Rorug02G0095900

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000082
Physical Location & Seq
Forward (+)
7830142 .. 7833171
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0095900.1

Sequence Viewer

Length: 1767 bp
ATGGTGGCCGCCAAGAAAAAAAGCGCGAAAGCAGCAGAAGACGGTGAGATTTTCTCGGCTTCTACTTTCTCAAGTCTCGGCCTTCACTCCAATTTATGCGACCAGCTTCAAGAGAGGTTGGGCTTCAAGGGTCCGACTCTAGTCCAAGCCCAAGCGATCCCGGTTATTCTCTCCGGCCGCCACGTGCTGGTGAATGCGGCGACGGGGACGGGGAAAACGGTGGCGTATTTGGCTCCGGTTGTACACCACCTCCTGAGCTTGCAGCAGCCTCGGATTCAGCGCTCCGATGGTACTTTTGCTTTGGTTCTCGTGCCGACGAGAGAGCTGTGTCTGCAGGTTCATGAGATTTTGCACAAGTTACTGCACCGTTTTCACTGGATTGTGCCTGGTTATGTGATGGGAGGTGAAAAGAGGGAAAAGGAGAAGGCTAGATTGCGCAAAGGCATATCTATTCTCGTTGCAACTCCTGGAAGGCTGTTGGATCATTTGAAGCATACATCATCATTTTCGCACACGAATTTGCGGTGGATAATTTTCGATGAAGCAGACAGGATTTTGGAACTTGGATTTGGAAAGGAGATAGAGGAAATACTAGATCTTTTGGGTTCGAGGAAACATGCCAAGGATAGTGGTGCGTCAAGTAAATTTGAATTTCAGAGGCAGAATTTGCTGTTGTCTGCGACCTTGAATGAAAAAGTCAATCATCTTGCAAAGATGAGCTTAGAGAAACCGGTCTTGATTGGTATGCCTGACAAGAAGATGCGGTCGATTACAAAATTTGAACCTTTAGGGTCTTCAGACTCTGACACAGAGGAACCGCAATATTCTGTGAAGGCAACAGGCTCTACAAATGAAGATTATAAACTTCCGGCCCAATTGACTCAGAGATATGTTAAAGTACCATGTAATGCGCGGCTTGCTGTACTTCTTTCCATTCTAAAGCATCTTTTTGAGCGAGAAACTTCTGAAAAAATTGTGCTATTCTTTTCAACATGTGATGCAGTGGATTTTCACTACTCTTTGTTAAGTGAGTTCCAATTCAAACCTAATTCAGGACCAGGATCAGAACTTAAGCAGAAATTTCTTAGATGCAAGACCTTCAGGTTACATGGCAATATGGAGCAAGTGGATCGAAGAACCACATTCGAGACCTTTAAAACAGAAAAATCAGCTCTTCTTTTGTCCACAGATGTTTCTGCCAGAGGTTTGGATTTCCCCAAAGTTAGATGTATCATACAGTATGATTCTCCAGGCGAGGCTACTGAATATGTGCATAGGGTTGGCAGAACAGCTCGGCTGGGTGAAAGAGGAGATTCAATATTATTTTTACAGCCAATTGAAATCGATTATTTGAAAGAATTGGAGAAGCATGGTGTTTCTCTAGTAGAGTATCCTCTCCTCAAAGTATTAGATAGTTTCCCACTATATGGTCAGCAACATGTCAGGAAGTTTGTTTACATTGATGCACATCCTTGGGTGCTGGCTTTGCAAAAGGCACTTGAAGCGTTTACAGATCAGCCAAACATAAAGCCTCTGGCCAAGAATGCATTTTGCTCTTGGGTTCGTGCATACACTGCCCACCGTGGTGAGCTGAAGAGAATTTTTGTAGCAAAGAAACTTCACTTGGGACATGTTGCAAAAAGCTTTGCATTAAAAGAACAACCTTCCTTGGTTGGGGGTTCGTTTCACAAGCAAGCACAGAAGAGGAAGAGAGACGAAAGGCAGAAGGGAGGAATGAAAAAGAGGAAGTTTAACAGGAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

588

Amino Acids

66.54

Weight (kDa)

9.66

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 47 - 234 7.4e-42 DEAD/DEAH box helicase
ResIII PF04851 49 - 197 6.6e-10 Type III restriction enzyme, res subunit
Helicase_C PF00271 311 - 434 1.1e-22 Helicase conserved C-terminal domain
CTE_SPB4 PF13959 507 - 556 3e-17 ATP-dependent rRNA helicase SPB4-like, C-terminal extension
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 861
Acc16I TGCGCA 1 cut(s) 437
Acc36I ACCTGC 1 cut(s) 325
AccB7I CCANNNNNTGG 2 cut(s) 187, 1427
