RLG00000036923

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
86582614 .. 86585575
2962 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036923

Sequence Viewer

Length: 771 bp
ATGCCTATGGACTGTACTTGTCATCAGAGCATGACACCTAGCCTAGGAGGGGTTGAGGTTCTTGATTTCTTTGGACTATGCTTTTCTAGAAGTGAGGTCATGATATGCTTTTGCCTTGCTATCCAAGATGCCACTGACGAGTACAAGATTCTCATAGCCACCTCTAAACTTGGGAAGAAGGAAGAGGGAGCCAAGATCCGCATCTTCTCGTCGAAATCCAGCTCTTGGAAAAGGATTCAAGATTCCCAATACTCCGTCTTGTCAACGACATTTGACGGGACTCTTTTAAATGAGGCACTTCATTGGCTGCGAAGATCTGATGTCGTTATATTTGCTTTTGATTTAGCAGATGAGGAGTTCCGGACAATGCCGCTGCCGGTTGTTGAGGATCGCTATGCTGGTGGCTATTTCAGACATCTAGGGGACTTTGGAGGTTGCCTGTGTGTGTTTGGTCAGGCTGATACTAATGCTGGCTCTATGGATTTGTGGGTCATGAGGGAATATGATGCGGGTAACTCCTGGACTAAGCTGTTTAACTTAAAGCTTTCCGATCAGCCTGAGCAGATAAATTTTGTCAAGCCAATATGGGTTATGGAAACTAGTACATTTCTGGAGGTACGTACTAATTCTGAGAGCGATACGAAGTGGGTAAGGAGTTATCATAAGGAAGAGAAGATCGAAGAGATTCATATGGAAGGGAACATCAAAGAGATTCGTATGATTAGAGAGTCAGTGATTGGATATGAAGAGAGTCTACTTTGGCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

257

Amino Acids

29.45

Weight (kDa)

