RLG00000017616

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000082
Physical Location & Seq
Reverse (-)
19181838 .. 19183415
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017616

Sequence Viewer

Length: 492 bp
ATGTTTTCATCGAGAGCTCGCGTTTGGAAGAGTATTCAAGCCGCTGGCAATTCCCCTGCCTTATATGCCACTGGTCACGGAATTCTTCTGAACGAGGCACTTCATTGGGTGGAGGATGAATTCGATCATGAAATCCTTGTCTTTGATTTGTTACAGGAGGAGTTCAGGAAAATGCGTTTGCCTAATTTTCAGCAGCGTCTTGGGTTCTTACCTGCGCTGCTCGGGGTTTCTTTTGGAGGATGCCTGTGTGTATGCCGTCGTCCCATCACTGCTTGTGACTCTATCGATTTCTGGGTCATGAGAGACTATGACCTGCGTGGTGACTCGTGGACTAAGCTTCTTAACTTAAAGCTGTCCGATTCTCCTCAGGGACCTATTATGGTTATGGAAAGCAGTATTATTGCCCAGAGATGGACTTCCGACGGGAGCTGTTTGTCCCTTCACTTGCTCTTTACATGTAACTGCTGGGGTGATGTACGATTGCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

164

Amino Acids

18.57

Weight (kDa)

5.51

Isoelectric Point (pI)

