RchiOBHm_Chr1g0321661

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000082
Physical Location & Seq
Reverse (-)
9142612 .. 9143298
687 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55169

Sequence Viewer

Length: 687 bp
ATGGCGGGAAAGCACATACCGGAAGATATTATAGTGGACATCCTTTCCAGGTTACTTGTCAAATCCCTGATCCGATTCCGCTGTGTTTCAAAACGCTGGCGTTCAATAGTGTCTGATCCACAGTTGGCCACGTTGCAGTTTCAAGTAGCTTTTGAGAAGAAAACTCAGAGTCGCATAATCGTCTTCTACCGTAACGACTCTGACATTGAATCCTTAGACTTGGAGAGGCCGTGGTCTTTGTCTTCAATTAGAAAGCTTACTGGTCCATTCGAGCATCGGGATAGGATCAGTCATGTCGAGGTACTAGGCTCTTGCAATAGTTTGGTATGTGTTGCAACTCCTGGTTCTGTTTTTCCTCTTTACATTTGGAACCCATCAACTGGATTCTCGCTTAAGCTACTTGGTTTTTCCAATAATGAAACCAACTGCTCTCAAATAATCTACTGTGGTTTTGGCTATTTGCCGGCCACTGACGACTACAAAGTTCTGGTGGCCGCATATTCTTGGGATAATGAGGCGGAGACGCTGGAGGTCAAAATCTTCTCGACAAGAACTGGCCTTTGGAAAAGGCTTGAATCACCTTTTAAGTCCTGCCCTAGCTATTTAACTTCGAGACAAGCTATGGTACCTACCATTATGAGATACCCTTATTTACAACTATTTGAACAAAAATTTACAAGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

228

Amino Acids

26.18

Weight (kDa)

