Rorug04G0427700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000082
Physical Location & Seq
Forward (+)
58588971 .. 58591188
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0427700.1

Sequence Viewer

Length: 897 bp
ATGTCTCTAACCGGAAATATCACTGCAACTTTCTTCCTCTTCTTTCTCGTCAATCTCTCCTTCTTCACATCCCCGTCGTCCTCCGCAACCGACACGTTCATCTACGGTGGTTGCTCCCAGCTCAAGTTTTCCCCGGGCTCGCCGTACGAGATGAAGCTCAACTCCATATTGGCCTCCGTGGTCAACTCGGCCATGTTCACCACTTACAACAACTTCACGGTCCCCGGTTCGTCGGGCACTGCGGACACGCTCTACGGCGTGTTCCAGTGCCGCGGCGACTTGAGCGGCAATGACTGCGCGCAGTGCGTGGCGCGTGCAGTCAGCCAGCTAGGCACGCTCTGCCTGGACGCGTGCGGCGGCGCGTTGCAGCTGGACGGGTGCTTCGTCAAGTACGACAACGCCACTTTCTTGGGGGTGGAGGACAAGACGGTGGTGATGAAGAAGTGTGGGCCGTCGAGTGGGTATGACTCGGAGGGGTTGACCAGGCGGGATGCTGTGCTGGCTTACCTCGGGACCAGTGATGGGGCCTACCGGCCGTTCAGGGTGAGTGGCGCCGGAAATGTCCAGGGTGTGGCGCAGTGCGTCGGGGACTTGAGTCCGAGCGAGTGCCAGGATTGTCTGTCCGACGCCGTAGGGCAGCTGAGGGCGGGGTGTGGGACCAGCACGTGGGGGGACTTGTTCTTGGCCAAGTGCTACGCGCGCTACTCGGAAGGTGGATATCACTCGCAGGGCCATGATCACAATGACGACGACGATGACGACGATGATGATCTTGATAAGACGCTTGCAATACTGATTGGAATCATAGCAGCAGTTGCACTGATCGTCGTATTTCTTTCTTACTTCAGAAAATATTTGTGTGGAGATGAGTGTGGAGATGAAAAAGGTGGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

31.59

Weight (kDa)

4.42

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 38 - 133 2.2e-18 Salt stress response/antifungal
Stress-antifung PF01657 180 - 237 8.7e-10 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 551
AccB7I CCANNNNNTGG 2 cut(s) 571, 666
AccBSI CCGCTC 1 cut(s) 285
AccII CGCG 7 cut(s) 273, 299, 313, 350, 362, 698, 700
AciI CCGC 9 cut(s) 84, 242, 271, 273, 285, 354, 357, 487, 647
AcoI YGGCCR 3 cut(s) 189, 533, 684
AcuI CTGAAG 1 cut(s) 829
AcvI CACGTG 1 cut(s) 666
AcyI GRCGYC 2 cut(s) 552, 627
AfaI GTAC 2 cut(s) 146, 392
AfiI CCNNNNNNNGG 4 cut(s) 458, 522, 571, 666
AflIII ACRYGT 2 cut(s) 93, 348
AjnI CCWGG 4 cut(s) 342, 482, 564, 609
AluBI AGCT 5 cut(s) 121, 157, 328, 370, 640
AluI AGCT 5 cut(s) 121, 157, 328, 370, 640
Alw26I GTCTC 1 cut(s) 9
Ama87I CYCGRG 2 cut(s) 133, 509
AoxI GGCC 7 cut(s) 171, 189, 449, 525, 533, 684, 730
ApeKI GCWGC 3 cut(s) 367, 637, 809
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AspLEI GCGC 8 cut(s) 299, 301, 313, 362, 554, 577, 700, 702
AspS9I GGNCC 6 cut(s) 220, 449, 513, 525, 657, 730
AsuC2I CCSGG 3 cut(s) 134, 135, 225
AsuHPI GGTGA 3 cut(s) 190, 445, 556
AvaI CYCGRG 2 cut(s) 133, 509
AvaII GGWCC 3 cut(s) 220, 513, 657
BaeGI GKGCMC 1 cut(s) 239
BalI TGGCCA 1 cut(s) 686
BanI GGYRCC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 140
BbrPI CACGTG 1 cut(s) 666
BbvCI CCTCAGC 1 cut(s) 641
