Peptidase, trypsin-like serine and cysteine proteases
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 592 |
| AccI | GTMKAC | 1 cut(s) | 334 |
| AcsI | RAATTY | 2 cut(s) | 529, 713 |
| AfaI | GTAC | 3 cut(s) | 286, 553, 635 |
| AfeI | AGCGCT | 1 cut(s) | 434 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 88, 176, 567, 592 |
| AgsI | TTSAA | 2 cut(s) | 644, 722 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 330 |
| AjnI | CCWGG | 2 cut(s) | 87, 585 |
| AluBI | AGCT | 6 cut(s) | 111, 227, 424, 490, 549, 651 |
| AluI | AGCT | 6 cut(s) | 111, 227, 424, 490, 549, 651 |
| Alw21I | GWGCWC | 2 cut(s) | 113, 229 |
| Alw26I | GTCTC | 1 cut(s) | 188 |
| Aor51HI | AGCGCT | 1 cut(s) | 434 |
| ApeKI | GCWGC | 3 cut(s) | 166, 648, 663 |
| ApoI | RAATTY | 2 cut(s) | 529, 713 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 212 |
| AspLEI | GCGC | 1 cut(s) | 435 |
| AsuC2I | CCSGG | 1 cut(s) | 319 |
| AsuHPI | GGTGA | 1 cut(s) | 334 |
| BanII | GRGCYC | 2 cut(s) | 113, 229 |
| BauI | CACGAG | 1 cut(s) | 478 |
| Bbv12I | GWGCWC | 2 cut(s) | 113, 229 |
| BbvI | GCAGC | 3 cut(s) | 178, 660, 675 |
| BceAI | ACGGC | 1 cut(s) | 66 |
| BciT130I | CCWGG | 2 cut(s) | 89, 587 |
| BclI | TGATCA | 2 cut(s) | 256, 604 |
| BcnI | CCSGG | 1 cut(s) | 319 |
| BcoDI | GTCTC | 1 cut(s) | 188 |
| BfmI | CTRYAG | 1 cut(s) | 153 |
| BfoI | RGCGCY | 1 cut(s) | 436 |
| BisI | GCNGC | 3 cut(s) | 167, 649, 664 |
| BlsI | GCNGC | 3 cut(s) | 168, 650, 665 |
| Bme1390I | CCNGG | 3 cut(s) | 89, 319, 587 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 330 |
| BmiI | GGNNCC | 1 cut(s) | 52 |
| BmrFI | CCNGG | 3 cut(s) | 89, 319, 587 |
| BmsI | GCATC | 1 cut(s) | 392 |
| BpmI | CTGGAG | 1 cut(s) | 205 |
| Bpu10I | CCTNAGC | 1 cut(s) | 228 |
| BpuMI | CCSGG | 1 cut(s) | 319 |
| BsaAI | YACGTR | 1 cut(s) | 633 |
| BsaJI | CCNNGG | 2 cut(s) | 318, 505 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 67, 97 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 88, 176, 567, 592 |
| Bse1I | ACTGG | 1 cut(s) | 314 |
| BseBI | CCWGG | 2 cut(s) | 89, 587 |
| BseDI | CCNNGG | 2 cut(s) | 318, 505 |
| BseGI | GGATG | 2 cut(s) | 407, 478 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 88, 176, 567, 592 |
| BseMII | CTCAG | 3 cut(s) | 242, 387, 416 |
| BseNI | ACTGG | 1 cut(s) | 314 |
| BseRI | GAGGAG | 1 cut(s) | 208 |
| BseXI | GCAGC | 3 cut(s) | 178, 660, 675 |
| BseYI | CCCAGC | 2 cut(s) | 54, 386 |
| BsgI | GTGCAG | 1 cut(s) | 436 |
| Bsh1285I | CGRYCG | 1 cut(s) | 318 |
| BsiEI | CGRYCG | 1 cut(s) | 318 |
| BsiHKAI | GWGCWC | 2 cut(s) | 113, 229 |
