Rroxscaffold_2G00135940

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000082
Physical Location & Seq
Forward (+)
73466672 .. 73472020
5349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135940.1

Sequence Viewer

Length: 1326 bp
ATGGCCGATTATGCTTGCAAATGTACATGTATGTACAAATATGATTACCGGGTATTATTAGGGGTAATAAAATCGGACGCCGAATCCAGTTACCAATTGTCGGATTCCGGTCATCGGTTGTCGATTCCCATCACCGGTTGTAGAATTCCGGTCACCGGAGTTCACGACCGGCCACTCTTCACCGGAGTCCGGCGAGGGCATCGTTCTCATAGTTCCGTCAGTCTCTCACTCTCTTCCGCAGGGTGCTTCAGCTCTCACCGTGCAATGGCGGAAACAGTAAACCTACCGGAAGAGATCATAGTGAATATCCTTATTTGGTTGCCCGTCAAGTCCTTAATCCGATTCACCTCCGTTTCGAAACGTCTGCGTTTCATTATACTGTCCGATCCCAAATTCGCCGAATCCCAACTTAAAGCGGCTCGTCAGCAGAAAACCCTCAGCCGCAGACTCCTCGTCTCCACCGACGCCCCTCGACTCGAAATCGACTCCCTAGACTTTGATACGCCGTCGTTTGGAGAGCCTTCCTCCTTTAGAAAGCTCAGTCTCCCTTTCCACCAGCAACCCGTTCGTTTTGTCAAGCTGCTGGGCTCCTGCAATGGTCTGGTATTTGTAGCTGTTGATGATAAGTTGTTTTATATCTGGAACCCGTCCATTGAATTCTTCAACCAATTGCCTGACCCCCCTGGATTTTCCTCAATTCTTTCTATTACCTTTTCTGGTGTCGGCTATATGTCGGCCACCGATGACTACAAAGTTCTGGTGGCCTCCGTTTGGAGGACAGAGGTGTGGATGTTTTCATCGAGAGCTCGCGTTTGGAAGAGAATTCAAGTCGCTGGCAATTCCCCTGCCTTATATGCCACTGGTCACGCAATTCTTCTGAACGAGGCACTTCATTGGGTGGAGGATGTATTCGATCATGAAATCCTTGTCTTTGATTTGTTACAAGAGGAGTTCAGGAAAATGCGTTTGCCTAATTTTCAGCAACGTCTTGGGTTCTTACCTGCGCTGCTCGGGGTTTCTTTTGGAGGATGCCTGTGTTTATGCCGTCGTCCCATCGCTGCTTGTGACTCTATCGATTTCTGGGTCATGAGAGAATATGACTTGCGTGGTGACTCGTGGACTAAGCTTCTTAACTTAAAGCTGTCCGATCCTCCTCAGGGACCTATTATGGTTATGGAAAGCAGTATTATTGCCCAGAGATGGACTGCTGACGGGAGCTGTTTGGTAAATATTGATCATAAAAAAGAAGAGAAGCTTGGCGTGATTCTGGGTAATTCGCTCAAGATGATACCGTATGAGGAGAGTTTACTTCGGATTACTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

441

Amino Acids

49.83

Weight (kDa)

8.56

Isoelectric Point (pI)

