Rorug02G0510300

Peptidase, trypsin-like serine and cysteine proteases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000082
Physical Location & Seq
Reverse (-)
64108617 .. 64109346
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0510300.1

Sequence Viewer

Length: 657 bp
ATGTCTCCTATCAATTCCCAGCTTCAATTAAAGTTGTTGATACTAGCAGCACTAGCAAGGTCTGCCACGCCTTCCCACAACTACGCGGATCGATATACGCTTTGTCCAAGAAGGTCGGGATCGTTACCGCGTACCCAACGAGTGACTTGGAGGAAAGATTCAGCTCTCCATGACGGCAATGACGTTCATATGGATCTGGTAGGGGGTTACTATGACGCTGGAGACAACGTGAAGTTCAACTTTCCCATGGCATTCACAACAGCAATGTTGTCTTGGAGTGTTCTAGAGTTTGGTGAATCAATGGGCTCAGAACTTCCATATGCTTCGGAAGCTATAAGATGGGGCACTGATTACTTGCTTAAATCCACAGATGAAACTGGTTCTGTTGCCGGCTTTGTTGGAGACCCCGTAGGCGACCACACTTGTTGGGAAAGACCCGAAGATATGGACACTCCTCGAACATCCTACATAGTAACCAGAGAAAAGCCAGGCAAAGAAGTATCTGCCGAAACGCTGAAACTGCAGCTGCCCTTGCAGCTTCTTCCATGGTTTTACAGGTTCGGACGACTGATAAGTACAGAGGATCTTATAACGACAACATTGGGGAAGTGGCGTGCCCGTTTTACTGCGATTTCAATGGCTACATGGATGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.55

Weight (kDa)