4.92

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 44 - 190 1.8e-11 F-box associated beta propeller domain
FBA_1 PF07734 45 - 252 5.3e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 225
AccI GTMKAC 1 cut(s) 754
AccIII TCCGGA 1 cut(s) 360
AciI CCGC 3 cut(s) 199, 371, 509
AclWI GGATC 2 cut(s) 190, 396
AcsI RAATTY 1 cut(s) 568
AfaI GTAC 5 cut(s) 16, 143, 604, 618, 622
AfiI CCNNNNNNNGG 3 cut(s) 44, 49, 225
AgsI TTSAA 1 cut(s) 239
AhlI ACTAGT 1 cut(s) 599
AjnI CCWGG 1 cut(s) 518
AluBI AGCT 3 cut(s) 222, 529, 544
AluI AGCT 3 cut(s) 222, 529, 544
AlwI GGATC 2 cut(s) 190, 396
Aor13HI TCCGGA 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 307, 373
ApoI RAATTY 1 cut(s) 568
Asp700I GAANNNNTTC 1 cut(s) 684
AspA2I CCTAGG 1 cut(s) 43
AvrII CCTAGG 1 cut(s) 43
BarI GAAGNNNNNNTAC 2 cut(s) 738, 770
BbvI GCAGC 2 cut(s) 294, 360
BciT130I CCWGG 1 cut(s) 520
BcuI ACTAGT 1 cut(s) 599
BfaI CTAG 5 cut(s) 39, 44, 87, 419, 600
BglII AGATCT 1 cut(s) 314
BisI GCNGC 3 cut(s) 308, 371, 374
BlnI CCTAGG 1 cut(s) 43
BlsI GCNGC 3 cut(s) 309, 372, 375
Bme1390I CCNGG 1 cut(s) 520
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 520
BmsI GCATC 3 cut(s) 118, 210, 496
BpmI CTGGAG 1 cut(s) 632
Bpu10I CCTNAGC 1 cut(s) 558
BsaAI YACGTR 1 cut(s) 620
BsaBI GATNNNNATC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 360
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 49, 225
Bse118I RCCGGY 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 200
BseAI TCCGGA 1 cut(s) 360
BseBI CCWGG 1 cut(s) 520
BseDI CCNNGG 1 cut(s) 43
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 3 cut(s) 44, 49, 225
BseMII CTCAG 2 cut(s) 549, 621
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 2 cut(s) 294, 360
BsiSI CCGG 2 cut(s) 361, 377
BslFI GGGAC 2 cut(s) 292, 437
BslI CCNNNNNNNGG 3 cut(s) 44, 49, 225
BsmFI GGGAC 2 cut(s) 292, 437
Bsp13I TCCGGA 1 cut(s) 360
Bsp143I GATC 5 cut(s) 195, 314, 388, 550, 675
BspACI CCGC 3 cut(s) 199, 371, 509
BspCNI CTCAG 2 cut(s) 550, 622
BspEI TCCGGA 1 cut(s) 360
BspHI TCATGA 2 cut(s) 99, 492
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 2 cut(s) 190, 396
BsrFI RCCGGY 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 5 cut(s) 195, 314, 388, 550, 675
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 520
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 4 cut(s) 177, 663, 675, 741
BstBAI YACGTR 1 cut(s) 620
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 3 cut(s) 525, 558, 630
BstENI CCTNNNNNAGG 1 cut(s) 42
BstKTI GATC 5 cut(s) 198, 317, 391, 553, 678
BstMBI GATC 5 cut(s) 195, 314, 388, 550, 675
BstNI CCWGG 1 cut(s) 520
BstSCI CCNGG 1 cut(s) 518
BstSNI TACGTA 1 cut(s) 620
BstV1I GCAGC 2 cut(s) 294, 360
BstX2I RGATCY 2 cut(s) 195, 314
BstYI RGATCY 2 cut(s) 195, 314
BtsIMutI CAGTG 2 cut(s) 132, 738
Cac8I GCNNGC 1 cut(s) 472
CciI TCATGA 2 cut(s) 99, 492
Cfr10I RCCGGY 1 cut(s) 376
Csp6I GTAC 5 cut(s) 15, 142, 603, 617, 621
CviAII CATG 3 cut(s) 31, 100, 493
CviQI GTAC 5 cut(s) 15, 142, 603, 617, 621
DdeI CTNAG 3 cut(s) 525, 558, 630
DpnI GATC 5 cut(s) 197, 316, 390, 552, 677
DpnII GATC 5 cut(s) 195, 314, 388, 550, 675
DraI TTTAAA 1 cut(s) 288
Eam1104I CTCTTC 4 cut(s) 177, 663, 675, 741
EarI CTCTTC 4 cut(s) 177, 663, 675, 741
Eco105I TACGTA 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 3 cut(s) 34, 103, 496
FaqI GGGAC 2 cut(s) 292, 437
FatI CATG 3 cut(s) 30, 99, 492
FauI CCCGC 1 cut(s) 502