BbvI GCAGC 3 cut(s) 379, 649, 821
BccI CCATC 1 cut(s) 515
BceAI ACGGC 5 cut(s) 127, 271, 436, 520, 614
BciT130I CCWGG 4 cut(s) 344, 484, 566, 611
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 3 cut(s) 134, 135, 225
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 555
BglI GCCNNNNNGGC 1 cut(s) 330
BisI GCNGC 8 cut(s) 271, 274, 286, 355, 358, 368, 638, 810
BlsI GCNGC 8 cut(s) 272, 275, 287, 356, 359, 369, 639, 811
Bme1390I CCNGG 7 cut(s) 134, 135, 225, 344, 484, 566, 611
Bme18I GGWCC 3 cut(s) 220, 513, 657
BmeT110I CYCGRG 2 cut(s) 133, 509
BmgT120I GGNCC 6 cut(s) 220, 449, 513, 525, 657, 730
BmiI GGNNCC 5 cut(s) 222, 514, 526, 553, 658
BmrFI CCNGG 7 cut(s) 134, 135, 225, 344, 484, 566, 611
BmsI GCATC 1 cut(s) 481
BoxI GACNNNNGTC 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 641
BpuEI CTTGAG 3 cut(s) 107, 301, 613
BpuMI CCSGG 3 cut(s) 134, 135, 225
BsaAI YACGTR 1 cut(s) 666
BsaBI GATNNNNATC 2 cut(s) 768, 800
BsaHI GRCGYC 2 cut(s) 552, 627
BsaJI CCNNGG 7 cut(s) 132, 133, 177, 223, 271, 508, 565
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 4 cut(s) 458, 522, 571, 666
Bse118I RCCGGY 1 cut(s) 531
Bse1I ACTGG 2 cut(s) 265, 516
Bse3DI GCAATG 1 cut(s) 295
Bse8I GATNNNNATC 2 cut(s) 768, 800
BseBI CCWGG 4 cut(s) 344, 484, 566, 611
BseDI CCNNGG 7 cut(s) 132, 133, 177, 223, 271, 508, 565
BseGI GGATG 2 cut(s) 68, 496
BseJI GATNNNNATC 2 cut(s) 768, 800
BseLI CCNNNNNNNGG 4 cut(s) 458, 522, 571, 666
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 632
BseNI ACTGG 2 cut(s) 265, 516
BsePI GCGCGC 2 cut(s) 297, 698
BseSI GKGCMC 1 cut(s) 239
BseX3I CGGCCG 1 cut(s) 533
BseXI GCAGC 3 cut(s) 379, 649, 821
BseYI CCCAGC 1 cut(s) 117
BsgI GTGCAG 1 cut(s) 336
Bsh1236I CGCG 7 cut(s) 273, 299, 313, 350, 362, 698, 700
Bsh1285I CGRYCG 1 cut(s) 536
BshFI GGCC 7 cut(s) 173, 191, 451, 527, 535, 686, 732
BshNI GGYRCC 1 cut(s) 551
BsiEI CGRYCG 1 cut(s) 536
BsiHKCI CYCGRG 2 cut(s) 133, 509
BsiSI CCGG 5 cut(s) 12, 134, 225, 532, 555
BsiWI CGTACG 1 cut(s) 144
BslFI GGGAC 5 cut(s) 206, 526, 602, 670, 686
BslI CCNNNNNNNGG 4 cut(s) 458, 522, 571, 666
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 5 cut(s) 206, 526, 602, 670, 686
BsnI GGCC 7 cut(s) 173, 191, 451, 527, 535, 686, 732
BsoBI CYCGRG 2 cut(s) 133, 509
Bsp1286I GDGCHC 2 cut(s) 140, 239
Bsp143I GATC 3 cut(s) 736, 769, 822
BspACI CCGC 9 cut(s) 84, 242, 271, 273, 285, 354, 357, 487, 647
BspANI GGCC 7 cut(s) 173, 191, 451, 527, 535, 686, 732
BspCNI CTCAG 1 cut(s) 633
BspFNI CGCG 7 cut(s) 273, 299, 313, 350, 362, 698, 700
BspLI GGNNCC 5 cut(s) 222, 514, 526, 553, 658