| BsiSI | CCGG | 1 cut(s) | 318 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 88, 176, 567, 592 |
| BsmAI | GTCTC | 1 cut(s) | 188 |
| BsmI | GAATGC | 1 cut(s) | 388 |
| Bsp1286I | GDGCHC | 2 cut(s) | 113, 229 |
| Bsp1407I | TGTACA | 1 cut(s) | 551 |
| Bsp143I | GATC | 4 cut(s) | 256, 604, 675, 725 |
| Bsp19I | CCATGG | 1 cut(s) | 505 |
| BspCNI | CTCAG | 3 cut(s) | 241, 388, 417 |
| BspHI | TCATGA | 3 cut(s) | 378, 709, 728 |
| BspLI | GGNNCC | 1 cut(s) | 52 |
| BsrGI | TGTACA | 1 cut(s) | 551 |
| BsrI | ACTGG | 1 cut(s) | 314 |
| BssECI | CCNNGG | 2 cut(s) | 318, 505 |
| BssMI | GATC | 4 cut(s) | 256, 604, 675, 725 |
| BssSI | CACGAG | 1 cut(s) | 478 |
| BssT1I | CCWWGG | 1 cut(s) | 505 |
| Bst2BI | CACGAG | 1 cut(s) | 478 |
| Bst2UI | CCWGG | 2 cut(s) | 89, 587 |
| Bst4CI | ACNGT | 3 cut(s) | 103, 244, 556 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstAUI | TGTACA | 1 cut(s) | 551 |
| BstBAI | YACGTR | 1 cut(s) | 633 |
| BstC8I | GCNNGC | 1 cut(s) | 653 |
| BstDEI | CTNAG | 4 cut(s) | 228, 396, 425, 486 |
| BstDSI | CCRYGG | 1 cut(s) | 505 |
| BstF5I | GGATG | 2 cut(s) | 407, 478 |
| BstH2I | RGCGCY | 1 cut(s) | 436 |
| BstHHI | GCGC | 1 cut(s) | 435 |
| BstKTI | GATC | 4 cut(s) | 259, 607, 678, 728 |
| BstMAI | GTCTC | 1 cut(s) | 188 |
| BstMBI | GATC | 4 cut(s) | 256, 604, 675, 725 |
| BstMCI | CGRYCG | 1 cut(s) | 318 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 25, 430 |
| BstNI | CCWGG | 2 cut(s) | 89, 587 |
| BstSCI | CCNGG | 3 cut(s) | 87, 317, 585 |
| BstSFI | CTRYAG | 1 cut(s) | 153 |
| BstV1I | GCAGC | 3 cut(s) | 178, 660, 675 |
| BtgI | CCRYGG | 1 cut(s) | 505 |
| BtsCI | GGATG | 2 cut(s) | 407, 478 |
| BtsI | GCAGTG | 1 cut(s) | 684 |
| BtsIMutI | CAGTG | 2 cut(s) | 307, 684 |
| Cac8I | GCNNGC | 1 cut(s) | 653 |
| CciI | TCATGA | 3 cut(s) | 378, 709, 728 |
| CfoI | GCGC | 1 cut(s) | 435 |
| CseI | GACGC | 1 cut(s) | 320 |
| Csp6I | GTAC | 3 cut(s) | 285, 552, 634 |
| CviAII | CATG | 9 cut(s) | 72, 114, 121, 254, 379, 506, 673, 710, 729 |
| CviQI | GTAC | 3 cut(s) | 285, 552, 634 |
| DdeI | CTNAG | 4 cut(s) | 228, 396, 425, 486 |
| DpnI | GATC | 4 cut(s) | 258, 606, 677, 727 |
| DpnII | GATC | 4 cut(s) | 256, 604, 675, 725 |
| DraI | TTTAAA | 1 cut(s) | 294 |
| DriI | GACNNNNNGTC | 1 cut(s) | 330 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 330 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| Ecl136II | GAGCTC | 2 cut(s) | 111, 227 |
| Eco130I | CCWWGG | 1 cut(s) | 505 |
| Eco24I | GRGCYC | 2 cut(s) | 113, 229 |
| Eco47III | AGCGCT | 1 cut(s) | 434 |
| Eco53kI | GAGCTC | 2 cut(s) | 111, 227 |
