Rmu_sc0000375.1_g000022

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000375.1
Physical Location & Seq
Reverse (-)
90480 .. 91753
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000375.1_g000022.1.cds

Sequence Viewer

Length: 711 bp
atgtatatctggaacccatcaactcaattcttcaaaaacttacctgacccagctgatcttccctcaaaacctcaatgtctagtctactatggttttggctatttgtcggccactgacgactacaaaattattgccaaccttgaagtcatccttggtggtgaggtggagggcaaggagatgcacatcttctcaacaaaagccaacatttggaaaaggactgaatcccctctcgattccgacattcaatacgaggggacactttcaaacgaggcactgcattggttggacatccttggaatcttagcttttgatctagcaaaggaggagttccgaagattgccgctgcctattctagatggtgactttaggggtctcagggcttttggagactgtctatgtgcatttgattttgaaaatcttgatttgtgggtaatgaaagaatacggcgtggctgactcctggacgaagctctttaaattaaaggtttccaatcagcctgagaagatatttggttgctggccaatgtcggtaatggaaactagtacatttctgcagaaagggactttatgccgtggtggggagcttgtgtttgatttgataaggagtgttcatacggaagagaagcctgaaatgcatgtgttgagcagcgatgcagatttcagggaaatgatcgaatatcaagagactctactttggcttgctgccccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

236

Amino Acids

27.1

Weight (kDa)

