Rorug02G0147600

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
12955682 .. 12956927
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0147600.1

Sequence Viewer

Length: 492 bp
ATGTTGCTTCTTACACCAGCATCCACTCCTCTATTGTCACACCCAGCAAATGGTCTCACATTTAGAACAAACACAACCAGATTTCAAACCCAACTCAAGGTCTTATCCATGGCCAAGCAAACCAGCGAAGAAACCAGCAGCACCACCATAGAGAAAATAGCCATAGCTGGCGGCTTAGTCTCCAACCCGGTGATTGGTTGGTCCATCTACACTCTCAAGACCACCGGGTGTGGCCTGCCTCCCGGACCCGGTGGATCCATCGGTGCACTTGAAGGTGTCAGCTACCTAGCTGTGCTGGGAATAGTGGGTTGGTCTTTGTACACCAAGACCAAAACAGGCTCGGGTCTGCCCAATGGACCATTTGGGTTGCTTGGTGCTGTTGAGGGTCTGTCTTACTTGTCTTTGCTTGCCATTTTGGTCGTGTTTGGGATCCAGTTTGTTCAGCAGGGCTCCATTCCAGGACCCCTCCCAACTGATCAGTGCTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

163

Amino Acids

16.81

Weight (kDa)

8.64

Isoelectric Point (pI)