| EcoICRI | GAGCTC | 2 cut(s) | 111, 227 |
| EcoRI | GAATTC | 1 cut(s) | 713 |
| EcoRII | CCWGG | 2 cut(s) | 87, 585 |
| EcoT14I | CCWWGG | 1 cut(s) | 505 |
| EcoT38I | GRGCYC | 2 cut(s) | 113, 229 |
| ErhI | CCWWGG | 1 cut(s) | 505 |
| FaeI | CATG | 9 cut(s) | 75, 117, 124, 257, 382, 509, 676, 713, 732 |
| FatI | CATG | 9 cut(s) | 71, 113, 120, 253, 378, 505, 672, 709, 728 |
| FauNDI | CATATG | 1 cut(s) | 174 |
| FbaI | TGATCA | 2 cut(s) | 256, 604 |
| FblI | GTMKAC | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 3 cut(s) | 167, 649, 664 |
| FokI | GGATG | 2 cut(s) | 414, 485 |
| FriOI | GRGCYC | 2 cut(s) | 113, 229 |
| Fsp4HI | GCNGC | 3 cut(s) | 167, 649, 664 |
| GlaI | GCGC | 1 cut(s) | 434 |
| GluI | GCNGC | 3 cut(s) | 167, 649, 664 |
| GsaI | CCCAGC | 2 cut(s) | 58, 390 |
| GsuI | CTGGAG | 1 cut(s) | 205 |
| HaeII | RGCGCY | 1 cut(s) | 436 |
| HapII | CCGG | 1 cut(s) | 318 |
| HgaI | GACGC | 1 cut(s) | 320 |
| HhaI | GCGC | 1 cut(s) | 435 |
| Hin1II | CATG | 9 cut(s) | 75, 117, 124, 257, 382, 509, 676, 713, 732 |
| Hin6I | GCGC | 1 cut(s) | 433 |
| HinP1I | GCGC | 1 cut(s) | 433 |
| HinfI | GANTC | 3 cut(s) | 65, 350, 476 |
| HpaII | CCGG | 1 cut(s) | 318 |
| HphI | GGTGA | 1 cut(s) | 334 |
| Hpy166II | GTNNAC | 2 cut(s) | 335, 483 |
| Hpy188I | TCNGA | 2 cut(s) | 355, 397 |
| Hpy188III | TCNNGA | 7 cut(s) | 48, 106, 222, 379, 515, 710, 729 |
| Hpy8I | GTNNAC | 2 cut(s) | 335, 483 |
| Hpy99I | CGWCG | 1 cut(s) | 103 |
| HpyCH4III | ACNGT | 3 cut(s) | 103, 244, 556 |
| HpyCH4IV | ACGT | 1 cut(s) | 632 |
| HpyCH4V | TGCA | 2 cut(s) | 417, 684 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 25, 430 |
| HpyF3I | CTNAG | 4 cut(s) | 228, 396, 425, 486 |
| HpySE526I | ACGT | 1 cut(s) | 632 |
| Hsp92II | CATG | 9 cut(s) | 75, 117, 124, 257, 382, 509, 676, 713, 732 |
| HspAI | GCGC | 1 cut(s) | 433 |
| Ksp22I | TGATCA | 2 cut(s) | 256, 604 |
| Kzo9I | GATC | 4 cut(s) | 256, 604, 675, 725 |
| Lsp1109I | GCAGC | 3 cut(s) | 178, 660, 675 |
| LweI | GCATC | 1 cut(s) | 392 |
| MaeII | ACGT | 1 cut(s) | 632 |
| MaeIII | GTNAC | 1 cut(s) | 322 |
| MalI | GATC | 4 cut(s) | 258, 606, 677, 727 |
| MboI | GATC | 4 cut(s) | 256, 604, 675, 725 |
| MboII | GAAGA | 3 cut(s) | 60, 212, 220 |
| MfeI | CAATTG | 1 cut(s) | 565 |
| MhlI | GDGCHC | 2 cut(s) | 113, 229 |
| MluCI | AATT | 6 cut(s) | 442, 529, 565, 639, 699, 713 |
| MlyI | GAGTC | 2 cut(s) | 344, 470 |
| MmeI | TCCRAC | 1 cut(s) | 378 |
| MnlI | CCTC | 4 cut(s) | 229, 292, 391, 571 |
| MroXI | GAANNNNTTC | 1 cut(s) | 212 |
| MseI | TTAA | 4 cut(s) | 23, 293, 495, 669 |