59.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 94 - 131 6e-08 F-box domain
F-box-like PF12937 94 - 129 3.6e-06 F-box-like
FBA_3 PF08268 181 - 375 1.4e-12 F-box associated beta propeller domain
FBA_1 PF07734 185 - 425 1e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1009
AccII CGCG 1 cut(s) 810
AciI CCGC 4 cut(s) 237, 269, 416, 442
AclWI GGATC 2 cut(s) 380, 1142
AcoI YGGCCR 3 cut(s) 3, 170, 735
AcsI RAATTY 4 cut(s) 144, 392, 656, 822
AcuI CTGAAG 1 cut(s) 232
AcyI GRCGYC 2 cut(s) 78, 465
AfaI GTAC 2 cut(s) 25, 35
AflIII ACRYGT 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 3 cut(s) 656, 664, 827
AhdI GACNNNNNGTC 1 cut(s) 452
AjnI CCWGG 1 cut(s) 682
AjuI GAANNNNNNNTTGG 2 cut(s) 1239, 1271
AluBI AGCT 9 cut(s) 252, 538, 580, 614, 806, 1126, 1141, 1218, 1255
AluI AGCT 9 cut(s) 252, 538, 580, 614, 806, 1126, 1141, 1218, 1255
Alw21I GWGCWC 1 cut(s) 808
Alw26I GTCTC 3 cut(s) 227, 460, 548
AlwI GGATC 2 cut(s) 380, 1142
Ama87I CYCGRG 1 cut(s) 1010
AoxI GGCC 4 cut(s) 3, 170, 735, 762
ApeKI GCWGC 3 cut(s) 580, 1006, 1058
ApoI RAATTY 4 cut(s) 144, 392, 656, 822
AsiGI ACCGGT 1 cut(s) 134
AspLEI GCGC 1 cut(s) 1006
AspS9I GGNCC 1 cut(s) 1160
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 6 cut(s) 124, 145, 172, 248, 337, 1121
AsuII TTCGAA 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 1010
AvaII GGWCC 1 cut(s) 1160
AxyI CCTNAGG 1 cut(s) 1155
BanII GRGCYC 2 cut(s) 590, 808
BauI CACGAG 1 cut(s) 1114
Bbv12I GWGCWC 1 cut(s) 808
BbvCI CCTCAGC 1 cut(s) 437
BbvI GCAGC 3 cut(s) 567, 993, 1045
BccI CCATC 3 cut(s) 137, 1061, 1194
BceAI ACGGC 2 cut(s) 490, 1029
BcgI CGANNNNNNTGC 6 cut(s) 346, 380, 433, 467, 548, 582
BciT130I CCWGG 1 cut(s) 684
BclI TGATCA 1 cut(s) 1234
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 3 cut(s) 227, 460, 548
BfaI CTAG 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 1009
BisI GCNGC 5 cut(s) 417, 442, 581, 1007, 1059
BlsI GCNGC 5 cut(s) 418, 443, 582, 1008, 1060
Bme1390I CCNGG 2 cut(s) 50, 684
Bme18I GGWCC 1 cut(s) 1160
BmeRI GACNNNNNGTC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 1010
BmgT120I GGNCC 1 cut(s) 1160
BmiI GGNNCC 3 cut(s) 589, 644, 1161
BmrFI CCNGG 2 cut(s) 50, 684
BmsI GCATC 2 cut(s) 208, 1019
BplI GAGNNNNNCTC 2 cut(s) 509, 541
Bpu10I CCTNAGC 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 1265
BpuMI CCSGG 1 cut(s) 50
Bsa29I ATCGAT 1 cut(s) 1074
BsaBI GATNNNNATC 1 cut(s) 128
BsaHI GRCGYC 2 cut(s) 78, 465
BsaJI CCNNGG 1 cut(s) 682
BsaWI WCCGGW 6 cut(s) 107, 134, 148, 155, 182, 286
Bse118I RCCGGY 2 cut(s) 134, 168
Bse1I ACTGG 2 cut(s) 87, 865
Bse21I CCTNAGG 1 cut(s) 1155
Bse3DI GCAATG 2 cut(s) 270, 601
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 1 cut(s) 684
BseCI ATCGAT 1 cut(s) 1074
BseDI CCNNGG 1 cut(s) 682