BspT107I GGYRCC 1 cut(s) 551
BsrBI CCGCTC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 531
BsrI ACTGG 2 cut(s) 265, 516
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 7 cut(s) 132, 133, 177, 223, 271, 508, 565
BssHII GCGCGC 2 cut(s) 297, 698
BssMI GATC 3 cut(s) 736, 769, 822
BssNI GRCGYC 2 cut(s) 552, 627
Bst2UI CCWGG 4 cut(s) 344, 484, 566, 611
Bst4CI ACNGT 3 cut(s) 107, 220, 430
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 2 cut(s) 552, 627
BstAPI GCANNNNNTGC 3 cut(s) 294, 339, 815
BstBAI YACGTR 1 cut(s) 666
BstC8I GCNNGC 9 cut(s) 140, 299, 315, 326, 335, 352, 501, 700, 786
BstDEI CTNAG 1 cut(s) 641
BstDSI CCRYGG 2 cut(s) 177, 271
BstF5I GGATG 2 cut(s) 68, 496
BstFNI CGCG 7 cut(s) 273, 299, 313, 350, 362, 698, 700
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 8 cut(s) 299, 301, 313, 362, 554, 577, 700, 702
BstKTI GATC 3 cut(s) 739, 772, 825
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 736, 769, 822
BstMCI CGRYCG 1 cut(s) 536
BstMWI GCNNNNNNNGC 9 cut(s) 282, 294, 303, 330, 334, 339, 500, 699, 815
BstNI CCWGG 4 cut(s) 344, 484, 566, 611
BstPAI GACNNNNGTC 1 cut(s) 594
BstSCI CCNGG 7 cut(s) 132, 133, 223, 342, 482, 564, 609
BstSLI GKGCMC 1 cut(s) 239
BstUI CGCG 7 cut(s) 273, 299, 313, 350, 362, 698, 700
BstV1I GCAGC 3 cut(s) 379, 649, 821
BstXI CCANNNNNNTGG 1 cut(s) 409
BstZI CGGCCG 1 cut(s) 533
BsuRI GGCC 7 cut(s) 173, 191, 451, 527, 535, 686, 732
BtgI CCRYGG 2 cut(s) 177, 271
BtsCI GGATG 2 cut(s) 68, 496
BtsI GCAGTG 4 cut(s) 21, 237, 308, 584
BtsIMutI CAGTG 7 cut(s) 21, 237, 272, 308, 523, 584, 818
Cac8I GCNNGC 9 cut(s) 140, 299, 315, 326, 335, 352, 501, 700, 786
CfoI GCGC 8 cut(s) 299, 301, 313, 362, 554, 577, 700, 702
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 6 cut(s) 220, 449, 513, 525, 657, 730
Cfr42I CCGCGG 1 cut(s) 274
Cfr9I CCCGGG 1 cut(s) 133
CseI GACGC 4 cut(s) 356, 571, 635, 790
Csp6I GTAC 2 cut(s) 145, 391
CviAII CATG 2 cut(s) 193, 734
CviQI GTAC 2 cut(s) 145, 391
DdeI CTNAG 1 cut(s) 641
DinI GGCGCC 1 cut(s) 553
DpnI GATC 3 cut(s) 738, 771, 824
DpnII GATC 3 cut(s) 736, 769, 822
EaeI YGGCCR 3 cut(s) 189, 533, 684
EagI CGGCCG 1 cut(s) 533
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EclXI CGGCCG 1 cut(s) 533
Eco24I GRGCYC 1 cut(s) 140
Eco32I GATATC 1 cut(s) 719
Eco47I GGWCC 3 cut(s) 220, 513, 657
Eco52I CGGCCG 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 829
Eco72I CACGTG 1 cut(s) 666
Eco88I CYCGRG 2 cut(s) 133, 509
EcoO109I RGGNCCY 1 cut(s) 525
EcoRII CCWGG 4 cut(s) 342, 482, 564, 609
EcoRV GATATC 1 cut(s) 719
EcoT38I GRGCYC 1 cut(s) 140