AccII CGCG 2 cut(s) 26, 913
AciI CCGC 7 cut(s) 9, 178, 197, 523, 763, 818, 913
AclWI GGATC 4 cut(s) 151, 489, 1069, 1137
AcoI YGGCCR 3 cut(s) 6, 175, 1536
AcsI RAATTY 7 cut(s) 517, 644, 650, 664, 776, 1079, 1599
AcuI CTGAAG 3 cut(s) 780, 1084, 1613
AcvI CACGTG 1 cut(s) 184
AfaI GTAC 4 cut(s) 243, 292, 900, 924
AfeI AGCGCT 1 cut(s) 281
AfiI CCNNNNNNNGG 4 cut(s) 187, 1052, 1427, 1674
AflII CTTAAG 1 cut(s) 1070
AflIII ACRYGT 3 cut(s) 992, 1438, 1630
AgeI ACCGGT 1 cut(s) 730
AjnI CCWGG 4 cut(s) 385, 466, 1057, 1249
AjuI GAANNNNNNNTTGG 4 cut(s) 552, 584, 1607, 1639
AleI CACNNNNGTG 1 cut(s) 1584
AluBI AGCT 8 cut(s) 106, 258, 325, 720, 1172, 1292, 1591, 1644
AluI AGCT 8 cut(s) 106, 258, 325, 720, 1172, 1292, 1591, 1644
Alw26I GTCTC 3 cut(s) 80, 1142, 1707
AlwI GGATC 4 cut(s) 151, 489, 1069, 1137
AlwNI CAGNNNCTG 1 cut(s) 803
Aor51HI AGCGCT 1 cut(s) 281
AoxI GGCC 5 cut(s) 6, 79, 175, 870, 1536
ApeKI GCWGC 3 cut(s) 32, 262, 265
ApoI RAATTY 7 cut(s) 517, 644, 650, 664, 776, 1079, 1599
AsiGI ACCGGT 1 cut(s) 730
AspLEI GCGC 4 cut(s) 26, 282, 438, 913
AspS9I GGNCC 3 cut(s) 131, 871, 1055
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 5 cut(s) 56, 202, 416, 1313, 1598
AvaII GGWCC 2 cut(s) 131, 1055
BalI TGGCCA 1 cut(s) 1538
BarI GAAGNNNNNNTAC 2 cut(s) 1439, 1471
BauI CACGAG 1 cut(s) 308
BbrPI CACGTG 1 cut(s) 184
BbsI GAAGAC 2 cut(s) 45, 786
BbvI GCAGC 3 cut(s) 44, 274, 277
BccI CCATC 2 cut(s) 281, 391
BcgI CGANNNNNNTGC 4 cut(s) 251, 285, 1112, 1146
BciT130I CCWGG 4 cut(s) 387, 468, 1059, 1251
BciVI GTATCC 1 cut(s) 1401
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 3 cut(s) 80, 1142, 1707
BfaI CTAG 4 cut(s) 140, 429, 593, 1382
BfmI CTRYAG 1 cut(s) 332
BfoI RGCGCY 1 cut(s) 283
BfrI CTTAAG 1 cut(s) 1070
BfuAI ACCTGC 1 cut(s) 325
BfuI GTATCC 1 cut(s) 1401
BglII AGATCT 1 cut(s) 595
BisI GCNGC 7 cut(s) 9, 33, 178, 198, 263, 266, 914
BlsI GCNGC 7 cut(s) 10, 34, 179, 199, 264, 267, 915
Bme1390I CCNGG 5 cut(s) 161, 387, 468, 1059, 1251
Bme18I GGWCC 2 cut(s) 131, 1055
BmgT120I GGNCC 3 cut(s) 131, 871, 1055
BmiI GGNNCC 3 cut(s) 132, 234, 816
BmrFI CCNGG 5 cut(s) 161, 387, 468, 1059, 1251
BmsI GCATC 5 cut(s) 750, 952, 988, 1079, 1453
BoxI GACNNNNGTC 1 cut(s) 140
BpiI GAAGAC 2 cut(s) 45, 786
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 1 cut(s) 1233
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 1344
BsaAI YACGTR 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 1467
BsaI GGTCTC 1 cut(s) 1142
BsaJI CCNNGG 5 cut(s) 269, 621, 1472, 1582, 1668
BsaWI WCCGGW 2 cut(s) 235, 730
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 4 cut(s) 187, 1052, 1427, 1674