4.65

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 207
AccI GTMKAC 1 cut(s) 84
AciI CCGC 1 cut(s) 341
AcoI YGGCCR 2 cut(s) 108, 518
AfaI GTAC 1 cut(s) 544
AfiI CCNNNNNNNGG 2 cut(s) 207, 577
AgsI TTSAA 5 cut(s) 34, 143, 245, 264, 413
AhlI ACTAGT 1 cut(s) 539
AjnI CCWGG 1 cut(s) 458
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 4 cut(s) 53, 305, 469, 583
AluI AGCT 4 cut(s) 53, 305, 469, 583
Alw26I GTCTC 3 cut(s) 377, 381, 677
AoxI GGCC 2 cut(s) 108, 518
ApeKI GCWGC 3 cut(s) 343, 645, 701
AsuHPI GGTGA 2 cut(s) 170, 371
BalI TGGCCA 1 cut(s) 520
BbvI GCAGC 3 cut(s) 330, 657, 688
BccI CCATC 2 cut(s) 25, 350
BceAI ACGGC 2 cut(s) 460, 555
BciT130I CCWGG 1 cut(s) 460
BcoDI GTCTC 3 cut(s) 377, 381, 677
BcuI ACTAGT 1 cut(s) 539
BfaI CTAG 4 cut(s) 80, 314, 353, 540
BfmI CTRYAG 1 cut(s) 551
BisI GCNGC 4 cut(s) 341, 344, 646, 702
BlsI GCNGC 4 cut(s) 342, 345, 647, 703
Bme1390I CCNGG 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 460
BmsI GCATC 2 cut(s) 168, 640
BsaBI GATNNNNATC 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 3 cut(s) 151, 292, 571
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 577
Bse8I GATNNNNATC 1 cut(s) 182
BseBI CCWGG 1 cut(s) 460
BseDI CCNNGG 3 cut(s) 151, 292, 571
BseGI GGATG 2 cut(s) 147, 288
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 2 cut(s) 207, 577
BseMII CTCAG 2 cut(s) 388, 489
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 3 cut(s) 330, 657, 688
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 2 cut(s) 110, 520
BslFI GGGAC 2 cut(s) 268, 574
BslI CCNNNNNNNGG 2 cut(s) 207, 577
BsmAI GTCTC 3 cut(s) 377, 381, 677
BsmFI GGGAC 2 cut(s) 268, 574
BsnI GGCC 2 cut(s) 110, 520
Bso31I GGTCTC 1 cut(s) 377
Bsp143I GATC 3 cut(s) 55, 310, 669
BspACI CCGC 1 cut(s) 341
BspANI GGCC 2 cut(s) 110, 520
BspCNI CTCAG 2 cut(s) 387, 490
BspLI GGNNCC 1 cut(s) 14
BspMAI CTGCAG 1 cut(s) 555
BspTNI GGTCTC 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 151, 292, 571
BssMI GATC 3 cut(s) 55, 310, 669
BssT1I CCWWGG 2 cut(s) 151, 292
Bst2UI CCWGG 1 cut(s) 460
Bst4CI ACNGT 1 cut(s) 392
Bst6I CTCTTC 1 cut(s) 612
BstC8I GCNNGC 2 cut(s) 518, 699
BstDEI CTNAG 3 cut(s) 301, 374, 498
BstDSI CCRYGG 1 cut(s) 571
BstF5I GGATG 2 cut(s) 147, 288
BstKTI GATC 3 cut(s) 58, 313, 672
BstMAI GTCTC 3 cut(s) 377, 381, 677
BstMBI GATC 3 cut(s) 55, 310, 669
BstMWI GCNNNNNNNGC 1 cut(s) 631
BstNI CCWGG 1 cut(s) 460
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 1 cut(s) 458
BstSFI CTRYAG 1 cut(s) 551
BstV1I GCAGC 3 cut(s) 330, 657, 688
BsuRI GGCC 2 cut(s) 110, 520
BtgI CCRYGG 1 cut(s) 571
BtgZI GCGATG 1 cut(s) 663
BtsCI GGATG 2 cut(s) 147, 288
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 2 cut(s) 111, 272
Cac8I GCNNGC 2 cut(s) 518, 699
Csp6I GTAC 1 cut(s) 543
CviAII CATG 1 cut(s) 635
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 3 cut(s) 301, 374, 498
DpnI GATC 3 cut(s) 57, 312, 671
DpnII GATC 3 cut(s) 55, 310, 669
DraI TTTAAA 1 cut(s) 475
EaeI YGGCCR 2 cut(s) 108, 518
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco130I CCWWGG 2 cut(s) 151, 292
Eco31I GGTCTC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 458
EcoT14I CCWWGG 2 cut(s) 151, 292
EcoT22I ATGCAT 1 cut(s) 636
ErhI CCWWGG 2 cut(s) 151, 292
FaeI CATG 1 cut(s) 638
FaiI YATR 6 cut(s) 6, 90, 397, 568, 612, 636
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 2 cut(s) 268, 574
FatI CATG 1 cut(s) 634
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 4 cut(s) 341, 344, 646, 702
FokI GGATG 2 cut(s) 134, 275
Fsp4HI GCNGC 4 cut(s) 341, 344, 646, 702
FspBI CTAG 4 cut(s) 80, 314, 353, 540
GluI GCNGC 4 cut(s) 341, 344, 646, 702
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 2 cut(s) 110, 520
Hin1II CATG 1 cut(s) 638
HinfI GANTC 5 cut(s) 221, 233, 297, 455, 685
HphI GGTGA 2 cut(s) 170, 371
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 238, 332
Hpy188III TCNNGA 5 cut(s) 10, 230, 353, 419, 680
Hpy8I GTNNAC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 6 cut(s) 181, 277, 401, 553, 634, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 631
HpyF3I CTNAG 3 cut(s) 301, 374, 498
Hsp92II CATG 1 cut(s) 638
Kzo9I GATC 3 cut(s) 55, 310, 669
LmnI GCTCC 1 cut(s) 580
LpnPI CCDG 9 cut(s) 57, 63, 361, 445, 472, 502, 510, 639, 646
Lsp1109I GCAGC 3 cut(s) 330, 657, 688
LweI GCATC 2 cut(s) 168, 640
MaeI CTAG 4 cut(s) 80, 314, 353, 540
MaeIII GTNAC 1 cut(s) 359
MalI GATC 3 cut(s) 57, 312, 671
MboI GATC 3 cut(s) 55, 310, 669
MboII GAAGA 6 cut(s) 22, 50, 178, 345, 514, 629
MlsI TGGCCA 1 cut(s) 520
MluCI AATT 3 cut(s) 26, 126, 476
MluNI TGGCCA 1 cut(s) 520
MlyI GAGTC 2 cut(s) 449, 679
MmeI TCCRAC 2 cut(s) 261, 264
MnlI CCTC 8 cut(s) 73, 81, 154, 160, 237, 244, 262, 316
Mox20I TGGCCA 1 cut(s) 520
Mph1103I ATGCAT 1 cut(s) 636
MscI TGGCCA 1 cut(s) 520
MseI TTAA 3 cut(s) 474, 479, 709
Msp20I TGGCCA 1 cut(s) 520
MspA1I CMGCKG 2 cut(s) 53, 343
MspR9I CCNGG 1 cut(s) 460
MvaI CCWGG 1 cut(s) 460
MwoI GCNNNNNNNGC 1 cut(s) 631
NdeII GATC 3 cut(s) 55, 310, 669
NlaIII CATG 1 cut(s) 638
NlaIV GGNNCC 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 359
NsiI ATGCAT 1 cut(s) 636
NspI RCATGY 1 cut(s) 638
PfeI GAWTC 3 cut(s) 221, 233, 297
PflMI CCANNNNNTGG 1 cut(s) 207
PfoI TCCNGGA 1 cut(s) 458
PkrI GCNGC 4 cut(s) 342, 345, 647, 703
PleI GAGTC 2 cut(s) 449, 679
PpsI GAGTC 2 cut(s) 449, 679
Psp6I CCWGG 1 cut(s) 458
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 458
PspN4I GGNNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
SaqAI TTAA 3 cut(s) 474, 479, 709
SatI GCNGC 4 cut(s) 341, 344, 646, 702
Sau3AI GATC 3 cut(s) 55, 310, 669
SchI GAGTC 2 cut(s) 449, 679
ScrFI CCNGG 1 cut(s) 460
SetI ASST 9 cut(s) 46, 55, 73, 141, 165, 307, 471, 486, 585
SfaNI GCATC 2 cut(s) 168, 640
SfcI CTRYAG 1 cut(s) 551
SpeI ACTAGT 1 cut(s) 539
Sse9I AATT 3 cut(s) 26, 126, 476
SsiI CCGC 1 cut(s) 341
SspMI CTAG 4 cut(s) 80, 314, 353, 540
StyD4I CCNGG 1 cut(s) 458
StyI CCWWGG 2 cut(s) 151, 292
TaaI ACNGT 1 cut(s) 392
TaqI TCGA 2 cut(s) 231, 672
TasI AATT 3 cut(s) 26, 126, 476
TatI WGTACW 1 cut(s) 542
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 3 cut(s) 221, 233, 297
Tru1I TTAA 3 cut(s) 474, 479, 709
Tru9I TTAA 3 cut(s) 474, 479, 709
TscAI CASTG 2 cut(s) 118, 279
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 3 cut(s) 343, 645, 701
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 449, 599
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 2 cut(s) 118, 279
Van91I CCANNNNNTGG 1 cut(s) 207
XbaI TCTAGA 1 cut(s) 352
XceI RCATGY 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 4 cut(s) 80, 314, 353, 540
Zsp2I ATGCAT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.