut(s) | 40, 129, 478, 562 |
| Lsp1109I | GCAGC | 2 cut(s) | 33, 36 |
| LweI | GCATC | 3 cut(s) | 364, 471, 511 |
| MaeI | CTAG | 3 cut(s) | 444, 540, 569 |
| MalI | GATC | 5 cut(s) | 16, 199, 434, 477, 507 |
| MboI | GATC | 5 cut(s) | 14, 197, 432, 475, 505 |
| MfeI | CAATTG | 2 cut(s) | 138, 525 |
| MflI | RGATCY | 4 cut(s) | 14, 197, 432, 505 |
| MhlI | GDGCHC | 2 cut(s) | 248, 421 |
| MluCI | AATT | 4 cut(s) | 138, 375, 398, 525 |
| MlyI | GAGTC | 2 cut(s) | 554, 563 |
| MmeI | TCCRAC | 2 cut(s) | 42, 313 |
| MnlI | CCTC | 5 cut(s) | 25, 69, 138, 345, 480 |
| MspI | CCGG | 2 cut(s) | 116, 564 |
| MunI | CAATTG | 2 cut(s) | 138, 525 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 46, 308 |
| NdeI | CATATG | 1 cut(s) | 391 |
| NdeII | GATC | 5 cut(s) | 14, 197, 432, 475, 505 |
| NlaIII | CATG | 4 cut(s) | 132, 243, 265, 328 |
| NlaIV | GGNNCC | 3 cut(s) | 16, 245, 287 |
| NmeAIII | GCCGAG | 1 cut(s) | 510 |
| NspI | RCATGY | 1 cut(s) | 132 |
| NspV | TTCGAA | 1 cut(s) | 82 |
| PinAI | ACCGGT | 1 cut(s) | 115 |
| PkrI | GCNGC | 4 cut(s) | 48, 51, 190, 537 |
| PleI | GAGTC | 2 cut(s) | 554, 562 |
| PpsI | GAGTC | 2 cut(s) | 554, 562 |
| PshAI | GACNNNNGTC | 1 cut(s) | 564 |
| PspN4I | GGNNCC | 3 cut(s) | 16, 245, 287 |
| PspPI | GGNCC | 2 cut(s) | 382, 533 |
| PsuI | RGATCY | 4 cut(s) | 14, 197, 432, 505 |
| RsaI | GTAC | 2 cut(s) | 114, 127 |
| RsaNI | GTAC | 2 cut(s) | 113, 126 |
| SatI | GCNGC | 4 cut(s) | 47, 50, 189, 536 |
| Sau3AI | GATC | 5 cut(s) | 14, 197, 432, 475, 505 |
| Sau96I | GGNCC | 2 cut(s) | 382, 533 |
| SchI | GAGTC | 2 cut(s) | 554, 563 |
| SduI | GDGCHC | 2 cut(s) | 248, 421 |
| SetI | ASST | 2 cut(s) | 36, 336 |
| SfaNI | GCATC | 3 cut(s) | 364, 471, 511 |
| SfuI | TTCGAA | 1 cut(s) | 82 |
| Sse9I | AATT | 4 cut(s) | 138, 375, 398, 525 |
| SsiI | CCGC | 2 cut(s) | 188, 536 |
| SspI | AATATT | 1 cut(s) | 219 |
| SspMI | CTAG | 3 cut(s) | 444, 540, 569 |
| StyI | CCWWGG | 1 cut(s) | 424 |
| TaaI | ACNGT | 1 cut(s) | 125 |
| TaqI | TCGA | 1 cut(s) | 82 |
| TasI | AATT | 4 cut(s) | 138, 375, 398, 525 |
| TatI | WGTACW | 1 cut(s) | 125 |
| TauI | GCSGC | 2 cut(s) | 191, 538 |
| TscAI | CASTG | 1 cut(s) | 34 |
| TseI | GCWGC | 2 cut(s) | 46, 49 |
| TspDTI | ATGAA | 3 cut(s) | 168, 278, 341 |
| TspRI | CASTG | 1 cut(s) | 34 |
| VneI | GTGCAC | 1 cut(s) | 417 |
| XapI | RAATTY | 1 cut(s) | 375 |
| XbaI | TCTAGA | 1 cut(s) | 568 |
| XceI | RCATGY | 1 cut(s) | 132 |
| XmiI | GTMKAC | 1 cut(s) | 120 |
| XspI | CTAG | 3 cut(s) | 444, 540, 569 |