BseGI GGATG 3 cut(s) 795, 910, 1034
BseJI GATNNNNATC 1 cut(s) 128
BseMI GCAATG 2 cut(s) 270, 601
BseMII CTCAG 3 cut(s) 451, 553, 1169
BseNI ACTGG 2 cut(s) 87, 865
BseRI GAGGAG 4 cut(s) 440, 962, 1143, 1313
BseXI GCAGC 3 cut(s) 567, 993, 1045
BseYI CCCAGC 1 cut(s) 583
Bsh1236I CGCG 1 cut(s) 810
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 4 cut(s) 5, 172, 737, 764
BshTI ACCGGT 1 cut(s) 134
BshVI ATCGAT 1 cut(s) 1074
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 808
BsiHKCI CYCGRG 1 cut(s) 1010
BsiSI CCGG 9 cut(s) 49, 108, 135, 149, 156, 169, 183, 190, 287
BslFI GGGAC 2 cut(s) 1035, 1173
BsmAI GTCTC 3 cut(s) 227, 460, 548
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 2 cut(s) 1035, 1173
BsnI GGCC 4 cut(s) 5, 172, 737, 764
BsoBI CYCGRG 1 cut(s) 1010
Bsp119I TTCGAA 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 590, 808
Bsp1407I TGTACA 2 cut(s) 23, 33
Bsp143I GATC 5 cut(s) 294, 385, 913, 1147, 1234
BspACI CCGC 4 cut(s) 237, 269, 416, 442
BspANI GGCC 4 cut(s) 5, 172, 737, 764
BspCNI CTCAG 3 cut(s) 450, 552, 1168
BspDI ATCGAT 1 cut(s) 1074
BspFNI CGCG 1 cut(s) 810
BspHI TCATGA 2 cut(s) 916, 1086
BspLI GGNNCC 3 cut(s) 589, 644, 1161
BspMI ACCTGC 1 cut(s) 1009
BspPI GGATC 2 cut(s) 380, 1142
BspT104I TTCGAA 1 cut(s) 356
BsrDI GCAATG 2 cut(s) 270, 601
BsrFI RCCGGY 2 cut(s) 134, 168
BsrGI TGTACA 2 cut(s) 23, 33
BsrI ACTGG 2 cut(s) 87, 865
BssAI RCCGGY 2 cut(s) 134, 168
BssECI CCNNGG 1 cut(s) 682
BssMI GATC 5 cut(s) 294, 385, 913, 1147, 1234
BssNI GRCGYC 2 cut(s) 78, 465
BssSI CACGAG 1 cut(s) 1114
Bst2BI CACGAG 1 cut(s) 1114
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 5 cut(s) 260, 277, 381, 1293, 1321
Bst6I CTCTTC 5 cut(s) 182, 238, 285, 812, 1242
BstACI GRCGYC 2 cut(s) 78, 465
BstAUI TGTACA 2 cut(s) 23, 33
BstBI TTCGAA 1 cut(s) 356
BstC8I GCNNGC 3 cut(s) 16, 808, 835
BstDEI CTNAG 4 cut(s) 437, 539, 1122, 1155
BstEII GGTNACC 1 cut(s) 151
BstF5I GGATG 3 cut(s) 795, 910, 1034
BstFNI CGCG 1 cut(s) 810
BstHHI GCGC 1 cut(s) 1006
BstKTI GATC 5 cut(s) 297, 388, 916, 1150, 1237
BstMAI GTCTC 3 cut(s) 227, 460, 548
BstMBI GATC 5 cut(s) 294, 385, 913, 1147, 1234
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 11, 854
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 1 cut(s) 30
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 48, 682
BstUI CGCG 1 cut(s) 810
BstV1I GCAGC 3 cut(s) 567, 993, 1045
Bsu15I ATCGAT 1 cut(s) 1074
Bsu36I CCTNAGG 1 cut(s) 1155
BsuRI GGCC 4 cut(s) 5, 172, 737, 764
BsuTUI ATCGAT 1 cut(s) 1074
BtgZI GCGATG 1 cut(s) 1039
BtsCI GGATG 3 cut(s) 795, 910, 1034
BtsIMutI CAGTG 1 cut(s) 858
BveI ACCTGC 1 cut(s) 1009
Cac8I GCNNGC 3 cut(s) 16, 808, 835
CciI TCATGA 2 cut(s) 916, 1086
CfoI GCGC 1 cut(s) 1006
Cfr10I RCCGGY 2 cut(s) 134, 168
Cfr13I GGNCC 1 cut(s) 1160
