Rmu_sc0003659.1_g000007

F-box protein CPR30-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003659.1
Physical Location & Seq
Forward (+)
11792 .. 12653
862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003659.1_g000007.1.cds

Sequence Viewer

Length: 792 bp
atgacggaaacagacctacccgaagatattatagtgattatcctctcttggcttcccgtgaaatccttgatccgattcacctgcgtttcgaaacgcttccgtttcattatattgtccgaccccatattcgccaaatctcaatacaaagcagcttgtgagcagaaatccctaactcacagactcctcctcctctcgtcacacgtcacccctcgtctcgaattcctagacttggaaacgctgtcgtttggggacactttggatttaacaggatttgataaatttcccgataaattttacatctgcaacccatcaactggaatgttgaaggaactaccagaccctggttttacagcaaaaaatcctgatttctggttctccctctactatggtcttggctatctgcctgctactgacaactacaaagttttcgtagcctcccaaaatgtgtacctccgtcctgatcaggactttcgtggggttgaggccaagatgttctcagtaagagatcacgtttggaaaaggattgaaccccgacctcaatcatacgatcaattattcgatggtcaggggactgtttcaaatcatgcacttcattggatatacagaaaaggcggaatagttgcttttgatctggttaaggaggagttccggagtatgcgactgcctaatttcgatgatgtttgtaattataccaccaaccatcttggggtgtctctcggaggatgcctgtctgtacgtatctcgaatatcatattatggcagcattacattatgggtcatgagagaggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

263

Amino Acids

30.38

Weight (kDa)