59.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 5 - 123 2.5e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 220, 321
AccII CGCG 1 cut(s) 21
AciI CCGC 1 cut(s) 42
AcsI RAATTY 2 cut(s) 81, 119
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 1 cut(s) 411
AflIII ACRYGT 1 cut(s) 455
AgsI TTSAA 1 cut(s) 38
AluBI AGCT 4 cut(s) 17, 337, 352, 429
AluI AGCT 4 cut(s) 17, 337, 352, 429
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 297
Ama87I CYCGRG 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 193, 217
ApoI RAATTY 2 cut(s) 81, 119
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 2 cut(s) 332, 482
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 371
AxyI CCTNAGG 1 cut(s) 366
BanII GRGCYC 1 cut(s) 19
BauI CACGAG 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 204, 205
BccI CCATC 2 cut(s) 272, 405
BceAI ACGGC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 297
BfuAI ACCTGC 2 cut(s) 220, 321
BisI GCNGC 3 cut(s) 42, 194, 218
BlsI GCNGC 3 cut(s) 43, 195, 219
Bme18I GGWCC 1 cut(s) 371
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 372
BmsI GCATC 1 cut(s) 230
Bsa29I ATCGAT 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 76
Bse21I CCTNAGG 1 cut(s) 366
BseCI ATCGAT 1 cut(s) 285
BseGI GGATG 2 cut(s) 121, 245
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 2 cut(s) 173, 354
BseXI GCAGC 2 cut(s) 204, 205
BseYI CCCAGC 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 21
BshVI ATCGAT 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 221
BslFI GGGAC 3 cut(s) 246, 384, 421
BslI CCNNNNNNNGG 1 cut(s) 411
BsmAI GTCTC 1 cut(s) 297
BsmFI GGGAC 3 cut(s) 246, 384, 421
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 379
BspDI ATCGAT 1 cut(s) 285
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 2 cut(s) 127, 297
BspLI GGNNCC 1 cut(s) 372
BspMI ACCTGC 2 cut(s) 220, 321
BsrI ACTGG 1 cut(s) 76
BssMI GATC 1 cut(s) 124
BssSI CACGAG 1 cut(s) 325
Bst2BI CACGAG 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 19, 46
BstDEI CTNAG 2 cut(s) 333, 366
BstF5I GGATG 2 cut(s) 121, 245
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 459
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 204, 205
Bsu15I ATCGAT 1 cut(s) 285
Bsu36I CCTNAGG 1 cut(s) 366
BsuTUI ATCGAT 1 cut(s) 285
BtsCI GGATG 2 cut(s) 121, 245
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 69, 267
BveI ACCTGC 2 cut(s) 220, 321
Cac8I GCNNGC 2 cut(s) 19, 46
CciI TCATGA 2 cut(s) 127, 297
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 371
ClaI ATCGAT 1 cut(s) 285
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 476
CviAII CATG 3 cut(s) 128, 298, 456
CviJI RGCY 5 cut(s) 17, 41, 337, 352, 429
CviKI_1 RGCY 5 cut(s) 17, 41, 337, 352, 429
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 2 cut(s) 333, 366
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 17
Eco81I CCTNAGG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 371
EcoRI GAATTC 2 cut(s) 81, 119
EcoT38I GRGCYC 1 cut(s) 19
FaeI CATG 3 cut(s) 131, 301, 459
FaiI YATR 9 cut(s) 64, 66, 129, 253, 299, 309, 380, 386, 457
FaqI GGGAC 3 cut(s) 246, 384, 421
FatI CATG 3 cut(s) 127, 297, 455
Fnu4HI GCNGC 3 cut(s) 42, 194, 218
FokI GGATG 2 cut(s) 128, 252
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 3 cut(s) 42, 194, 218
GlaI GCGC 1 cut(s) 216
GluI GCNGC 3 cut(s) 42, 194, 218
GsaI CCCAGC 1 cut(s) 469
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 217
Hin1II CATG 3 cut(s) 131, 301, 459
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 3 cut(s) 278, 323, 359
HphI GGTGA 2 cut(s) 332, 482
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 3 cut(s) 90, 358, 421
Hpy188III TCNNGA 4 cut(s) 12, 128, 166, 298
Hpy8I GTNNAC 1 cut(s) 330
Hpy99I CGWCG 2 cut(s) 261, 425
HpyAV CCTTC 1 cut(s) 449
HpyCH4V TGCA 1 cut(s) 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 333, 366
Hsp92II CATG 3 cut(s) 131, 301, 459
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 426
Lsp1109I GCAGC 2 cut(s) 204, 205
LweI GCATC 1 cut(s) 230
MaeIII GTNAC 5 cut(s) 74, 150, 275, 320, 458
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 2 cut(s) 40, 77
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 4 cut(s) 49, 81, 119, 184
MlyI GAGTC 2 cut(s) 272, 317
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 5 cut(s) 88, 106, 151, 230, 375
MseI TTAA 3 cut(s) 342, 347, 490
MspA1I CMGCKG 1 cut(s) 44
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 1 cut(s) 124
NlaIII CATG 3 cut(s) 131, 301, 459
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 3 cut(s) 74, 275, 320
NspI RCATGY 1 cut(s) 459
PagI TCATGA 2 cut(s) 127, 297
PciI ACATGT 1 cut(s) 455
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 3 cut(s) 43, 195, 219
PleI GAGTC 2 cut(s) 272, 317
PpsI GAGTC 2 cut(s) 272, 317
PpuMI RGGWCCY 1 cut(s) 371
PscI ACATGT 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 1 cut(s) 371
PspPPI RGGWCCY 1 cut(s) 371
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
SacI GAGCTC 1 cut(s) 19
SaqAI TTAA 3 cut(s) 342, 347, 490
SatI GCNGC 3 cut(s) 42, 194, 218
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 2 cut(s) 272, 317
SduI GDGCHC 1 cut(s) 19
SetI ASST 7 cut(s) 19, 214, 315, 339, 354, 376, 431
SfaNI GCATC 1 cut(s) 230
SinI GGWCC 1 cut(s) 371
Sse9I AATT 4 cut(s) 49, 81, 119, 184
SsiI CCGC 1 cut(s) 42
SstI GAGCTC 1 cut(s) 19
TaqI TCGA 3 cut(s) 11, 123, 285
TasI AATT 4 cut(s) 49, 81, 119, 184
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 3 cut(s) 342, 347, 490
Tru9I TTAA 3 cut(s) 342, 347, 490
TscAI CASTG 2 cut(s) 76, 274
TseFI GTSAC 3 cut(s) 74, 275, 320
TseI GCWGC 2 cut(s) 193, 217
Tsp45I GTSAC 3 cut(s) 74, 275, 320
TspDTI ATGAA 3 cut(s) 92, 132, 144
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 2 cut(s) 76, 274
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 2 cut(s) 81, 119
XceI RCATGY 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.