ClaI ATCGAT 1 cut(s) 1074
CseI GACGC 2 cut(s) 86, 473
Csp6I GTAC 2 cut(s) 24, 34
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 3 cut(s) 27, 917, 1087
CviQI GTAC 2 cut(s) 24, 34
DdeI CTNAG 4 cut(s) 437, 539, 1122, 1155
DpnI GATC 5 cut(s) 296, 387, 915, 1149, 1236
DpnII GATC 5 cut(s) 294, 385, 913, 1147, 1234
DriI GACNNNNNGTC 1 cut(s) 452
EaeI YGGCCR 3 cut(s) 3, 170, 735
Eam1104I CTCTTC 5 cut(s) 182, 238, 285, 812, 1242
Eam1105I GACNNNNNGTC 1 cut(s) 452
EarI CTCTTC 5 cut(s) 182, 238, 285, 812, 1242
EciI GGCGGA 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 806
Eco24I GRGCYC 2 cut(s) 590, 808
Eco47I GGWCC 1 cut(s) 1160
Eco53kI GAGCTC 1 cut(s) 806
Eco57I CTGAAG 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 1155
Eco88I CYCGRG 1 cut(s) 1010
Eco91I GGTNACC 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 1160
EcoO65I GGTNACC 1 cut(s) 151
EcoRI GAATTC 3 cut(s) 144, 656, 822
EcoRII CCWGG 1 cut(s) 682
EcoT38I GRGCYC 2 cut(s) 590, 808
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 3 cut(s) 30, 920, 1090
FalI AAGNNNNNCTT 2 cut(s) 1239, 1271
FaqI GGGAC 2 cut(s) 1035, 1173
FatI CATG 3 cut(s) 26, 916, 1086
FbaI TGATCA 1 cut(s) 1234
Fnu4HI GCNGC 5 cut(s) 417, 442, 581, 1007, 1059
FokI GGATG 3 cut(s) 802, 917, 1041
FriOI GRGCYC 2 cut(s) 590, 808
Fsp4HI GCNGC 5 cut(s) 417, 442, 581, 1007, 1059
FspBI CTAG 1 cut(s) 491
GlaI GCGC 1 cut(s) 1005
GluI GCNGC 5 cut(s) 417, 442, 581, 1007, 1059
GsaI CCCAGC 1 cut(s) 587
HaeIII GGCC 4 cut(s) 5, 172, 737, 764
HapII CCGG 9 cut(s) 49, 108, 135, 149, 156, 169, 183, 190, 287
HgaI GACGC 2 cut(s) 86, 473
HhaI GCGC 1 cut(s) 1006
Hin1I GRCGYC 2 cut(s) 78, 465
Hin1II CATG 3 cut(s) 30, 920, 1090
Hin6I GCGC 1 cut(s) 1004
HinP1I GCGC 1 cut(s) 1004
HindIII AAGCTT 2 cut(s) 1124, 1253
HpaII CCGG 9 cut(s) 49, 108, 135, 149, 156, 169, 183, 190, 287
HphI GGTGA 6 cut(s) 124, 145, 172, 248, 337, 1121
Hpy166II GTNNAC 4 cut(s) 163, 280, 1119, 1307
Hpy188I TCNGA 7 cut(s) 76, 103, 341, 385, 879, 1147, 1314
Hpy188III TCNNGA 7 cut(s) 164, 640, 801, 917, 955, 1087, 1282
Hpy8I GTNNAC 4 cut(s) 163, 280, 1119, 1307
Hpy99I CGWCG 3 cut(s) 467, 511, 1050
HpyAV CCTTC 1 cut(s) 531
HpyCH4III ACNGT 5 cut(s) 260, 277, 381, 1293, 1321
HpyCH4IV ACGT 2 cut(s) 361, 985
HpyCH4V TGCA 3 cut(s) 18, 263, 594
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 854
HpyF3I CTNAG 4 cut(s) 437, 539, 1122, 1155
HpySE526I ACGT 2 cut(s) 361, 985
Hsp92I GRCGYC 2 cut(s) 78, 465
Hsp92II CATG 3 cut(s) 30, 920, 1090
HspAI GCGC 1 cut(s) 1004
Ksp22I TGATCA 1 cut(s) 1234
Kzo9I GATC 5 cut(s) 294, 385, 913, 1147, 1234
LmnI GCTCC 2 cut(s) 593, 1215
Lsp1109I GCAGC 3 cut(s) 567, 993, 1045
LweI GCATC 2 cut(s) 208, 1019
MaeI CTAG 1 cut(s) 491
MaeII ACGT 2 cut(s) 361, 985
MaeIII GTNAC 6 cut(s) 89, 151, 863, 939, 1064, 1109