FauNDI CATATG 1 cut(s) 690
FblI GTMKAC 1 cut(s) 754
Fnu4HI GCNGC 3 cut(s) 308, 371, 374
Fsp4HI GCNGC 3 cut(s) 308, 371, 374
FspBI CTAG 5 cut(s) 39, 44, 87, 419, 600
GluI GCNGC 3 cut(s) 308, 371, 374
GsuI CTGGAG 1 cut(s) 632
HapII CCGG 2 cut(s) 361, 377
Hin1II CATG 3 cut(s) 34, 103, 496
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 8 cut(s) 148, 235, 242, 280, 685, 712, 728, 751
HpaII CCGG 2 cut(s) 361, 377
Hpy166II GTNNAC 2 cut(s) 264, 755
Hpy188I TCNGA 5 cut(s) 27, 319, 413, 550, 631
Hpy188III TCNNGA 7 cut(s) 62, 87, 100, 239, 361, 493, 611
Hpy8I GTNNAC 2 cut(s) 264, 755
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 172, 689
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 619
HpyF3I CTNAG 3 cut(s) 525, 558, 630
HpySE526I ACGT 1 cut(s) 619
Hsp92II CATG 3 cut(s) 34, 103, 496
Kpn2I TCCGGA 1 cut(s) 360
Kzo9I GATC 5 cut(s) 195, 314, 388, 550, 675
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 2 cut(s) 294, 360
LweI GCATC 3 cut(s) 118, 210, 496
MaeI CTAG 5 cut(s) 39, 44, 87, 419, 600
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 1 cut(s) 512
MalI GATC 5 cut(s) 197, 316, 390, 552, 677
MboI GATC 5 cut(s) 195, 314, 388, 550, 675
MboII GAAGA 8 cut(s) 187, 194, 196, 324, 680, 685, 692, 758
MflI RGATCY 2 cut(s) 195, 314
MluCI AATT 2 cut(s) 568, 625
MlyI GAGTC 3 cut(s) 274, 737, 760
MroI TCCGGA 1 cut(s) 360
MroXI GAANNNNTTC 1 cut(s) 684
MseI TTAA 3 cut(s) 287, 534, 539
MspA1I CMGCKG 1 cut(s) 373
MspI CCGG 2 cut(s) 361, 377
MspR9I CCNGG 1 cut(s) 520
MvaI CCWGG 1 cut(s) 520
NdeI CATATG 1 cut(s) 690
NdeII GATC 5 cut(s) 195, 314, 388, 550, 675
NlaIII CATG 3 cut(s) 34, 103, 496
NlaIV GGNNCC 1 cut(s) 190
PagI TCATGA 2 cut(s) 99, 492
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 5 cut(s) 148, 235, 242, 685, 712
PflMI CCANNNNNTGG 1 cut(s) 225
PfoI TCCNGGA 1 cut(s) 518
PkrI GCNGC 3 cut(s) 309, 372, 375
PleI GAGTC 3 cut(s) 274, 736, 759
PpsI GAGTC 3 cut(s) 274, 736, 759
Ppu21I YACGTR 1 cut(s) 620
Psp6I CCWGG 1 cut(s) 518
PspGI CCWGG 1 cut(s) 518
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 2 cut(s) 195, 314
RsaI GTAC 5 cut(s) 16, 143, 604, 618, 622
RsaNI GTAC 5 cut(s) 15, 142, 603, 617, 621
SaqAI TTAA 3 cut(s) 287, 534, 539
SatI GCNGC 3 cut(s) 308, 371, 374
Sau3AI GATC 5 cut(s) 195, 314, 388, 550, 675
SchI GAGTC 3 cut(s) 274, 737, 760
ScrFI CCNGG 1 cut(s) 520
SfaNI GCATC 3 cut(s) 118, 210, 496
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
SnaBI TACGTA 1 cut(s) 620
SpeI ACTAGT 1 cut(s) 599
Sse9I AATT 2 cut(s) 568, 625
SsiI CCGC 3 cut(s) 199, 371, 509
SspMI CTAG 5 cut(s) 39, 44, 87, 419, 600
StyD4I CCNGG 1 cut(s) 518
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 622
TaqI TCGA 2 cut(s) 212, 678
TasI AATT 2 cut(s) 568, 625
TatI WGTACW 3 cut(s) 14, 141, 602
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 5 cut(s) 148, 235, 242, 685, 712
Tru1I TTAA 3 cut(s) 287, 534, 539
Tru9I TTAA 3 cut(s) 287, 534, 539
TscAI CASTG 2 cut(s) 139, 738
TseI GCWGC 2 cut(s) 307, 373
TspDTI ATGAA 3 cut(s) 290, 677, 759
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 2 cut(s) 139, 738
Van91I CCANNNNNTGG 1 cut(s) 225
XagI CCTNNNNNAGG 1 cut(s) 42
XapI RAATTY 1 cut(s) 568
XbaI TCTAGA 1 cut(s) 86
XmaJI CCTAGG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 754
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 5 cut(s) 39, 44, 87, 419, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.