EgeI GGCGCC 1 cut(s) 553
EheI GGCGCC 1 cut(s) 553
FaeI CATG 2 cut(s) 196, 737
FaiI YATR 5 cut(s) 167, 194, 465, 735, 806
FaqI GGGAC 5 cut(s) 206, 526, 602, 670, 686
FatI CATG 2 cut(s) 192, 733
FauI CCCGC 2 cut(s) 480, 640
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 8 cut(s) 271, 274, 286, 355, 358, 368, 638, 810
FokI GGATG 2 cut(s) 55, 503
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 8 cut(s) 271, 274, 286, 355, 358, 368, 638, 810
FspBI CTAG 1 cut(s) 329
GlaI GCGC 8 cut(s) 298, 300, 312, 361, 553, 576, 699, 701
GluI GCNGC 8 cut(s) 271, 274, 286, 355, 358, 368, 638, 810
GsaI CCCAGC 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 7 cut(s) 173, 191, 451, 527, 535, 686, 732
HapII CCGG 5 cut(s) 12, 134, 225, 532, 555
HgaI GACGC 4 cut(s) 356, 571, 635, 790
HhaI GCGC 8 cut(s) 299, 301, 313, 362, 554, 577, 700, 702
Hin1I GRCGYC 2 cut(s) 552, 627
Hin1II CATG 2 cut(s) 196, 737
Hin6I GCGC 8 cut(s) 297, 299, 311, 360, 552, 575, 698, 700
HinP1I GCGC 8 cut(s) 297, 299, 311, 360, 552, 575, 698, 700
HincII GTYRAC 2 cut(s) 184, 480
HindII GTYRAC 2 cut(s) 184, 480
HinfI GANTC 3 cut(s) 467, 595, 801
HpaII CCGG 5 cut(s) 12, 134, 225, 532, 555
HphI GGTGA 3 cut(s) 190, 445, 556
Hpy166II GTNNAC 3 cut(s) 184, 198, 480
Hpy188I TCNGA 5 cut(s) 472, 600, 625, 709, 848
Hpy188III TCNNGA 2 cut(s) 511, 773
Hpy8I GTNNAC 3 cut(s) 184, 198, 480
Hpy99I CGWCG 9 cut(s) 79, 235, 457, 587, 629, 752, 755, 764, 830
HpyAV CCTTC 2 cut(s) 70, 704
HpyCH4III ACNGT 3 cut(s) 107, 220, 430
HpyCH4IV ACGT 2 cut(s) 95, 665
HpyCH4V TGCA 5 cut(s) 26, 317, 367, 788, 818
HpyF10VI GCNNNNNNNGC 9 cut(s) 282, 294, 303, 330, 334, 339, 500, 699, 815
HpyF3I CTNAG 1 cut(s) 641
HpySE526I ACGT 2 cut(s) 95, 665
Hsp92I GRCGYC 2 cut(s) 552, 627
Hsp92II CATG 2 cut(s) 196, 737
HspAI GCGC 8 cut(s) 297, 299, 311, 360, 552, 575, 698, 700
KasI GGCGCC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 736
KspI CCGCGG 1 cut(s) 274
Kzo9I GATC 3 cut(s) 736, 769, 822
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 3 cut(s) 379, 649, 821
LweI GCATC 1 cut(s) 481
MaeI CTAG 1 cut(s) 329
MaeII ACGT 2 cut(s) 95, 665
MalI GATC 3 cut(s) 738, 771, 824
MbiI CCGCTC 1 cut(s) 285
MboI GATC 3 cut(s) 736, 769, 822
MboII GAAGA 4 cut(s) 25, 31, 55, 451
MhlI GDGCHC 2 cut(s) 140, 239
MlsI TGGCCA 1 cut(s) 686
MluI ACGCGT 1 cut(s) 348
MluNI TGGCCA 1 cut(s) 686
Mly113I GGCGCC 1 cut(s) 552
MlyI GAGTC 2 cut(s) 461, 604
MmeI TCCRAC 1 cut(s) 648
MnlI CCTC 7 cut(s) 47, 91, 184, 412, 466, 518, 636
Mox20I TGGCCA 1 cut(s) 686
MscI TGGCCA 1 cut(s) 686
Msp20I TGGCCA 1 cut(s) 686
