Rw5G049010

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
85046589 .. 85047179
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G049010.1

Sequence Viewer

Length: 591 bp
ATGGCGGAGCACATACCTGAAGATGTTATAGTAAAAATCTTCAAGAGGTTGCCCATCAAATCCTTAATCCGCTTCACCTCCCTTTCGAAGCGCTGGCGCTTCATCATACTCCGCGACCCTCAGTTCGCCACATCCCAGTACCAAATCGCTTCCGACAACAACAAAAGTGTATGTTTCCGTACCTGCTTTGATTGTGAATTCTTCGAATCGCTAAACTTGCAAACGACGACGTCGGCTTTGACAAATCTTCGCTACCCATTCAAGCAACCAGACAGTATGGTTTTCATACACTCCTCATGCCGTGGTTTGGTATTTGCAACTTTTAAAGGGCAGGGAATAGTAGCGAGGTATATATGGAACCCATCAACTGGGTTCTTCAAAAAACTACCTGATCCAGGTGTTCAAACAGAGTTCCAAGTCTTCACTGGTTTTGGGTATATCTCAGCGACCGACGATTACAAGATTCTCATAGCCACCTCTAAACTTGGGAAGAAGAGAGGGGAAGCCAAGATCCGCATCTTCTCGTCGAAATCCAACTCTTGGAAAAAGGATTCAAGATTCCCAATATTCCTTCTTGTCAAAGACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

196

Amino Acids

22.61

Weight (kDa)