8.87

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 42 2.4e-10 F-box domain
F-box-like PF12937 5 - 42 7.4e-10 F-box-like
FBA_3 PF08268 90 - 201 1e-09 F-box associated beta propeller domain
FBA_1 PF07734 95 - 195 5.8e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 625
AccB1I GGYRCC 1 cut(s) 625
AccB7I CCANNNNNTGG 1 cut(s) 380
AciI CCGC 4 cut(s) 5, 79, 495, 518
AclWI GGATC 3 cut(s) 64, 110, 293
AcoI YGGCCR 3 cut(s) 126, 465, 492
AcsI RAATTY 1 cut(s) 671
AfaI GTAC 2 cut(s) 303, 627
AfiI CCNNNNNNNGG 1 cut(s) 380
AflII CTTAAG 1 cut(s) 392
AgsI TTSAA 7 cut(s) 90, 105, 143, 209, 246, 575, 665
AjnI CCWGG 2 cut(s) 47, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 544, 576
AluBI AGCT 5 cut(s) 149, 256, 397, 600, 620
AluI AGCT 5 cut(s) 149, 256, 397, 600, 620
Alw26I GTCTC 2 cut(s) 515, 607
AlwI GGATC 3 cut(s) 64, 110, 293
AoxI GGCC 5 cut(s) 126, 227, 465, 492, 556
ApoI RAATTY 1 cut(s) 671
Asp718I GGTACC 1 cut(s) 625
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 570
AvaII GGWCC 1 cut(s) 263
BalI TGGCCA 1 cut(s) 128
BanI GGYRCC 1 cut(s) 625
BbsI GAAGAC 2 cut(s) 175, 234
BccI CCATC 1 cut(s) 382
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 2 cut(s) 49, 342
BcoDI GTCTC 2 cut(s) 515, 607
BfaI CTAG 2 cut(s) 305, 597
BfrI CTTAAG 1 cut(s) 392
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
Bme1390I CCNGG 2 cut(s) 49, 342
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 371, 627
BmrFI CCNGG 2 cut(s) 49, 342
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 2 cut(s) 175, 234
BpmI CTGGAG 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse118I RCCGGY 1 cut(s) 463
Bse1I ACTGG 3 cut(s) 265, 385, 559
BseBI CCWGG 2 cut(s) 49, 342
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 3 cut(s) 265, 385, 559
BshFI GGCC 5 cut(s) 128, 229, 467, 494, 558
BshNI GGYRCC 1 cut(s) 625
BsiSI CCGG 2 cut(s) 20, 464
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 2 cut(s) 515, 607
BsmBI CGTCTC 1 cut(s) 515
BsnI GGCC 5 cut(s) 128, 229, 467, 494, 558
Bsp143I GATC 3 cut(s) 69, 115, 285
BspACI CCGC 4 cut(s) 5, 79, 495, 518
BspANI GGCC 5 cut(s) 128, 229, 467, 494, 558
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 371, 627
BspPI GGATC 3 cut(s) 64, 110, 293
BspT107I GGYRCC 1 cut(s) 625
BspTI CTTAAG 1 cut(s) 392
BsrFI RCCGGY 1 cut(s) 463
BsrI ACTGG 3 cut(s) 265, 385, 559
BssAI RCCGGY 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 3 cut(s) 69, 115, 285
Bst2UI CCWGG 2 cut(s) 49, 342
Bst4CI ACNGT 3 cut(s) 123, 191, 446
BstAFI CTTAAG 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 98, 465
BstDEI CTNAG 2 cut(s) 165, 214
BstDSI CCRYGG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 39
BstKTI GATC 3 cut(s) 72, 118, 288
BstMAI GTCTC 2 cut(s) 515, 607
BstMBI GATC 3 cut(s) 69, 115, 285
BstNI CCWGG 2 cut(s) 49, 342
BstSCI CCNGG 2 cut(s) 47, 340
BstV2I GAAGAC 2 cut(s) 175, 234
BsuRI GGCC 5 cut(s) 128, 229, 467, 494, 558
BtgI CCRYGG 1 cut(s) 230
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 2 cut(s) 98, 465
Cfr10I RCCGGY 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 532
Csp6I GTAC 2 cut(s) 302, 626
CviAII CATG 1 cut(s) 293
CviQI GTAC 2 cut(s) 302, 626
DdeI CTNAG 2 cut(s) 165, 214
DpnI GATC 3 cut(s) 71, 117, 287
DpnII GATC 3 cut(s) 69, 115, 285
EaeI YGGCCR 3 cut(s) 126, 465, 492
EciI GGCGGA 1 cut(s) 533
Eco47I GGWCC 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 47, 340
Esp3I CGTCTC 1 cut(s) 515
FaeI CATG 1 cut(s) 296
FaiI YATR 8 cut(s) 17, 32, 176, 294, 328, 499, 623, 638
FatI CATG 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 495
FspBI CTAG 2 cut(s) 305, 597
GluI GCNGC 1 cut(s) 495
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 5 cut(s) 128, 229, 467, 494, 558
HapII CCGG 2 cut(s) 20, 464
HgaI GACGC 1 cut(s) 532
Hin1II CATG 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 6 cut(s) 75, 169, 197, 209, 384, 575
HpaII CCGG 2 cut(s) 20, 464
HphI GGTGA 1 cut(s) 570
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 4 cut(s) 74, 115, 168, 202
Hpy188III TCNNGA 3 cut(s) 278, 544, 612
Hpy8I GTNNAC 1 cut(s) 37
HpyCH4III ACNGT 3 cut(s) 123, 191, 446
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 3 cut(s) 136, 315, 335
HpyF3I CTNAG 2 cut(s) 165, 214
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 1 cut(s) 296
KpnI GGTACC 1 cut(s) 629
KroI GCCGGC 1 cut(s) 463
KroNI GCCGGC 1 cut(s) 465
Kzo9I GATC 3 cut(s) 69, 115, 285
LweI GCATC 1 cut(s) 283
MaeI CTAG 2 cut(s) 305, 597
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 51, 191
MalI GATC 3 cut(s) 71, 117, 287
MboI GATC 3 cut(s) 69, 115, 285
MboII GAAGA 5 cut(s) 35, 169, 175, 234, 532
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 2 cut(s) 246, 671
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 2 cut(s) 178, 191
MnlI CCTC 5 cut(s) 219, 292, 366, 508, 523
Mox20I TGGCCA 1 cut(s) 128
MroNI GCCGGC 1 cut(s) 463
MscI TGGCCA 1 cut(s) 128
MseI TTAA 3 cut(s) 393, 585, 605
Msp20I TGGCCA 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 81
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 2 cut(s) 20, 464
MspR9I CCNGG 2 cut(s) 49, 342
MvaI CCWGG 2 cut(s) 49, 342
NaeI GCCGGC 1 cut(s) 465
NdeII GATC 3 cut(s) 69, 115, 285
NgoMIV GCCGGC 1 cut(s) 463
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 2 cut(s) 371, 627
PdiI GCCGGC 1 cut(s) 465
PfeI GAWTC 4 cut(s) 75, 209, 384, 575
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 1 cut(s) 496
PleI GAGTC 2 cut(s) 177, 191
PpsI GAGTC 2 cut(s) 177, 191
Psp6I CCWGG 2 cut(s) 47, 340
PspGI CCWGG 2 cut(s) 47, 340
PspN4I GGNNCC 2 cut(s) 371, 627
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 2 cut(s) 303, 627
RsaNI GTAC 2 cut(s) 302, 626
SaqAI TTAA 3 cut(s) 393, 585, 605
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 3 cut(s) 69, 115, 285
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 2 cut(s) 178, 191
ScrFI CCNGG 2 cut(s) 49, 342
SfaNI GCATC 1 cut(s) 283
SinI GGWCC 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 2 cut(s) 246, 671
SsiI CCGC 4 cut(s) 5, 79, 495, 518
SspMI CTAG 2 cut(s) 305, 597
StyD4I CCNGG 2 cut(s) 47, 340
TaaI ACNGT 3 cut(s) 123, 191, 446
TaiI ACGT 1 cut(s) 134
TaqI TCGA 4 cut(s) 270, 297, 545, 611
TasI AATT 2 cut(s) 246, 671
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 4 cut(s) 75, 209, 384, 575
Tru1I TTAA 3 cut(s) 393, 585, 605
Tru9I TTAA 3 cut(s) 393, 585, 605
TscAI CASTG 1 cut(s) 475
TspDTI ATGAA 1 cut(s) 432
TspRI CASTG 1 cut(s) 475
Van91I CCANNNNNTGG 1 cut(s) 380
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 671
XspI CTAG 2 cut(s) 305, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.