MalI GATC 5 cut(s) 296, 387, 915, 1149, 1236
MboI GATC 5 cut(s) 294, 385, 913, 1147, 1234
MboII GAAGA 7 cut(s) 169, 225, 302, 652, 829, 866, 1259
MfeI CAATTG 2 cut(s) 95, 668
MhlI GDGCHC 2 cut(s) 590, 808
MlyI GAGTC 6 cut(s) 195, 441, 468, 479, 1061, 1106
MmeI TCCRAC 1 cut(s) 81
MseI TTAA 4 cut(s) 335, 411, 1131, 1136
MspI CCGG 9 cut(s) 49, 108, 135, 149, 156, 169, 183, 190, 287
MspR9I CCNGG 2 cut(s) 50, 684
MunI CAATTG 2 cut(s) 95, 668
MvaI CCWGG 1 cut(s) 684
MvnI CGCG 1 cut(s) 810
MwoI GCNNNNNNNGC 2 cut(s) 11, 854
NciI CCSGG 1 cut(s) 50
NdeII GATC 5 cut(s) 294, 385, 913, 1147, 1234
NlaIII CATG 3 cut(s) 30, 920, 1090
NlaIV GGNNCC 3 cut(s) 589, 644, 1161
NmuCI GTSAC 4 cut(s) 151, 863, 1064, 1109
NspI RCATGY 1 cut(s) 30
NspV TTCGAA 1 cut(s) 356
PagI TCATGA 2 cut(s) 916, 1086
PciI ACATGT 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PfeI GAWTC 6 cut(s) 83, 104, 124, 342, 401, 1264
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 5 cut(s) 418, 443, 582, 1008, 1060
PleI GAGTC 6 cut(s) 194, 441, 468, 479, 1061, 1106
PpsI GAGTC 6 cut(s) 194, 441, 468, 479, 1061, 1106
PpuMI RGGWCCY 1 cut(s) 1160
PscI ACATGT 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 808
Psp5II RGGWCCY 1 cut(s) 1160
Psp6I CCWGG 1 cut(s) 682
PspEI GGTNACC 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 3 cut(s) 589, 644, 1161
PspPI GGNCC 1 cut(s) 1160
PspPPI RGGWCCY 1 cut(s) 1160
RsaI GTAC 2 cut(s) 25, 35
RsaNI GTAC 2 cut(s) 24, 34
SacI GAGCTC 1 cut(s) 808
SaqAI TTAA 4 cut(s) 335, 411, 1131, 1136
SatI GCNGC 5 cut(s) 417, 442, 581, 1007, 1059
Sau3AI GATC 5 cut(s) 294, 385, 913, 1147, 1234
Sau96I GGNCC 1 cut(s) 1160
SchI GAGTC 6 cut(s) 195, 441, 468, 479, 1061, 1106
ScrFI CCNGG 2 cut(s) 50, 684
SduI GDGCHC 2 cut(s) 590, 808
SfaNI GCATC 2 cut(s) 208, 1019
SfuI TTCGAA 1 cut(s) 356
SinI GGWCC 1 cut(s) 1160
SmlI CTYRAG 1 cut(s) 1280
SmoI CTYRAG 1 cut(s) 1280
SsiI CCGC 4 cut(s) 237, 269, 416, 442
SspI AATATT 1 cut(s) 1231
SspMI CTAG 1 cut(s) 491
SstI GAGCTC 1 cut(s) 808
StyD4I CCNGG 2 cut(s) 48, 682
TaaI ACNGT 5 cut(s) 260, 277, 381, 1293, 1321
TaiI ACGT 2 cut(s) 364, 988
TaqI TCGA 8 cut(s) 122, 356, 472, 477, 483, 800, 912, 1074
TatI WGTACW 2 cut(s) 23, 33
TauI GCSGC 2 cut(s) 419, 444
TfiI GAWTC 6 cut(s) 83, 104, 124, 342, 401, 1264
Tru1I TTAA 4 cut(s) 335, 411, 1131, 1136
Tru9I TTAA 4 cut(s) 335, 411, 1131, 1136
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 4 cut(s) 151, 863, 1064, 1109
TseI GCWGC 3 cut(s) 580, 1006, 1058
Tsp45I GTSAC 4 cut(s) 151, 863, 1064, 1109
TspDTI ATGAA 4 cut(s) 361, 786, 881, 933
TspGWI ACGGA 3 cut(s) 205, 340, 757
TspRI CASTG 1 cut(s) 865
VpaK11BI GGWCC 1 cut(s) 1160
XapI RAATTY 4 cut(s) 144, 392, 656, 822
XceI RCATGY 1 cut(s) 30
XspI CTAG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.