FvH4_3g44660

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000082
Physical Location & Seq
Forward (+)
37194321 .. 37194809
489 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44660.t1

Sequence Viewer

Length: 489 bp
ATGACAGTTGTGGGGATTCTTTGTAACGAGGCACTTCATTGGCTGATGTTCAATGATGATGATATTGTTTCTTTTGATTTAGCAAATGAGAAGTTTCGGACAATGGCGCTGCCTGTTGTTGGGGAGGAGTATGGAGGTGACTATTTCAGACATGTAGGAGAGTCTGGAGGTTGTCTGTGTGTGTTTGGTCAGGCGGATGTTACTGCTGCCTCTATGGATTTGTGGGTCATGAGGGAATATGATAAGGGTAACTCCTGGACTAAGCTTTTTAAAGTGAGGGTTTCCGATCAGCCTGATGAGCAGATAAGTTTTGTCCAGCCAATCTTGGGTACTGAAACTTGTACATTTCTGGAGATACATACTGAATCAGGAGGCGGGCCGAAGCTGGTCAGGAGTTATCATAAGGAAGAGAAGACTGAAGAGGTTCATATGGATAGATATAGCCGCGAAATAATTGGGTATGAAGAGAGTCTACTTTGGCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

163

Amino Acids

18.51

Weight (kDa)

4.62

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 9 - 102 1.7e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 472
AccII CGCG 1 cut(s) 447
AciI CCGC 3 cut(s) 194, 375, 445
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 2 cut(s) 331, 343
AfiI CCNNNNNNNGG 2 cut(s) 119, 326
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 2 cut(s) 265, 385
AluI AGCT 2 cut(s) 265, 385
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 2 cut(s) 109, 206
Asp700I GAANNNNTTC 1 cut(s) 423
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 149
BarI GAAGNNNNNNTAC 2 cut(s) 456, 488
BbsI GAAGAC 1 cut(s) 419
BbvI GCAGC 2 cut(s) 96, 193
BciT130I CCWGG 1 cut(s) 256
BfoI RGCGCY 1 cut(s) 110
BisI GCNGC 3 cut(s) 110, 207, 445
BlsI GCNGC 3 cut(s) 111, 208, 446
Bme1390I CCNGG 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 419
BpmI CTGGAG 2 cut(s) 186, 371
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 326
BseBI CCWGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 119, 326
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 96, 193
Bsh1236I CGCG 1 cut(s) 447
BshFI GGCC 1 cut(s) 379
BslI CCNNNNNNNGG 2 cut(s) 119, 326
BsnI GGCC 1 cut(s) 379
Bsp1407I TGTACA 1 cut(s) 341
Bsp143I GATC 1 cut(s) 286
BspACI CCGC 3 cut(s) 194, 375, 445
BspANI GGCC 1 cut(s) 379
BspFNI CGCG 1 cut(s) 447
BspHI TCATGA 1 cut(s) 228
BsrGI TGTACA 1 cut(s) 341
BssMI GATC 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 7
Bst6I CTCTTC 3 cut(s) 402, 414, 459
BstAUI TGTACA 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 202
BstFNI CGCG 1 cut(s) 447
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 254
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 96, 193
BstV2I GAAGAC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 379
BtsCI GGATG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 377
CciI TCATGA 1 cut(s) 228
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 377
Csp6I GTAC 2 cut(s) 330, 342
CviAII CATG 2 cut(s) 152, 229
CviJI RGCY 8 cut(s) 43, 265, 292, 319, 379, 385, 444, 481
CviKI_1 RGCY 8 cut(s) 43, 265, 292, 319, 379, 385, 444, 481
CviQI GTAC 2 cut(s) 330, 342
DdeI CTNAG 1 cut(s) 261
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 402, 414, 459
EarI CTCTTC 3 cut(s) 402, 414, 459
EciI GGCGGA 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 254
FaeI CATG 2 cut(s) 155, 232
FatI CATG 2 cut(s) 151, 228
FauI CCCGC 1 cut(s) 368
FauNDI CATATG 1 cut(s) 429
FblI GTMKAC 1 cut(s) 472
Fnu4HI GCNGC 3 cut(s) 110, 207, 445
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 110, 207, 445
GlaI GCGC 1 cut(s) 108
GluI GCNGC 3 cut(s) 110, 207, 445
GsuI CTGGAG 2 cut(s) 186, 371
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 1 cut(s) 379
HhaI GCGC 1 cut(s) 109
Hin1II CATG 2 cut(s) 155, 232
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 4 cut(s) 16, 161, 365, 469
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 473
Hpy188I TCNGA 3 cut(s) 99, 149, 286
Hpy188III TCNNGA 5 cut(s) 165, 229, 350, 369, 391
Hpy8I GTNNAC 1 cut(s) 473
HpyCH4III ACNGT 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 2 cut(s) 155, 232
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 1 cut(s) 286
Lsp1109I GCAGC 2 cut(s) 96, 193
MaeIII GTNAC 4 cut(s) 23, 137, 199, 248
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 4 cut(s) 419, 424, 431, 476
MluCI AATT 1 cut(s) 453
MlyI GAGTC 2 cut(s) 170, 478
MnlI CCTC 9 cut(s) 22, 118, 128, 161, 220, 225, 270, 365, 415
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 1 cut(s) 298
NdeI CATATG 1 cut(s) 429
NdeII GATC 1 cut(s) 286
NlaIII CATG 2 cut(s) 155, 232
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 1 cut(s) 155
PagI TCATGA 1 cut(s) 228
PciI ACATGT 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 2 cut(s) 16, 365
PfoI TCCNGGA 1 cut(s) 254
PkrI GCNGC 3 cut(s) 111, 208, 446
PleI GAGTC 2 cut(s) 169, 477
PpsI GAGTC 2 cut(s) 169, 477
PscI ACATGT 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspPI GGNCC 1 cut(s) 377
RsaI GTAC 2 cut(s) 331, 343
RsaNI GTAC 2 cut(s) 330, 342
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 110, 207, 445
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 2 cut(s) 170, 478
ScrFI CCNGG 1 cut(s) 256
SetI ASST 5 cut(s) 139, 172, 267, 387, 426
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 1 cut(s) 453
SsiI CCGC 3 cut(s) 194, 375, 445
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 7
TasI AATT 1 cut(s) 453
TatI WGTACW 1 cut(s) 341
TauI GCSGC 1 cut(s) 447
TfiI GAWTC 2 cut(s) 16, 365
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 2 cut(s) 109, 206
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 3 cut(s) 26, 416, 477
XceI RCATGY 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 472
XmnI GAANNNNTTC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.