22.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 50
AciI CCGC 1 cut(s) 171
AclWI GGATC 4 cut(s) 249, 262, 424, 437
AcoI YGGCCR 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 228
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 4 cut(s) 50, 97, 194, 248
AgsI TTSAA 2 cut(s) 86, 272
AjnI CCWGG 1 cut(s) 457
AjuI GAANNNNNNNTTGG 2 cut(s) 292, 324
AluBI AGCT 3 cut(s) 167, 282, 290
AluI AGCT 3 cut(s) 167, 282, 290
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 2 cut(s) 59, 184
Alw44I GTGCAC 1 cut(s) 264
AlwI GGATC 4 cut(s) 249, 262, 424, 437
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 2 cut(s) 111, 232
ApaLI GTGCAC 1 cut(s) 264
ApeKI GCWGC 1 cut(s) 138
AspS9I GGNCC 4 cut(s) 201, 245, 356, 461
AsuC2I CCSGG 4 cut(s) 188, 226, 243, 249
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 4 cut(s) 201, 245, 356, 461
BaeGI GKGCMC 1 cut(s) 268
BalI TGGCCA 1 cut(s) 113
BamHI GGATCC 2 cut(s) 254, 429
BanII GRGCYC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 1 cut(s) 150
BccI CCATC 2 cut(s) 212, 266
BciT130I CCWGG 1 cut(s) 459
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 4 cut(s) 188, 226, 243, 249
BcoDI GTCTC 2 cut(s) 59, 184
BfaI CTAG 1 cut(s) 287
BisI GCNGC 2 cut(s) 139, 172
BlsI GCNGC 2 cut(s) 140, 173
Bme1390I CCNGG 5 cut(s) 188, 226, 243, 249, 459
Bme18I GGWCC 4 cut(s) 201, 245, 356, 461
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 4 cut(s) 201, 245, 356, 461
BmiI GGNNCC 5 cut(s) 247, 256, 431, 451, 463
BmrFI CCNGG 5 cut(s) 188, 226, 243, 249, 459
BmsI GCATC 1 cut(s) 29
BpuEI CTTGAG 2 cut(s) 80, 200
BpuMI CCSGG 4 cut(s) 188, 226, 243, 249
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 97, 194, 248
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 20
BseLI CCNNNNNNNGG 4 cut(s) 50, 97, 194, 248
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 1 cut(s) 150
BseYI CCCAGC 2 cut(s) 43, 295
BshFI GGCC 2 cut(s) 113, 234
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 4 cut(s) 188, 225, 243, 249
BslI CCNNNNNNNGG 4 cut(s) 50, 97, 194, 248
BsmAI GTCTC 2 cut(s) 59, 184
BsnI GGCC 2 cut(s) 113, 234
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 2 cut(s) 268, 452
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 3 cut(s) 254, 429, 475
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 1 cut(s) 171
BspANI GGCC 2 cut(s) 113, 234
BspLI GGNNCC 5 cut(s) 247, 256, 431, 451, 463
BspPI GGATC 4 cut(s) 249, 262, 424, 437
BspTNI GGTCTC 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 318
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 3 cut(s) 254, 429, 475
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 459
BstAUI TGTACA 1 cut(s) 318
BstC8I GCNNGC 3 cut(s) 169, 236, 408
BstDEI CTNAG 1 cut(s) 175
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 20
BstKTI GATC 3 cut(s) 257, 432, 478
BstMAI GTCTC 2 cut(s) 59, 184
BstMBI GATC 3 cut(s) 254, 429, 475
BstNI CCWGG 1 cut(s) 459
BstSCI CCNGG 5 cut(s) 186, 224, 241, 247, 457
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 150
BstX2I RGATCY 2 cut(s) 254, 429
BstYI RGATCY 2 cut(s) 254, 429
BsuRI GGCC 2 cut(s) 113, 234
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 485
Cac8I GCNNGC 3 cut(s) 169, 236, 408
Cfr13I GGNCC 4 cut(s) 201, 245, 356, 461
Csp6I GTAC 1 cut(s) 319
CviAII CATG 1 cut(s) 109
CviJI RGCY 9 cut(s) 113, 161, 167, 174, 234, 282, 290, 339, 450
CviKI_1 RGCY 9 cut(s) 113, 161, 167, 174, 234, 282, 290, 339, 450
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 1 cut(s) 175
DpnI GATC 3 cut(s) 256, 431, 477
DpnII GATC 3 cut(s) 254, 429, 475
DraIII CACNNNGTG 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 4 cut(s) 201, 245, 356, 461
Eco88I CYCGRG 1 cut(s) 340
EcoO109I RGGNCCY 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 112
FaiI YATR 3 cut(s) 110, 149, 164
FatI CATG 1 cut(s) 108
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 139, 172
FokI GGATG 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 452
Fsp4HI GCNGC 2 cut(s) 139, 172
FspBI CTAG 1 cut(s) 287
GluI GCNGC 2 cut(s) 139, 172
GsaI CCCAGC 2 cut(s) 47, 299
HaeIII GGCC 2 cut(s) 113, 234
HapII CCGG 4 cut(s) 188, 225, 243, 249
Hin1II CATG 1 cut(s) 112
HpaII CCGG 4 cut(s) 188, 225, 243, 249
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 266, 321
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 2 cut(s) 266, 321
HpyAV CCTTC 1 cut(s) 266
HpyCH4V TGCA 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 175
Hsp92II CATG 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 3 cut(s) 254, 429, 475
LmnI GCTCC 1 cut(s) 455
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 29
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 36
MalI GATC 3 cut(s) 256, 431, 477
MboI GATC 3 cut(s) 254, 429, 475
MboII GAAGA 1 cut(s) 140
MflI RGATCY 2 cut(s) 254, 429
MhlI GDGCHC 2 cut(s) 268, 452
MlsI TGGCCA 1 cut(s) 113
MluNI TGGCCA 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 4 cut(s) 39, 249, 376, 476
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 4 cut(s) 188, 225, 243, 249
MspR9I CCNGG 5 cut(s) 188, 226, 243, 249, 459
MvaI CCWGG 1 cut(s) 459
NciI CCSGG 4 cut(s) 188, 226, 243, 249
NcoI CCATGG 1 cut(s) 108
NdeII GATC 3 cut(s) 254, 429, 475
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 5 cut(s) 247, 256, 431, 451, 463
NmuCI GTSAC 1 cut(s) 36
PflMI CCANNNNNTGG 1 cut(s) 50
PfoI TCCNGGA 2 cut(s) 241, 457
PkrI GCNGC 2 cut(s) 140, 173
PpuMI RGGWCCY 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 457
PspFI CCCAGC 2 cut(s) 43, 295
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 5 cut(s) 247, 256, 431, 451, 463
PspPI GGNCC 4 cut(s) 201, 245, 356, 461
PspPPI RGGWCCY 1 cut(s) 461
PsuI RGATCY 2 cut(s) 254, 429
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SatI GCNGC 2 cut(s) 139, 172
Sau3AI GATC 3 cut(s) 254, 429, 475
Sau96I GGNCC 4 cut(s) 201, 245, 356, 461
ScrFI CCNGG 5 cut(s) 188, 226, 243, 249, 459
SduI GDGCHC 2 cut(s) 268, 452
SetI ASST 6 cut(s) 102, 169, 277, 284, 288, 292
SfaNI GCATC 1 cut(s) 29
SinI GGWCC 4 cut(s) 201, 245, 356, 461
SmlI CTYRAG 2 cut(s) 95, 215
SmoI CTYRAG 2 cut(s) 95, 215
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 5 cut(s) 186, 224, 241, 247, 457
StyI CCWWGG 1 cut(s) 108
TatI WGTACW 1 cut(s) 318
TauI GCSGC 1 cut(s) 174
TscAI CASTG 1 cut(s) 485
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 1 cut(s) 138
Tsp45I GTSAC 1 cut(s) 36
TspRI CASTG 1 cut(s) 485
Van91I CCANNNNNTGG 1 cut(s) 50
VneI GTGCAC 1 cut(s) 264
VpaK11BI GGWCC 4 cut(s) 201, 245, 356, 461
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.