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 380
Bse8I GATNNNNATC 1 cut(s) 1467
BseBI CCWGG 4 cut(s) 387, 468, 1059, 1251
BseCI ATCGAT 1 cut(s) 1344
BseDI CCNNGG 5 cut(s) 269, 621, 1472, 1582, 1668
BseGI GGATG 1 cut(s) 1468
BseJI GATNNNNATC 1 cut(s) 1467
BseLI CCNNNNNNNGG 4 cut(s) 187, 1052, 1427, 1674
BseMII CTCAG 2 cut(s) 245, 896
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 2 cut(s) 1323, 1388
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 3 cut(s) 44, 274, 277
BseYI CCCAGC 1 cut(s) 1297
BsgI GTGCAG 1 cut(s) 347
Bsh1236I CGCG 2 cut(s) 26, 913
Bsh1285I CGRYCG 2 cut(s) 178, 767
BshFI GGCC 5 cut(s) 8, 81, 177, 872, 1538
BshTI ACCGGT 1 cut(s) 730
BshVI ATCGAT 1 cut(s) 1344
BsiEI CGRYCG 2 cut(s) 178, 767
BsiSI CCGG 5 cut(s) 161, 174, 236, 731, 869
BslFI GGGAC 2 cut(s) 220, 1641
BslI CCNNNNNNNGG 4 cut(s) 187, 1052, 1427, 1674
BsmAI GTCTC 3 cut(s) 80, 1142, 1707
BsmBI CGTCTC 1 cut(s) 1707
BsmFI GGGAC 2 cut(s) 220, 1641
BsmI GAATGC 2 cut(s) 199, 1549
BsnI GGCC 5 cut(s) 8, 81, 177, 872, 1538
Bso31I GGTCTC 1 cut(s) 1142
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 6 cut(s) 156, 481, 595, 1061, 1129, 1513
BspACI CCGC 7 cut(s) 9, 178, 197, 523, 763, 818, 913
BspANI GGCC 5 cut(s) 8, 81, 177, 872, 1538
BspCNI CTCAG 2 cut(s) 246, 895
BspDI ATCGAT 1 cut(s) 1344
BspFNI CGCG 2 cut(s) 26, 913
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 132, 234, 816
BspMAI CTGCAG 1 cut(s) 336
BspMI ACCTGC 1 cut(s) 325
BspPI GGATC 4 cut(s) 151, 489, 1069, 1137
BspQI GCTCTTC 1 cut(s) 1179
BspTI CTTAAG 1 cut(s) 1070
BspTNI GGTCTC 1 cut(s) 1142
BsrFI RCCGGY 1 cut(s) 730
BsrGI TGTACA 1 cut(s) 241
BsrI ACTGG 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 5 cut(s) 269, 621, 1472, 1582, 1668
BssMI GATC 6 cut(s) 156, 481, 595, 1061, 1129, 1513
BssSI CACGAG 1 cut(s) 308
BssT1I CCWWGG 3 cut(s) 621, 1472, 1668
Bst2BI CACGAG 1 cut(s) 308
Bst2UI CCWGG 4 cut(s) 387, 468, 1059, 1251
Bst4CI ACNGT 5 cut(s) 44, 220, 368, 1239, 1583
Bst6I CTCTTC 4 cut(s) 1179, 1589, 1697, 1703
BstAFI CTTAAG 1 cut(s) 1070
BstAPI GCANNNNNTGC 2 cut(s) 667, 1574
BstAUI TGTACA 1 cut(s) 241
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 4 cut(s) 260, 918, 1482, 1695
BstDEI CTNAG 4 cut(s) 254, 721, 882, 1085
BstDSI CCRYGG 1 cut(s) 1582
BstENI CCTNNNNNAGG 1 cut(s) 1050
BstF5I GGATG 1 cut(s) 1468
BstFNI CGCG 2 cut(s) 26, 913
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 4 cut(s) 26, 282, 438, 913
BstKTI GATC 6 cut(s) 159, 484, 598, 1064, 1132, 1516
BstMAI GTCTC 3 cut(s) 80, 1142, 1707
BstMBI GATC 6 cut(s) 156, 481, 595, 1061, 1129, 1513
