FvH4_6g15010

F-box protein CPR30-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000082
Physical Location & Seq
Reverse (-)
9315913 .. 9319682
3770 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15010.t1

Sequence Viewer

Length: 717 bp
ATGTCTCGCTACTGTGCTCGTGCAACGGTCCTCGCTTATGGCGTTGGGTATTTTCCGGCCACCAATGACTACAGATTTTTCGTAGCCTCCGCTGATTCTTTATCTGTTGACAAGGATAAGGCCGCAATTTTCTCGTCCAGAGCTCACGCTTGGGAAACACTTGAGGAGGTCGATTCGGATGAGTTCTCTTTTGTCTCTGATCAGGGGATTCTTTTGAAAGAGGCACTTCATTGGGTGGATAACCGAGAGGATCAAATCTTGGCTTTTGATTTGGGTCAGGAGGAGACGCACAAGTTTAGGAAAATGTTGCTGCCGCGGGATTTCAGTGATGACGGAGGTTACAACTATGAGAACCATCTTGGAGTTTCTGCTGGAGGATGCCTGTCTCTAGCTCATAATTTAAGGGCTTCCCTTGACTACATTGATGTATGGGTCATGGGAGAGTATGGTGTGCGTGACTCGTGGACTAAGCTCTTTAACTTGAAGCTTTTGGATCCCCCTAAGGACGTTCGATGGTATTACAATCATGTCTTGGTTCTCGAAACTAGTATGGTTACCCAAATATATGTTGGCGAGAGGAGAAAGGTTAAGGTTGGGTTGATAAAGATTGTACAGAAAGAAGAAGACAAGTGTAGCCGCGAATCGTATTATAAAGTTAACCGCGAATGGATTACCATGATTGACTATCAAGAGAGTCTACTTTGGATAGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

239

Amino Acids

27.67

Weight (kDa)