6.7

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 89
Acc36I ACCTGC 1 cut(s) 89
AccB7I CCANNNNNTGG 2 cut(s) 314, 341
AccIII TCCGGA 1 cut(s) 648
AciI CCGC 1 cut(s) 612
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 3 cut(s) 218, 278, 290
AfaI GTAC 2 cut(s) 449, 735
AfiI CCNNNNNNNGG 4 cut(s) 229, 314, 341, 706
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 3 cut(s) 325, 527, 579
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 218, 717
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 341
Aor13HI TCCGGA 1 cut(s) 648
AoxI GGCC 1 cut(s) 483
ApeKI GCWGC 2 cut(s) 149, 760
ApoI RAATTY 3 cut(s) 218, 278, 290
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
Asp700I GAANNNNTTC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 70, 196
AsuII TTCGAA 1 cut(s) 89
BbvI GCAGC 2 cut(s) 161, 772
BccI CCATC 3 cut(s) 316, 554, 708
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 2 cut(s) 218, 717
BfaI CTAG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 89
BisI GCNGC 2 cut(s) 150, 761
BlsI GCNGC 2 cut(s) 151, 762
Bme1390I CCNGG 1 cut(s) 342
BmgBI CACGTC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 713
Bpu14I TTCGAA 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 737
BsaJI CCNNGG 1 cut(s) 340
BsaWI WCCGGW 1 cut(s) 648
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 314, 341, 706
Bse1I ACTGG 1 cut(s) 319
BseAI TCCGGA 1 cut(s) 648
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 728
BseLI CCNNNNNNNGG 4 cut(s) 229, 314, 341, 706
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 4 cut(s) 173, 176, 179, 656
BseXI GCAGC 2 cut(s) 161, 772
BshFI GGCC 1 cut(s) 485
BsiSI CCGG 1 cut(s) 649
BslFI GGGAC 2 cut(s) 263, 583
BslI CCNNNNNNNGG 4 cut(s) 229, 314, 341, 706
BsmAI GTCTC 2 cut(s) 218, 717
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 2 cut(s) 263, 583
BsnI GGCC 1 cut(s) 485
Bsp119I TTCGAA 1 cut(s) 89
Bsp13I TCCGGA 1 cut(s) 648
Bsp143I GATC 5 cut(s) 69, 460, 505, 547, 628
BspACI CCGC 1 cut(s) 612
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 1 cut(s) 509
BspEI TCCGGA 1 cut(s) 648
BspHI TCATGA 1 cut(s) 778
BspMI ACCTGC 1 cut(s) 89
BspPI GGATC 1 cut(s) 64
BspT104I TTCGAA 1 cut(s) 89
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 5 cut(s) 69, 460, 505, 547, 628
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 574
BstBAI YACGTR 1 cut(s) 737
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 1 cut(s) 496
BstF5I GGATG 1 cut(s) 728
BstKTI GATC 5 cut(s) 72, 463, 508, 550, 631
BstMAI GTCTC 2 cut(s) 218, 717
BstMBI GATC 5 cut(s) 69, 460, 505, 547, 628
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstSNI TACGTA 1 cut(s) 737
BstV1I GCAGC 2 cut(s) 161, 772
BsuRI GGCC 1 cut(s) 485
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 728
BveI ACCTGC 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 405
CaiI CAGNNNCTG 1 cut(s) 341
CciI TCATGA 1 cut(s) 778
Csp6I GTAC 2 cut(s) 448, 734
CviAII CATG 2 cut(s) 584, 779
CviJI RGCY 5 cut(s) 52, 152, 396, 434, 485
CviKI_1 RGCY 5 cut(s) 52, 152, 396, 434, 485
CviQI GTAC 2 cut(s) 448, 734
DdeI CTNAG 1 cut(s) 496
DpnI GATC 5 cut(s) 71, 462, 507, 549, 630
DpnII GATC 5 cut(s) 69, 460, 505, 547, 628
EciI GGCGGA 1 cut(s) 627
Eco105I TACGTA 1 cut(s) 737
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 2 cut(s) 587, 782
FaqI GGGAC 2 cut(s) 263, 583
FatI CATG 2 cut(s) 583, 778
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 2 cut(s) 150, 761
FokI GGATG 1 cut(s) 735
Fsp4HI GCNGC 2 cut(s) 150, 761
FspBI CTAG 1 cut(s) 224
GluI GCNGC 2 cut(s) 150, 761
HaeIII GGCC 1 cut(s) 485
HapII CCGG 1 cut(s) 649
Hin1II CATG 2 cut(s) 587, 782
HinfI GANTC 2 cut(s) 75, 180
HpaII CCGG 1 cut(s) 649
HphI GGTGA 2 cut(s) 70, 196
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 3 cut(s) 74, 118, 719
Hpy188III TCNNGA 8 cut(s) 215, 284, 362, 458, 464, 649, 742, 779
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4IV ACGT 3 cut(s) 201, 510, 736
HpyCH4V TGCA 2 cut(s) 303, 587
HpyF3I CTNAG 1 cut(s) 496
HpySE526I ACGT 3 cut(s) 201, 510, 736
Hsp92II CATG 2 cut(s) 587, 782
Kpn2I TCCGGA 1 cut(s) 648
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 5 cut(s) 69, 460, 505, 547, 628
Lsp1109I GCAGC 2 cut(s) 161, 772
LweI GCATC 1 cut(s) 713
MaeI CTAG 1 cut(s) 224
MaeII ACGT 3 cut(s) 201, 510, 736
MaeIII GTNAC 2 cut(s) 195, 202
MalI GATC 5 cut(s) 71, 462, 507, 549, 630
MboI GATC 5 cut(s) 69, 460, 505, 547, 628
MboII GAAGA 1 cut(s) 35
MluCI AATT 6 cut(s) 218, 278, 290, 551, 667, 685
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 141
MroI TCCGGA 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 2 cut(s) 263, 636
MspI CCGG 1 cut(s) 649
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
NdeII GATC 5 cut(s) 69, 460, 505, 547, 628
NlaIII CATG 2 cut(s) 587, 782
NmuCI GTSAC 2 cut(s) 195, 202
NspV TTCGAA 1 cut(s) 89
PagI TCATGA 1 cut(s) 778
PaqCI CACCTGC 1 cut(s) 89
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 75
PflMI CCANNNNNTGG 2 cut(s) 314, 341
PkrI GCNGC 2 cut(s) 151, 762
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
Ppu21I YACGTR 1 cut(s) 737
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 341
RsaI GTAC 2 cut(s) 449, 735
RsaNI GTAC 2 cut(s) 448, 734
SaqAI TTAA 2 cut(s) 263, 636
SatI GCNGC 2 cut(s) 150, 761
Sau3AI GATC 5 cut(s) 69, 460, 505, 547, 628
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 342
SetI ASST 8 cut(s) 18, 83, 154, 204, 453, 513, 538, 739
SfaNI GCATC 1 cut(s) 713
SfuI TTCGAA 1 cut(s) 89
SnaBI TACGTA 1 cut(s) 737
Sse9I AATT 6 cut(s) 218, 278, 290, 551, 667, 685
SsiI CCGC 1 cut(s) 612
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 574
TaiI ACGT 3 cut(s) 204, 513, 739
TaqI TCGA 5 cut(s) 89, 216, 558, 672, 743
TasI AATT 6 cut(s) 218, 278, 290, 551, 667, 685
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 2 cut(s) 263, 636
Tru9I TTAA 2 cut(s) 263, 636
TseFI GTSAC 2 cut(s) 195, 202
TseI GCWGC 2 cut(s) 149, 760
Tsp45I GTSAC 2 cut(s) 195, 202
TspDTI ATGAA 2 cut(s) 94, 581
TspGWI ACGGA 3 cut(s) 20, 89, 443
Van91I CCANNNNNTGG 2 cut(s) 314, 341
XapI RAATTY 3 cut(s) 218, 278, 290
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.