MspA1I CMGCKG 3 cut(s) 273, 370, 640
MspI CCGG 5 cut(s) 12, 134, 225, 532, 555
MspR9I CCNGG 7 cut(s) 134, 135, 225, 344, 484, 566, 611
MvaI CCWGG 4 cut(s) 344, 484, 566, 611
MvnI CGCG 7 cut(s) 273, 299, 313, 350, 362, 698, 700
MwoI GCNNNNNNNGC 9 cut(s) 282, 294, 303, 330, 334, 339, 500, 699, 815
NarI GGCGCC 1 cut(s) 552
NciI CCSGG 3 cut(s) 134, 135, 225
NdeII GATC 3 cut(s) 736, 769, 822
NlaIII CATG 2 cut(s) 196, 737
NlaIV GGNNCC 5 cut(s) 222, 514, 526, 553, 658
NmeAIII GCCGAG 1 cut(s) 167
PauI GCGCGC 2 cut(s) 297, 698
PcsI WCGNNNNNNNCGW 4 cut(s) 381, 390, 756, 759
PfeI GAWTC 1 cut(s) 801
Pfl23II CGTACG 1 cut(s) 144
PflMI CCANNNNNTGG 2 cut(s) 571, 666
PkrI GCNGC 8 cut(s) 272, 275, 287, 356, 359, 369, 639, 811
PleI GAGTC 2 cut(s) 461, 603
PluTI GGCGCC 1 cut(s) 555
PmaCI CACGTG 1 cut(s) 666
PmlI CACGTG 1 cut(s) 666
PpsI GAGTC 2 cut(s) 461, 603
Ppu21I YACGTR 1 cut(s) 666
PshAI GACNNNNGTC 1 cut(s) 594
Psp6I CCWGG 4 cut(s) 342, 482, 564, 609
PspCI CACGTG 1 cut(s) 666
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 4 cut(s) 342, 482, 564, 609
PspLI CGTACG 1 cut(s) 144
PspN4I GGNNCC 5 cut(s) 222, 514, 526, 553, 658
PspPI GGNCC 6 cut(s) 220, 449, 513, 525, 657, 730
PteI GCGCGC 2 cut(s) 297, 698
PvuII CAGCTG 2 cut(s) 370, 640
RsaI GTAC 2 cut(s) 146, 392
RsaNI GTAC 2 cut(s) 145, 391
SacII CCGCGG 1 cut(s) 274
SatI GCNGC 8 cut(s) 271, 274, 286, 355, 358, 368, 638, 810
Sau3AI GATC 3 cut(s) 736, 769, 822
Sau96I GGNCC 6 cut(s) 220, 449, 513, 525, 657, 730
SchI GAGTC 2 cut(s) 461, 604
ScrFI CCNGG 7 cut(s) 134, 135, 225, 344, 484, 566, 611
SduI GDGCHC 2 cut(s) 140, 239
SfaNI GCATC 1 cut(s) 481
SfoI GGCGCC 1 cut(s) 553
Sfr303I CCGCGG 1 cut(s) 274
SgrBI CCGCGG 1 cut(s) 274
SinI GGWCC 3 cut(s) 220, 513, 657
SmaI CCCGGG 1 cut(s) 135
SmlI CTYRAG 3 cut(s) 122, 280, 592
SmoI CTYRAG 3 cut(s) 122, 280, 592
SsiI CCGC 9 cut(s) 84, 242, 271, 273, 285, 354, 357, 487, 647
SspDI GGCGCC 1 cut(s) 551
SspI AATATT 1 cut(s) 854
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 7 cut(s) 132, 133, 223, 342, 482, 564, 609
TaaI ACNGT 3 cut(s) 107, 220, 430
TaiI ACGT 2 cut(s) 98, 668
TaqI TCGA 1 cut(s) 455
TauI GCSGC 5 cut(s) 273, 276, 288, 357, 360
TfiI GAWTC 1 cut(s) 801
TscAI CASTG 7 cut(s) 28, 244, 272, 308, 523, 584, 825
TseI GCWGC 3 cut(s) 367, 637, 809
TspDTI ATGAA 4 cut(s) 88, 167, 452, 894
TspGWI ACGGA 1 cut(s) 166
TspMI CCCGGG 1 cut(s) 133
TspRI CASTG 7 cut(s) 28, 244, 272, 308, 523, 584, 825
Van91I CCANNNNNTGG 2 cut(s) 571, 666
VpaK11BI GGWCC 3 cut(s) 220, 513, 657
XmaI CCCGGG 1 cut(s) 133
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.