9.84

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 3 - 39 6.2e-07 F-box-like
F-box PF00646 4 - 39 4.5e-09 F-box domain
FBA_3 PF08268 57 - 183 2.3e-10 F-box associated beta propeller domain
FBA_1 PF07734 89 - 183 3.8e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 191
AccB7I CCANNNNNTGG 2 cut(s) 368, 540
AccII CGCG 1 cut(s) 114
AciI CCGC 4 cut(s) 5, 70, 112, 514
AclWI GGATC 2 cut(s) 386, 505
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 2 cut(s) 140, 181
AfeI AGCGCT 1 cut(s) 92
AfiI CCNNNNNNNGG 4 cut(s) 307, 368, 395, 540
AgsI TTSAA 5 cut(s) 43, 262, 379, 404, 555
AjnI CCWGG 1 cut(s) 394
Alw21I GWGCWC 1 cut(s) 12
AlwI GGATC 2 cut(s) 386, 505
Aor51HI AGCGCT 1 cut(s) 92
ApoI RAATTY 1 cut(s) 197
ArsI GACNNNNNNTTYG 4 cut(s) 107, 139, 220, 252
AspLEI GCGC 2 cut(s) 93, 99
AsuHPI GGTGA 1 cut(s) 67
AsuII TTCGAA 2 cut(s) 86, 204
BbsI GAAGAC 1 cut(s) 412
Bbv12I GWGCWC 1 cut(s) 12
BccI CCATC 2 cut(s) 62, 370
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 1 cut(s) 396
BfoI RGCGCY 2 cut(s) 94, 100
BfuAI ACCTGC 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 396
BmrI ACTGGG 2 cut(s) 130, 378
BmsI GCATC 1 cut(s) 525
BmuI ACTGGG 2 cut(s) 130, 378
BpiI GAAGAC 1 cut(s) 412
Bpu14I TTCGAA 2 cut(s) 86, 204
BsaBI GATNNNNATC 1 cut(s) 515
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 4 cut(s) 307, 368, 395, 540
Bse1I ACTGG 3 cut(s) 136, 373, 430
Bse8I GATNNNNATC 1 cut(s) 515
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 131
BseJI GATNNNNATC 1 cut(s) 515
BseLI CCNNNNNNNGG 4 cut(s) 307, 368, 395, 540
BseMII CTCAG 2 cut(s) 134, 456
BseNI ACTGG 3 cut(s) 136, 373, 430
BseRI GAGGAG 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 450
BsiEI CGRYCG 1 cut(s) 450
BsiHKAI GWGCWC 1 cut(s) 12
BslI CCNNNNNNNGG 4 cut(s) 307, 368, 395, 540
Bsp119I TTCGAA 2 cut(s) 86, 204
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 2 cut(s) 391, 510
BspACI CCGC 4 cut(s) 5, 70, 112, 514
BspCNI CTCAG 2 cut(s) 133, 455
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 359
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 2 cut(s) 386, 505
BspT104I TTCGAA 2 cut(s) 86, 204
BsrI ACTGG 3 cut(s) 136, 373, 430
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 2 cut(s) 391, 510
BssNI GRCGYC 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 488
BstACI GRCGYC 1 cut(s) 230
BstBI TTCGAA 2 cut(s) 86, 204
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 120, 442
BstDSI CCRYGG 1 cut(s) 301
BstENI CCTNNNNNAGG 1 cut(s) 393
BstF5I GGATG 1 cut(s) 131
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 2 cut(s) 94, 100
BstHHI GCGC 2 cut(s) 93, 99
BstKTI GATC 2 cut(s) 394, 513
BstMBI GATC 2 cut(s) 391, 510
BstMCI CGRYCG 1 cut(s) 450
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 394
BstUI CGCG 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 412
BstX2I RGATCY 1 cut(s) 510
BstYI RGATCY 1 cut(s) 510
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 423
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 95
CfoI GCGC 2 cut(s) 93, 99
Csp6I GTAC 2 cut(s) 139, 180
CviAII CATG 1 cut(s) 297
CviJI RGCY 3 cut(s) 236, 473, 506
CviKI_1 RGCY 3 cut(s) 236, 473, 506
CviQI GTAC 2 cut(s) 139, 180
DdeI CTNAG 2 cut(s) 120, 442
DpnI GATC 2 cut(s) 393, 512
DpnII GATC 2 cut(s) 391, 510
DraI TTTAAA 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
EciI GGCGGA 1 cut(s) 20
Eco47III AGCGCT 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 39
EcoNI CCTNNNNNAGG 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 394
FaeI CATG 1 cut(s) 300
FatI CATG 1 cut(s) 296
FokI GGATG 1 cut(s) 118
GlaI GCGC 2 cut(s) 92, 98
HaeII RGCGCY 2 cut(s) 94, 100
HhaI GCGC 2 cut(s) 93, 99
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 1 cut(s) 300
Hin6I GCGC 2 cut(s) 91, 97
HinP1I GCGC 2 cut(s) 91, 97
HinfI GANTC 4 cut(s) 206, 463, 551, 558
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 43, 555
Hpy99I CGWCG 5 cut(s) 229, 232, 235, 455, 529
HpyAV CCTTC 1 cut(s) 581
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 220, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 2 cut(s) 120, 442
HpySE526I ACGT 1 cut(s) 230
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 1 cut(s) 300
HspAI GCGC 2 cut(s) 91, 97
Kzo9I GATC 2 cut(s) 391, 510
LmnI GCTCC 1 cut(s) 7
LweI GCATC 1 cut(s) 525
MaeII ACGT 1 cut(s) 230
MalI GATC 2 cut(s) 393, 512
MboI GATC 2 cut(s) 391, 510
MboII GAAGA 9 cut(s) 31, 32, 193, 239, 367, 412, 502, 505, 511
MflI RGATCY 1 cut(s) 510
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 177, 558
MnlI CCTC 7 cut(s) 39, 88, 129, 304, 339, 487, 491
MseI TTAA 2 cut(s) 65, 324
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 2 cut(s) 391, 510
NlaIII CATG 1 cut(s) 300
NlaIV GGNNCC 1 cut(s) 359
NspV TTCGAA 2 cut(s) 86, 204
PfeI GAWTC 4 cut(s) 206, 463, 551, 558
PflFI GACNNNGTC 1 cut(s) 229
PflMI CCANNNNNTGG 2 cut(s) 368, 540
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 1 cut(s) 359
PsuI RGATCY 1 cut(s) 510
PsyI GACNNNGTC 1 cut(s) 229
RsaI GTAC 2 cut(s) 140, 181
RsaNI GTAC 2 cut(s) 139, 180
SaqAI TTAA 2 cut(s) 65, 324
Sau3AI GATC 2 cut(s) 391, 510
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 1 cut(s) 12
SetI ASST 9 cut(s) 19, 50, 80, 185, 233, 350, 391, 400, 479
SfaNI GCATC 1 cut(s) 525
SfuI TTCGAA 2 cut(s) 86, 204
Sse9I AATT 1 cut(s) 197
SsiI CCGC 4 cut(s) 5, 70, 112, 514
SspI AATATT 1 cut(s) 567
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 233
TaqI TCGA 3 cut(s) 86, 204, 527
TaqII GACCGA 1 cut(s) 464
TasI AATT 1 cut(s) 197
TfiI GAWTC 4 cut(s) 206, 463, 551, 558
Tru1I TTAA 2 cut(s) 65, 324
Tru9I TTAA 2 cut(s) 65, 324
TscAI CASTG 1 cut(s) 430
TspDTI ATGAA 2 cut(s) 91, 274
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 430
Tth111I GACNNNGTC 1 cut(s) 229
Van91I CCANNNNNTGG 2 cut(s) 368, 540
XagI CCTNNNNNAGG 1 cut(s) 393
XapI RAATTY 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
ZraI GACGTC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.