BstMCI CGRYCG 2 cut(s) 178, 767
BstMWI GCNNNNNNNGC 9 cut(s) 32, 230, 331, 667, 917, 1486, 1502, 1544, 1574
BstNI CCWGG 4 cut(s) 387, 468, 1059, 1251
BstNSI RCATGY 4 cut(s) 620, 996, 1442, 1634
BstPAI GACNNNNGTC 1 cut(s) 140
BstSCI CCNGG 5 cut(s) 159, 385, 466, 1057, 1249
BstSFI CTRYAG 1 cut(s) 332
BstUI CGCG 2 cut(s) 26, 913
BstV1I GCAGC 3 cut(s) 44, 274, 277
BstV2I GAAGAC 2 cut(s) 45, 786
BstX2I RGATCY 1 cut(s) 595
BstXI CCANNNNNNTGG 1 cut(s) 1207
BstYI RGATCY 1 cut(s) 595
BstZI CGGCCG 1 cut(s) 175
Bsu15I ATCGAT 1 cut(s) 1344
BsuI GTATCC 1 cut(s) 1401
BsuRI GGCC 5 cut(s) 8, 81, 177, 872, 1538
BsuTUI ATCGAT 1 cut(s) 1344
BtgI CCRYGG 1 cut(s) 1582
BtsCI GGATG 1 cut(s) 1468
BtsI GCAGTG 2 cut(s) 1008, 1572
BtsIMutI CAGTG 3 cut(s) 373, 1008, 1572
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 4 cut(s) 260, 918, 1482, 1695
CaiI CAGNNNCTG 1 cut(s) 803
CciI TCATGA 1 cut(s) 340
CfoI GCGC 4 cut(s) 26, 282, 438, 913
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 3 cut(s) 131, 871, 1055
ClaI ATCGAT 1 cut(s) 1344
CseI GACGC 1 cut(s) 624
Csp6I GTAC 4 cut(s) 242, 291, 899, 923
CspAI ACCGGT 1 cut(s) 730
CspCI CAANNNNNGTGG 2 cut(s) 610, 645
CviAII CATG 9 cut(s) 341, 617, 903, 993, 1109, 1370, 1439, 1631, 1764
CviQI GTAC 4 cut(s) 242, 291, 899, 923
DdeI CTNAG 4 cut(s) 254, 721, 882, 1085
DpnI GATC 6 cut(s) 158, 483, 597, 1063, 1131, 1515
DpnII GATC 6 cut(s) 156, 481, 595, 1061, 1129, 1513
DraI TTTAAA 1 cut(s) 1156
EaeI YGGCCR 3 cut(s) 6, 175, 1536
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 4 cut(s) 1179, 1589, 1697, 1703
EarI CTCTTC 4 cut(s) 1179, 1589, 1697, 1703
EclXI CGGCCG 1 cut(s) 175
Eco130I CCWWGG 3 cut(s) 621, 1472, 1668
Eco31I GGTCTC 1 cut(s) 1142
Eco47I GGWCC 2 cut(s) 131, 1055
Eco47III AGCGCT 1 cut(s) 281
Eco52I CGGCCG 1 cut(s) 175
Eco57I CTGAAG 3 cut(s) 780, 1084, 1613
Eco72I CACGTG 1 cut(s) 184
EcoNI CCTNNNNNAGG 1 cut(s) 1050
EcoRII CCWGG 4 cut(s) 385, 466, 1057, 1249
EcoT14I CCWWGG 3 cut(s) 621, 1472, 1668
EcoT22I ATGCAT 1 cut(s) 1549
ErhI CCWWGG 3 cut(s) 621, 1472, 1668
Esp3I CGTCTC 1 cut(s) 1707
FaeI CATG 9 cut(s) 344, 620, 906, 996, 1112, 1373, 1442, 1634, 1767
FalI AAGNNNNNCTT 2 cut(s) 704, 736
FaqI GGGAC 2 cut(s) 220, 1641
FatI CATG 9 cut(s) 340, 616, 902, 992, 1108, 1369, 1438, 1630, 1763
Fnu4HI GCNGC 7 cut(s) 9, 33, 178, 198, 263, 266, 914
FokI GGATG 1 cut(s) 1455
Fsp4HI GCNGC 7 cut(s) 9, 33, 178, 198, 263, 266, 914
FspBI CTAG 4 cut(s) 140, 429, 593, 1382
FspI TGCGCA 1 cut(s) 437
GlaI GCGC 4 cut(s) 25, 281, 437, 912
GluI GCNGC 7 cut(s) 9, 33, 178, 198, 263, 266, 914
GsaI CCCAGC 1 cut(s) 1301
GsuI CTGGAG 1 cut(s) 1233