6.09

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 38 - 171 2.4e-49 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
AccII CGCG 2 cut(s) 86, 130
AciI CCGC 2 cut(s) 86, 128
AclWI GGATC 4 cut(s) 96, 127, 201, 591
AfaI GTAC 2 cut(s) 133, 577
AgsI TTSAA 3 cut(s) 26, 238, 636
AjnI CCWGG 1 cut(s) 487
AluBI AGCT 5 cut(s) 22, 164, 332, 526, 538
AluI AGCT 5 cut(s) 22, 164, 332, 526, 538
Alw26I GTCTC 3 cut(s) 9, 216, 396
AlwI GGATC 4 cut(s) 96, 127, 201, 591
ApeKI GCWGC 4 cut(s) 47, 523, 526, 535
AsuHPI GGTGA 1 cut(s) 305
BaeGI GKGCMC 2 cut(s) 347, 619
BanII GRGCYC 1 cut(s) 308
BbvI GCAGC 4 cut(s) 59, 513, 535, 547
BccI CCATC 1 cut(s) 333
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 489
BcoDI GTCTC 3 cut(s) 9, 216, 396
BfaI CTAG 3 cut(s) 44, 53, 284
BfmI CTRYAG 1 cut(s) 521
BisI GCNGC 4 cut(s) 48, 524, 527, 536
BlsI GCNGC 4 cut(s) 49, 525, 528, 537
Bme1390I CCNGG 1 cut(s) 489
BmrFI CCNGG 1 cut(s) 489
BpmI CTGGAG 1 cut(s) 240
Bsa29I ATCGAT 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 246, 545
BsaXI ACNNNNNCTCC 4 cut(s) 213, 243, 393, 423
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 382
Bse3DI GCAATG 2 cut(s) 184, 270
BseBI CCWGG 1 cut(s) 489
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 246, 545
BseGI GGATG 2 cut(s) 461, 654
BseMI GCAATG 2 cut(s) 184, 270
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 1 cut(s) 444
BseSI GKGCMC 2 cut(s) 347, 619
BseXI GCAGC 4 cut(s) 59, 513, 535, 547
BseYI CCCAGC 1 cut(s) 18
Bsh1236I CGCG 2 cut(s) 86, 130
BshVI ATCGAT 1 cut(s) 91
BsiSI CCGG 1 cut(s) 390
BsmAI GTCTC 3 cut(s) 9, 216, 396
BsmI GAATGC 1 cut(s) 251
Bso31I GGTCTC 1 cut(s) 396
Bsp1286I GDGCHC 3 cut(s) 308, 347, 619
Bsp143I GATC 4 cut(s) 88, 119, 193, 583
Bsp19I CCATGG 2 cut(s) 246, 545
BspACI CCGC 2 cut(s) 86, 128
BspCNI CTCAG 1 cut(s) 320
BspDI ATCGAT 1 cut(s) 91
BspFNI CGCG 2 cut(s) 86, 130
BspMAI CTGCAG 1 cut(s) 525
BspPI GGATC 4 cut(s) 96, 127, 201, 591
BspTNI GGTCTC 1 cut(s) 396
BsrDI GCAATG 2 cut(s) 184, 270
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 246, 545
BssMI GATC 4 cut(s) 88, 119, 193, 583
BssT1I CCWWGG 2 cut(s) 246, 545
Bst2UI CCWGG 1 cut(s) 489
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 391, 615
BstDEI CTNAG 1 cut(s) 307
BstDSI CCRYGG 2 cut(s) 246, 545
BstF5I GGATG 2 cut(s) 461, 654
BstFNI CGCG 2 cut(s) 86, 130
BstKTI GATC 4 cut(s) 91, 122, 196, 586
BstMAI GTCTC 3 cut(s) 9, 216, 396
BstMBI GATC 4 cut(s) 88, 119, 193, 583
BstMWI GCNNNNNNNGC 6 cut(s) 53, 62, 329, 520, 532, 535
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 487
BstSFI CTRYAG 1 cut(s) 521
BstSLI GKGCMC 2 cut(s) 347, 619
BstUI CGCG 2 cut(s) 86, 130
BstV1I GCAGC 4 cut(s) 59, 513, 535, 547
BstX2I RGATCY 2 cut(s) 193, 583
BstYI RGATCY 2 cut(s) 193, 583
Bsu15I ATCGAT 1 cut(s) 91
BsuTUI ATCGAT 1 cut(s) 91
BtgI CCRYGG 2 cut(s) 246, 545
BtsCI GGATG 2 cut(s) 461, 654
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 391, 615
Cfr10I RCCGGY 1 cut(s) 389
ClaI ATCGAT 1 cut(s) 91
CseI GACGC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 132, 576
CspCI CAANNNNNGTGG 2 cut(s) 407, 442
CviAII CATG 4 cut(s) 170, 247, 546, 645
CviJI RGCY 9 cut(s) 22, 164, 306, 332, 393, 487, 526, 538, 641
CviKI_1 RGCY 9 cut(s) 22, 164, 306, 332, 393, 487, 526, 538, 641
CviQI GTAC 2 cut(s) 132, 576
DdeI CTNAG 1 cut(s) 307
DpnI GATC 4 cut(s) 90, 121, 195, 585
DpnII GATC 4 cut(s) 88, 119, 193, 583
Eco130I CCWWGG 2 cut(s) 246, 545
