FvH4_3g32390

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000082
Physical Location & Seq
Forward (+)
27674705 .. 27677225
2521 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32390.t2

Sequence Viewer

Length: 474 bp
ATGAGCAATTCTCAAAGTTCAGAGAGGTCACCTGAACCCTCTTATCCTATACTGCCTACGCCACTGGTAGATGGTGAACTTATATATCTCCAGGCTTTTGGAGACAATGTTTGTGTATTTGATTTTGGAAATGTTGATACTGCTGGCTCCATTGATCTGTGGGTGATGAAAAACTATGGCGTGACTGACTCCTGGGCCAAGCTTTTTAACTTAAAGGTTACCAATCAGCATGAGAAGATAGTTTGGTTATGCCCAATCTTGGTGTTGGAAACTGCCACATTTCTGGAGAAAAAGACTATAGAGAGTGATGTGCTCAAGCTGATAAGCAGTAGTCATACCAAAGAGGAGCTTGAAACGCATGTGTGTAGTGGGGATGTAAATCTGATAGACCTGATTCAATATGAAGAGACTCTACTTTGGCTTGGAGTCTCAATATTGGTTCTTCTGTATTTCATTTCTCCAGCTTCCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

158

Amino Acids

17.58

Weight (kDa)

4.41

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 2 cut(s) 353, 398
AjnI CCWGG 2 cut(s) 90, 191
AluBI AGCT 4 cut(s) 202, 319, 349, 464
AluI AGCT 4 cut(s) 202, 319, 349, 464
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 3 cut(s) 96, 401, 433
AoxI GGCC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 3 cut(s) 21, 86, 175
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
Bbv12I GWGCWC 1 cut(s) 315
BccI CCATC 1 cut(s) 65
BciT130I CCWGG 2 cut(s) 92, 193
BcoDI GTCTC 3 cut(s) 96, 401, 433
BfmI CTRYAG 1 cut(s) 297
Bme1390I CCNGG 2 cut(s) 92, 193
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 2 cut(s) 92, 193
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 3 cut(s) 74, 305, 444
BpuEI CTTGAG 1 cut(s) 299
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 2 cut(s) 92, 193
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 379
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 359
BshFI GGCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 3 cut(s) 96, 401, 433
BsnI GGCC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 1 cut(s) 154
BspANI GGCC 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 154
Bst2UI CCWGG 2 cut(s) 92, 193
Bst6I CTCTTC 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 145
BstEII GGTNACC 2 cut(s) 27, 217
BstF5I GGATG 1 cut(s) 379
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 3 cut(s) 96, 401, 433
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 355
BstNI CCWGG 2 cut(s) 92, 193
BstNSI RCATGY 1 cut(s) 362
BstPI GGTNACC 2 cut(s) 27, 217
BstSCI CCNGG 2 cut(s) 90, 191
BstSFI CTRYAG 1 cut(s) 297
BstXI CCANNNNNNTGG 2 cut(s) 98, 283
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 195
CviAII CATG 2 cut(s) 230, 359
CviJI RGCY 8 cut(s) 95, 147, 197, 202, 319, 349, 421, 464
CviKI_1 RGCY 8 cut(s) 95, 147, 197, 202, 319, 349, 421, 464
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco91I GGTNACC 2 cut(s) 27, 217
EcoO65I GGTNACC 2 cut(s) 27, 217
EcoRII CCWGG 2 cut(s) 90, 191
FaeI CATG 2 cut(s) 233, 362
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FatI CATG 2 cut(s) 229, 358
FokI GGATG 1 cut(s) 386
GsuI CTGGAG 3 cut(s) 74, 305, 444
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 2 cut(s) 233, 362
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 4 cut(s) 188, 394, 409, 426
HphI GGTGA 3 cut(s) 21, 86, 175
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 2 cut(s) 22, 384
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 355
Hsp92II CATG 2 cut(s) 233, 362
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 2 cut(s) 152, 346
LpnPI CCDG 9 cut(s) 45, 50, 77, 104, 129, 178, 205, 269, 404
MaeIII GTNAC 3 cut(s) 27, 181, 217
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 247, 416, 434
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 1 cut(s) 7
MlyI GAGTC 3 cut(s) 182, 403, 435
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 3 cut(s) 18, 49, 337
MseI TTAA 2 cut(s) 207, 212
MspR9I CCNGG 2 cut(s) 92, 193
MvaI CCWGG 2 cut(s) 92, 193
MwoI GCNNNNNNNGC 1 cut(s) 355
NdeII GATC 1 cut(s) 154
NlaIII CATG 2 cut(s) 233, 362
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 2 cut(s) 27, 181
NspI RCATGY 1 cut(s) 362
PfeI GAWTC 1 cut(s) 394
PleI GAGTC 3 cut(s) 182, 403, 434
PpsI GAGTC 3 cut(s) 182, 403, 434
Psp6I CCWGG 2 cut(s) 90, 191
PspEI GGTNACC 2 cut(s) 27, 217
PspGI CCWGG 2 cut(s) 90, 191
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 207, 212
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 3 cut(s) 182, 403, 435
ScrFI CCNGG 2 cut(s) 92, 193
SduI GDGCHC 1 cut(s) 315
SetI ASST 8 cut(s) 29, 34, 204, 219, 321, 351, 393, 466
SfcI CTRYAG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 1 cut(s) 7
SspI AATATT 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 90, 191
TasI AATT 1 cut(s) 7
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 2 cut(s) 207, 212
Tru9I TTAA 2 cut(s) 207, 212
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 2 cut(s) 27, 181
Tsp45I GTSAC 2 cut(s) 27, 181
TspDTI ATGAA 3 cut(s) 182, 417, 442
TspRI CASTG 1 cut(s) 69
XceI RCATGY 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.