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 5 cut(s) 8, 81, 177, 872, 1538
HapII CCGG 5 cut(s) 161, 174, 236, 731, 869
HgaI GACGC 1 cut(s) 624
HhaI GCGC 4 cut(s) 26, 282, 438, 913
Hin1II CATG 9 cut(s) 344, 620, 906, 996, 1112, 1373, 1442, 1634, 1767
Hin6I GCGC 4 cut(s) 24, 280, 436, 911
HinP1I GCGC 4 cut(s) 24, 280, 436, 911
HindIII AAGCTT 1 cut(s) 1642
HinfI GANTC 6 cut(s) 136, 274, 800, 880, 1244, 1313
HpaII CCGG 5 cut(s) 161, 174, 236, 731, 869
HphI GGTGA 5 cut(s) 56, 202, 416, 1313, 1598
Hpy166II GTNNAC 4 cut(s) 244, 1185, 1456, 1509
Hpy188I TCNGA 9 cut(s) 135, 273, 286, 657, 799, 805, 885, 967, 1066
Hpy188III TCNNGA 7 cut(s) 110, 253, 341, 736, 1053, 1147, 1444
Hpy8I GTNNAC 4 cut(s) 244, 1185, 1456, 1509
Hpy99I CGWCG 2 cut(s) 205, 319
HpyAV CCTTC 7 cut(s) 92, 418, 465, 826, 1108, 1674, 1720
HpyCH4III ACNGT 5 cut(s) 44, 220, 368, 1239, 1583
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 9 cut(s) 32, 230, 331, 667, 917, 1486, 1502, 1544, 1574
HpyF3I CTNAG 4 cut(s) 254, 721, 882, 1085
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 9 cut(s) 344, 620, 906, 996, 1112, 1373, 1442, 1634, 1767
HspAI GCGC 4 cut(s) 24, 280, 436, 911
Kzo9I GATC 6 cut(s) 156, 481, 595, 1061, 1129, 1513
LguI GCTCTTC 1 cut(s) 1179
LmnI GCTCC 3 cut(s) 238, 287, 1120
Lsp1109I GCAGC 3 cut(s) 44, 274, 277
LweI GCATC 5 cut(s) 750, 952, 988, 1079, 1453
MaeI CTAG 4 cut(s) 140, 429, 593, 1382
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 357, 1104
MalI GATC 6 cut(s) 158, 483, 597, 1063, 1131, 1515
MboI GATC 6 cut(s) 156, 481, 595, 1061, 1129, 1513
MboII GAAGA 9 cut(s) 50, 769, 786, 866, 1146, 1166, 1606, 1714, 1720
MfeI CAATTG 2 cut(s) 875, 1335
MflI RGATCY 1 cut(s) 595
MlsI TGGCCA 1 cut(s) 1538
MluNI TGGCCA 1 cut(s) 1538
MlyI GAGTC 3 cut(s) 130, 794, 874
MmeI TCCRAC 2 cut(s) 158, 459
Mox20I TGGCCA 1 cut(s) 1538
Mph1103I ATGCAT 1 cut(s) 1549
MscI TGGCCA 1 cut(s) 1538
MseI TTAA 6 cut(s) 894, 1025, 1071, 1155, 1652, 1752
MslI CAYNNNNRTG 1 cut(s) 1584
Msp20I TGGCCA 1 cut(s) 1538
MspCI CTTAAG 1 cut(s) 1070
MspI CCGG 5 cut(s) 161, 174, 236, 731, 869
MspR9I CCNGG 5 cut(s) 161, 387, 468, 1059, 1251
MunI CAATTG 2 cut(s) 875, 1335
Mva1269I GAATGC 2 cut(s) 199, 1549
MvaI CCWGG 4 cut(s) 387, 468, 1059, 1251
MvnI CGCG 2 cut(s) 26, 913
MwoI GCNNNNNNNGC 9 cut(s) 32, 230, 331, 667, 917, 1486, 1502, 1544, 1574
NciI CCSGG 1 cut(s) 161
NdeII GATC 6 cut(s) 156, 481, 595, 1061, 1129, 1513
NlaIII CATG 9 cut(s) 344, 620, 906, 996, 1112, 1373, 1442, 1634, 1767
NlaIV GGNNCC 3 cut(s) 132, 234, 816
NmeAIII GCCGAG 3 cut(s) 35, 57, 1273
NsbI TGCGCA 1 cut(s) 437