Eco24I GRGCYC 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 2 cut(s) 246, 545
EcoT38I GRGCYC 1 cut(s) 308
ErhI CCWWGG 2 cut(s) 246, 545
FaeI CATG 4 cut(s) 173, 250, 549, 648
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FatI CATG 4 cut(s) 169, 246, 545, 644
FauNDI CATATG 2 cut(s) 189, 319
Fnu4HI GCNGC 4 cut(s) 48, 524, 527, 536
FokI GGATG 1 cut(s) 448
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 4 cut(s) 48, 524, 527, 536
FspBI CTAG 3 cut(s) 44, 53, 284
GluI GCNGC 4 cut(s) 48, 524, 527, 536
GsaI CCCAGC 1 cut(s) 22
GsuI CTGGAG 1 cut(s) 240
HapII CCGG 1 cut(s) 390
HgaI GACGC 1 cut(s) 224
Hin1II CATG 4 cut(s) 173, 250, 549, 648
HinfI GANTC 2 cut(s) 158, 296
HpaII CCGG 1 cut(s) 390
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 3 cut(s) 310, 328, 563
Hpy188III TCNNGA 2 cut(s) 117, 284
HpyAV CCTTC 2 cut(s) 81, 105
HpyCH4IV ACGT 2 cut(s) 183, 228
HpyCH4V TGCA 2 cut(s) 523, 535
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 62, 329, 520, 532, 535
HpyF3I CTNAG 1 cut(s) 307
HpySE526I ACGT 2 cut(s) 183, 228
Hsp92II CATG 4 cut(s) 173, 250, 549, 648
KroI GCCGGC 1 cut(s) 389
KroNI GCCGGC 1 cut(s) 391
Kzo9I GATC 4 cut(s) 88, 119, 193, 583
LpnPI CCDG 9 cut(s) 32, 182, 204, 363, 403, 474, 490, 501, 541
Lsp1109I GCAGC 4 cut(s) 59, 513, 535, 547
MaeI CTAG 3 cut(s) 44, 53, 284
MaeII ACGT 2 cut(s) 183, 228
MaeIII GTNAC 4 cut(s) 123, 142, 206, 472
MalI GATC 4 cut(s) 90, 121, 195, 585
MboI GATC 4 cut(s) 88, 119, 193, 583
MboII GAAGA 2 cut(s) 452, 533
MflI RGATCY 2 cut(s) 193, 583
MhlI GDGCHC 3 cut(s) 308, 347, 619
MluCI AATT 2 cut(s) 13, 26
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 3 cut(s) 144, 465, 574
MroNI GCCGGC 1 cut(s) 389
MseI TTAA 2 cut(s) 29, 360
MspA1I CMGCKG 1 cut(s) 526
MspI CCGG 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 489
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 2 cut(s) 86, 130
MwoI GCNNNNNNNGC 6 cut(s) 53, 62, 329, 520, 532, 535
NaeI GCCGGC 1 cut(s) 391
NcoI CCATGG 2 cut(s) 246, 545
NdeI CATATG 2 cut(s) 189, 319
NdeII GATC 4 cut(s) 88, 119, 193, 583
NgoMIV GCCGGC 1 cut(s) 389
NlaIII CATG 4 cut(s) 173, 250, 549, 648
NmuCI GTSAC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 251
PdiI GCCGGC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 158, 296
PkrI GCNGC 4 cut(s) 49, 525, 528, 537
PsiI TTATAA 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 487
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 1 cut(s) 487
PstI CTGCAG 1 cut(s) 525
PsuI RGATCY 2 cut(s) 193, 583
PvuII CAGCTG 1 cut(s) 526
RsaI GTAC 2 cut(s) 133, 577
RsaNI GTAC 2 cut(s) 132, 576
SaqAI TTAA 2 cut(s) 29, 360
SatI GCNGC 4 cut(s) 48, 524, 527, 536
Sau3AI GATC 4 cut(s) 88, 119, 193, 583
ScrFI CCNGG 1 cut(s) 489
SduI GDGCHC 3 cut(s) 308, 347, 619
SfcI CTRYAG 1 cut(s) 521
Sse9I AATT 2 cut(s) 13, 26
SsiI CCGC 2 cut(s) 86, 128
SspMI CTAG 3 cut(s) 44, 53, 284
StyD4I CCNGG 1 cut(s) 487
StyI CCWWGG 2 cut(s) 246, 545
TaiI ACGT 2 cut(s) 186, 231
TaqI TCGA 2 cut(s) 91, 457
TasI AATT 2 cut(s) 13, 26
TatI WGTACW 1 cut(s) 575
TfiI GAWTC 2 cut(s) 158, 296
Tru1I TTAA 2 cut(s) 29, 360
Tru9I TTAA 2 cut(s) 29, 360
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 4 cut(s) 47, 523, 526, 535
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 176, 387
TspRI CASTG 1 cut(s) 352
XbaI TCTAGA 1 cut(s) 283
XspI CTAG 3 cut(s) 44, 53, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.