5.06

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 651
AccI GTMKAC 1 cut(s) 697
AccII CGCG 3 cut(s) 316, 639, 663
AciI CCGC 6 cut(s) 90, 123, 314, 316, 637, 661
AclWI GGATC 3 cut(s) 258, 488, 501
AcoI YGGCCR 1 cut(s) 57
AfaI GTAC 1 cut(s) 612
AgsI TTSAA 2 cut(s) 217, 484
AhlI ACTAGT 1 cut(s) 545
AluBI AGCT 4 cut(s) 143, 392, 472, 487
AluI AGCT 4 cut(s) 143, 392, 472, 487
Alw21I GWGCWC 2 cut(s) 19, 145
Alw26I GTCTC 4 cut(s) 9, 199, 278, 390
AlwI GGATC 3 cut(s) 258, 488, 501
AoxI GGCC 2 cut(s) 57, 120
ApeKI GCWGC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 28
AvaII GGWCC 1 cut(s) 28
AxyI CCTNAGG 1 cut(s) 501
BamHI GGATCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 145
BauI CACGAG 2 cut(s) 18, 460
BbsI GAAGAC 1 cut(s) 630
Bbv12I GWGCWC 2 cut(s) 19, 145
BbvI GCAGC 1 cut(s) 297
BccI CCATC 2 cut(s) 363, 507
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 4 cut(s) 9, 199, 278, 390
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 2 cut(s) 389, 546
BfmI CTRYAG 1 cut(s) 70
BisI GCNGC 4 cut(s) 123, 311, 314, 637
BlsI GCNGC 4 cut(s) 124, 312, 315, 638
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 495
BmsI GCATC 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 630
BpmI CTGGAG 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 314
Bse21I CCTNAGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 2 cut(s) 184, 383
BseRI GAGGAG 3 cut(s) 179, 296, 592
BseXI GCAGC 1 cut(s) 297
Bsh1236I CGCG 3 cut(s) 316, 639, 663
BshFI GGCC 2 cut(s) 59, 122
BsiHKAI GWGCWC 2 cut(s) 19, 145
BsiSI CCGG 1 cut(s) 56
BsmAI GTCTC 4 cut(s) 9, 199, 278, 390
BsmBI CGTCTC 1 cut(s) 278
BsnI GGCC 2 cut(s) 59, 122
Bsp1286I GDGCHC 2 cut(s) 19, 145
Bsp1407I TGTACA 1 cut(s) 610
Bsp143I GATC 3 cut(s) 199, 250, 493
BspACI CCGC 6 cut(s) 90, 123, 314, 316, 637, 661
BspANI GGCC 2 cut(s) 59, 122
BspFNI CGCG 3 cut(s) 316, 639, 663
BspLI GGNNCC 1 cut(s) 495
BspPI GGATC 3 cut(s) 258, 488, 501
BsrGI TGTACA 1 cut(s) 610
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 3 cut(s) 199, 250, 493
BssSI CACGAG 2 cut(s) 18, 460
Bst2BI CACGAG 2 cut(s) 18, 460
Bst4CI ACNGT 2 cut(s) 14, 28
BstAUI TGTACA 1 cut(s) 610
BstDEI CTNAG 2 cut(s) 468, 501
BstDSI CCRYGG 1 cut(s) 314
BstEII GGTNACC 1 cut(s) 553
BstF5I GGATG 2 cut(s) 184, 383
BstFNI CGCG 3 cut(s) 316, 639, 663
BstKTI GATC 3 cut(s) 202, 253, 496
BstMAI GTCTC 4 cut(s) 9, 199, 278, 390
BstMBI GATC 3 cut(s) 199, 250, 493
BstPI GGTNACC 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 70
BstUI CGCG 3 cut(s) 316, 639, 663
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 630
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
Bsu36I CCTNAGG 1 cut(s) 501
BsuRI GGCC 2 cut(s) 59, 122
BtgI CCRYGG 1 cut(s) 314
BtsCI GGATG 2 cut(s) 184, 383
BtsIMutI CAGTG 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 28
Cfr42I CCGCGG 1 cut(s) 317
CseI GACGC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 611
CviAII CATG 3 cut(s) 436, 527, 676
CviQI GTAC 1 cut(s) 611
DdeI CTNAG 2 cut(s) 468, 501
DpnI GATC 3 cut(s) 201, 252, 495
DpnII GATC 3 cut(s) 199, 250, 493
EaeI YGGCCR 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 143
Eco81I CCTNAGG 1 cut(s) 501
Eco91I GGTNACC 1 cut(s) 553
EcoICRI GAGCTC 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 278
FaeI CATG 3 cut(s) 439, 530, 679
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 3 cut(s) 435, 526, 675
FauI CCCGC 1 cut(s) 309
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 697
Fnu4HI GCNGC 4 cut(s) 123, 311, 314, 637
FokI GGATG 2 cut(s) 191, 390
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 4 cut(s) 123, 311, 314, 637
FspBI CTAG 2 cut(s) 389, 546
GluI GCNGC 4 cut(s) 123, 311, 314, 637
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 2 cut(s) 59, 122
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 295
Hin1II CATG 3 cut(s) 439, 530, 679
HincII GTYRAC 2 cut(s) 109, 658
HindII GTYRAC 2 cut(s) 109, 658
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 6 cut(s) 95, 173, 208, 458, 641, 694
HpaI GTTAAC 1 cut(s) 658
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 4 cut(s) 109, 465, 658, 698
Hpy188I TCNGA 2 cut(s) 178, 199
Hpy188III TCNNGA 4 cut(s) 138, 278, 539, 689
Hpy8I GTNNAC 4 cut(s) 109, 465, 658, 698
HpyCH4III ACNGT 2 cut(s) 14, 28
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 468, 501
HpySE526I ACGT 1 cut(s) 507
Hsp92II CATG 3 cut(s) 439, 530, 679
Ksp22I TGATCA 1 cut(s) 199
KspAI GTTAAC 1 cut(s) 658
KspI CCGCGG 1 cut(s) 317
Kzo9I GATC 3 cut(s) 199, 250, 493
LpnPI CCDG 6 cut(s) 69, 151, 188, 263, 357, 395
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 1 cut(s) 368
MaeI CTAG 2 cut(s) 389, 546
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 3 cut(s) 338, 455, 553
MalI GATC 3 cut(s) 201, 252, 495
MboI GATC 3 cut(s) 199, 250, 493
MboII GAAGA 2 cut(s) 632, 635
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 2 cut(s) 19, 145
MluCI AATT 2 cut(s) 126, 397
MlyI GAGTC 2 cut(s) 452, 703
MseI TTAA 4 cut(s) 401, 477, 588, 657
MspA1I CMGCKG 2 cut(s) 92, 316
MspI CCGG 1 cut(s) 56
MvnI CGCG 3 cut(s) 316, 639, 663
NdeII GATC 3 cut(s) 199, 250, 493
NlaIII CATG 3 cut(s) 439, 530, 679
NlaIV GGNNCC 1 cut(s) 495
NmuCI GTSAC 1 cut(s) 455
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 4 cut(s) 95, 173, 208, 641
PkrI GCNGC 4 cut(s) 124, 312, 315, 638
PleI GAGTC 2 cut(s) 452, 702
PpsI GAGTC 2 cut(s) 452, 702
PsiI TTATAA 1 cut(s) 651
Psp124BI GAGCTC 1 cut(s) 145
PspEI GGTNACC 1 cut(s) 553
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 1 cut(s) 28
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
SacI GAGCTC 1 cut(s) 145
SacII CCGCGG 1 cut(s) 317
SaqAI TTAA 4 cut(s) 401, 477, 588, 657
SatI GCNGC 4 cut(s) 123, 311, 314, 637
Sau3AI GATC 3 cut(s) 199, 250, 493
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 2 cut(s) 452, 703
SduI GDGCHC 2 cut(s) 19, 145
SetI ASST 9 cut(s) 145, 171, 340, 394, 474, 489, 510, 588, 594
SfaNI GCATC 1 cut(s) 368
SfcI CTRYAG 1 cut(s) 70
Sfr303I CCGCGG 1 cut(s) 317
SgrBI CCGCGG 1 cut(s) 317
SinI GGWCC 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 2 cut(s) 126, 397
SsiI CCGC 6 cut(s) 90, 123, 314, 316, 637, 661
SspMI CTAG 2 cut(s) 389, 546
SstI GAGCTC 1 cut(s) 145
TaaI ACNGT 2 cut(s) 14, 28
TaiI ACGT 1 cut(s) 510
TaqI TCGA 3 cut(s) 171, 511, 540
TasI AATT 2 cut(s) 126, 397
TatI WGTACW 1 cut(s) 610
TauI GCSGC 3 cut(s) 125, 316, 639
TfiI GAWTC 4 cut(s) 95, 173, 208, 641
Tru1I TTAA 4 cut(s) 401, 477, 588, 657
Tru9I TTAA 4 cut(s) 401, 477, 588, 657
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 1 cut(s) 218
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 566
XmiI GTMKAC 1 cut(s) 697
XspI CTAG 2 cut(s) 389, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.