NsiI ATGCAT 1 cut(s) 1549
NspI RCATGY 4 cut(s) 620, 996, 1442, 1634
OliI CACNNNNGTG 1 cut(s) 1584
PagI TCATGA 1 cut(s) 340
PciI ACATGT 3 cut(s) 992, 1438, 1630
PciSI GCTCTTC 1 cut(s) 1179
PctI GAATGC 2 cut(s) 199, 1549
PfeI GAWTC 3 cut(s) 274, 1244, 1313
PflMI CCANNNNNTGG 2 cut(s) 187, 1427
PfoI TCCNGGA 1 cut(s) 466
PinAI ACCGGT 1 cut(s) 730
PkrI GCNGC 7 cut(s) 10, 34, 179, 199, 264, 267, 915
PleI GAGTC 3 cut(s) 130, 794, 874
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
PpsI GAGTC 3 cut(s) 130, 794, 874
Ppu21I YACGTR 1 cut(s) 184
PscI ACATGT 3 cut(s) 992, 1438, 1630
PshAI GACNNNNGTC 1 cut(s) 140
PsiI TTATAA 1 cut(s) 861
Psp6I CCWGG 4 cut(s) 385, 466, 1057, 1249
PspCI CACGTG 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 1297
PspGI CCWGG 4 cut(s) 385, 466, 1057, 1249
PspN4I GGNNCC 3 cut(s) 132, 234, 816
PspPI GGNCC 3 cut(s) 131, 871, 1055
PstI CTGCAG 1 cut(s) 336
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 4 cut(s) 243, 292, 900, 924
RsaNI GTAC 4 cut(s) 242, 291, 899, 923
RseI CAYNNNNRTG 1 cut(s) 1584
SapI GCTCTTC 1 cut(s) 1179
SaqAI TTAA 6 cut(s) 894, 1025, 1071, 1155, 1652, 1752
SatI GCNGC 7 cut(s) 9, 33, 178, 198, 263, 266, 914
Sau3AI GATC 6 cut(s) 156, 481, 595, 1061, 1129, 1513
Sau96I GGNCC 3 cut(s) 131, 871, 1055
SchI GAGTC 3 cut(s) 130, 794, 874
ScrFI CCNGG 5 cut(s) 161, 387, 468, 1059, 1251
SfaNI GCATC 5 cut(s) 750, 952, 988, 1079, 1453
SfcI CTRYAG 1 cut(s) 332
SinI GGWCC 2 cut(s) 131, 1055
SmiMI CAYNNNNRTG 1 cut(s) 1584
SmlI CTYRAG 2 cut(s) 70, 1070
SmoI CTYRAG 2 cut(s) 70, 1070
SsiI CCGC 7 cut(s) 9, 178, 197, 523, 763, 818, 913
SspI AATATT 2 cut(s) 824, 1320
SspMI CTAG 4 cut(s) 140, 429, 593, 1382
StyD4I CCNGG 5 cut(s) 159, 385, 466, 1057, 1249
StyI CCWWGG 3 cut(s) 621, 1472, 1668
TaaI ACNGT 5 cut(s) 44, 220, 368, 1239, 1583
TaiI ACGT 1 cut(s) 186
TaqI TCGA 6 cut(s) 537, 608, 767, 1132, 1146, 1344
TatI WGTACW 2 cut(s) 241, 922
TauI GCSGC 4 cut(s) 11, 180, 200, 916
TfiI GAWTC 3 cut(s) 274, 1244, 1313
Tru1I TTAA 6 cut(s) 894, 1025, 1071, 1155, 1652, 1752
Tru9I TTAA 6 cut(s) 894, 1025, 1071, 1155, 1652, 1752
TscAI CASTG 3 cut(s) 380, 1008, 1579
TseI GCWGC 3 cut(s) 32, 262, 265
TspDTI ATGAA 5 cut(s) 329, 555, 705, 867, 1751
TspRI CASTG 3 cut(s) 380, 1008, 1579
Van91I CCANNNNNTGG 2 cut(s) 187, 1427
Vha464I CTTAAG 1 cut(s) 1070
VpaK11BI GGWCC 2 cut(s) 131, 1055
XagI CCTNNNNNAGG 1 cut(s) 1050
XapI RAATTY 7 cut(s) 517, 644, 650, 664, 776, 1079, 1599
XceI RCATGY 4 cut(s) 620, 996, 1442, 1634
XspI CTAG 4 cut(s) 140, 429, 593, 1382
Zsp2I ATGCAT 1 cut(s) 1549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.