| MspA1I | CMGCKG | 1 cut(s) | 651 |
| MspI | CCGG | 1 cut(s) | 318 |
| MspR9I | CCNGG | 3 cut(s) | 89, 319, 587 |
| MunI | CAATTG | 1 cut(s) | 565 |
| Mva1269I | GAATGC | 1 cut(s) | 388 |
| MvaI | CCWGG | 2 cut(s) | 89, 587 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 25, 430 |
| NciI | CCSGG | 1 cut(s) | 319 |
| NcoI | CCATGG | 1 cut(s) | 505 |
| NdeI | CATATG | 1 cut(s) | 174 |
| NdeII | GATC | 4 cut(s) | 256, 604, 675, 725 |
| NlaIII | CATG | 9 cut(s) | 75, 117, 124, 257, 382, 509, 676, 713, 732 |
| NlaIV | GGNNCC | 1 cut(s) | 52 |
| NmuCI | GTSAC | 1 cut(s) | 322 |
| PagI | TCATGA | 3 cut(s) | 378, 709, 728 |
| PctI | GAATGC | 1 cut(s) | 388 |
| PdmI | GAANNNNTTC | 1 cut(s) | 212 |
| PfeI | GAWTC | 1 cut(s) | 65 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 592 |
| PkrI | GCNGC | 3 cut(s) | 168, 650, 665 |
| PleI | GAGTC | 2 cut(s) | 344, 470 |
| PpsI | GAGTC | 2 cut(s) | 344, 470 |
| Ppu21I | YACGTR | 1 cut(s) | 633 |
| Psp124BI | GAGCTC | 2 cut(s) | 113, 229 |
| Psp6I | CCWGG | 2 cut(s) | 87, 585 |
| PspFI | CCCAGC | 2 cut(s) | 54, 386 |
| PspGI | CCWGG | 2 cut(s) | 87, 585 |
| PspN4I | GGNNCC | 1 cut(s) | 52 |
| PvuII | CAGCTG | 1 cut(s) | 651 |
| RsaI | GTAC | 3 cut(s) | 286, 553, 635 |
| RsaNI | GTAC | 3 cut(s) | 285, 552, 634 |
| SacI | GAGCTC | 2 cut(s) | 113, 229 |
| SaqAI | TTAA | 4 cut(s) | 23, 293, 495, 669 |
| SatI | GCNGC | 3 cut(s) | 167, 649, 664 |
| Sau3AI | GATC | 4 cut(s) | 256, 604, 675, 725 |
| SchI | GAGTC | 2 cut(s) | 344, 470 |
| ScrFI | CCNGG | 3 cut(s) | 89, 319, 587 |
| SduI | GDGCHC | 2 cut(s) | 113, 229 |
| SfaNI | GCATC | 1 cut(s) | 392 |
| SfcI | CTRYAG | 1 cut(s) | 153 |
| Sse9I | AATT | 6 cut(s) | 442, 529, 565, 639, 699, 713 |
| SstI | GAGCTC | 2 cut(s) | 113, 229 |
| StyD4I | CCNGG | 3 cut(s) | 87, 317, 585 |
| StyI | CCWWGG | 1 cut(s) | 505 |
| TaaI | ACNGT | 3 cut(s) | 103, 244, 556 |
| TaiI | ACGT | 1 cut(s) | 635 |
| TasI | AATT | 6 cut(s) | 442, 529, 565, 639, 699, 713 |
| TatI | WGTACW | 1 cut(s) | 551 |
| TfiI | GAWTC | 1 cut(s) | 65 |
| Tru1I | TTAA | 4 cut(s) | 23, 293, 495, 669 |
| Tru9I | TTAA | 4 cut(s) | 23, 293, 495, 669 |
| TscAI | CASTG | 2 cut(s) | 314, 691 |
| TseFI | GTSAC | 1 cut(s) | 322 |
| TseI | GCWGC | 3 cut(s) | 166, 648, 663 |
| Tsp45I | GTSAC | 1 cut(s) | 322 |
| TspDTI | ATGAA | 6 cut(s) | 60, 221, 367, 395, 698, 726 |
| TspGWI | ACGGA | 1 cut(s) | 540 |
| TspRI | CASTG | 2 cut(s) | 314, 691 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 592 |
| XapI | RAATTY | 2 cut(s) | 529, 713 |
| XmiI | GTMKAC | 1 cut(s) | 334 |
| XmnI | GAANNNNTTC | 1 cut(s) | 212 |