Rroxscaffold_2G00135930

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000082
Physical Location & Seq
Forward (+)
73448548 .. 73451340
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135930.1

Sequence Viewer

Length: 444 bp
ATGCCACTGCCTAATTTCGACCGTGATGGTAAGACTTTCAGCAAGCTTGGGGTTTGTGGAGGGTGCCTGTGTGTATCGCGTTATCCGGATGGTGCTTTTGACTCTATTGATTTCTGGGTCATGAAGGAATATGGCGTCAGTGGCTCATGGATTATGCTCTTTAGCTTAAAGCTCTCCCATCCGCCTGAGTTGCCCTCACGTTTCGGCCAATTCTTGGTTCTGGAAAGTAGTACAGTTGCCGCGAGATGGACTGCCGAGGGGTCCAAGTTGATAAAGATTGATCATAAAGAAGACGAGAAGCTTGGGCGGTATATGCTTAAGGGTGTTCGCATGTGTATGATTGAATATGAAGAGAGTCTACTTTGGATTAGTAGTTATCATCCAGTTGAAAAGAAAGAGCAGGTCCAGATACTCAAAACCCATCAGAAGGCCTCAGGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

147

Amino Acids

16.71

Weight (kDa)

7.67

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 391
AccB1I GGYRCC 1 cut(s) 63
AccB7I CCANNNNNTGG 1 cut(s) 214
AccI GTMKAC 1 cut(s) 358
AccII CGCG 2 cut(s) 79, 242
AccIII TCCGGA 1 cut(s) 85
AciI CCGC 3 cut(s) 182, 240, 307
AcoI YGGCCR 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 3 cut(s) 214, 246, 427
AflII CTTAAG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 344, 389
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 5 cut(s) 46, 165, 172, 301, 441
AluI AGCT 5 cut(s) 46, 165, 172, 301, 441
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 2 cut(s) 205, 429
AspS9I GGNCC 2 cut(s) 261, 403
AvaII GGWCC 2 cut(s) 261, 403
AxyI CCTNAGG 1 cut(s) 433
BanI GGYRCC 1 cut(s) 63
BarI GAAGNNNNNNTAC 2 cut(s) 342, 374
BbsI GAAGAC 1 cut(s) 297
BccI CCATC 5 cut(s) 20, 83, 186, 240, 429
BclI TGATCA 1 cut(s) 280
BfrI CTTAAG 1 cut(s) 317
BfuAI ACCTGC 1 cut(s) 391
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme18I GGWCC 2 cut(s) 261, 403
BmgT120I GGNCC 2 cut(s) 261, 403
BmiI GGNNCC 2 cut(s) 65, 262
BpiI GAAGAC 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 255
BsaWI WCCGGW 1 cut(s) 85
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 246, 427
Bse1I ACTGG 1 cut(s) 383
Bse21I CCTNAGG 1 cut(s) 433
BseAI TCCGGA 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 3 cut(s) 94, 178, 379
BseLI CCNNNNNNNGG 3 cut(s) 214, 246, 427
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 383
Bsh1236I CGCG 2 cut(s) 79, 242
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 207, 431
BshNI GGYRCC 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 22
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 3 cut(s) 214, 246, 427
BsnI GGCC 2 cut(s) 207, 431
Bsp13I TCCGGA 1 cut(s) 85
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 3 cut(s) 182, 240, 307
BspANI GGCC 2 cut(s) 207, 431
BspCNI CTCAG 1 cut(s) 178
BspEI TCCGGA 1 cut(s) 85
BspFNI CGCG 2 cut(s) 79, 242
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 65, 262
BspMI ACCTGC 1 cut(s) 391
BspT107I GGYRCC 1 cut(s) 63
BspTI CTTAAG 1 cut(s) 317
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 280
BssNI GRCGYC 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 23, 235
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 135
BstAFI CTTAAG 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 186, 433
BstF5I GGATG 3 cut(s) 94, 178, 379
BstFNI CGCG 2 cut(s) 79, 242
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 3 cut(s) 141, 190, 313
BstNSI RCATGY 1 cut(s) 334
BstUI CGCG 2 cut(s) 79, 242
BstV2I GAAGAC 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 433
BsuRI GGCC 2 cut(s) 207, 431
BtsCI GGATG 3 cut(s) 94, 178, 379
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 5, 145
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 44
CciI TCATGA 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 261, 403
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 231
CviAII CATG 3 cut(s) 121, 147, 331
CviJI RGCY 8 cut(s) 46, 144, 165, 172, 207, 301, 431, 441
CviKI_1 RGCY 8 cut(s) 46, 144, 165, 172, 207, 301, 431, 441
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 186, 433
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
EciI GGCGGA 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 431
Eco47I GGWCC 2 cut(s) 261, 403
Eco81I CCTNAGG 1 cut(s) 433
FaeI CATG 3 cut(s) 124, 150, 334
FatI CATG 3 cut(s) 120, 146, 330
FbaI TGATCA 1 cut(s) 280
FblI GTMKAC 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 3 cut(s) 101, 165, 366
Fsp4HI GCNGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 2 cut(s) 207, 431
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 3 cut(s) 124, 150, 334
HindIII AAGCTT 2 cut(s) 44, 299
HinfI GANTC 2 cut(s) 101, 355
HpaII CCGG 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 1 cut(s) 426
Hpy188III TCNNGA 5 cut(s) 86, 121, 221, 406, 435
Hpy8I GTNNAC 1 cut(s) 359
HpyAV CCTTC 2 cut(s) 118, 421
HpyCH4III ACNGT 2 cut(s) 23, 235
HpyCH4IV ACGT 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 190, 313
HpyF3I CTNAG 2 cut(s) 186, 433
HpySE526I ACGT 1 cut(s) 199
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 3 cut(s) 124, 150, 334
Kpn2I TCCGGA 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 9 cut(s) 80, 99, 100, 198, 206, 386, 396, 419, 420
MaeII ACGT 1 cut(s) 199
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 2 cut(s) 302, 362
MluCI AATT 2 cut(s) 13, 209
MlyI GAGTC 2 cut(s) 95, 364
MnlI CCTC 4 cut(s) 53, 205, 250, 442
MroI TCCGGA 1 cut(s) 85
MseI TTAA 2 cut(s) 167, 318
MslI CAYNNNNRTG 1 cut(s) 335
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 1 cut(s) 86
MvnI CGCG 2 cut(s) 79, 242
MwoI GCNNNNNNNGC 3 cut(s) 141, 190, 313
NdeII GATC 1 cut(s) 280
NlaIII CATG 3 cut(s) 124, 150, 334
NlaIV GGNNCC 2 cut(s) 65, 262
NmeAIII GCCGAG 1 cut(s) 280
NspI RCATGY 1 cut(s) 334
PagI TCATGA 1 cut(s) 120
PceI AGGCCT 1 cut(s) 431
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 2 cut(s) 95, 363
PpsI GAGTC 2 cut(s) 95, 363
PspN4I GGNNCC 2 cut(s) 65, 262
PspPI GGNCC 2 cut(s) 261, 403
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 2 cut(s) 167, 318
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 2 cut(s) 261, 403
SchI GAGTC 2 cut(s) 95, 364
SetI ASST 7 cut(s) 48, 167, 174, 202, 303, 405, 443
SinI GGWCC 2 cut(s) 261, 403
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 2 cut(s) 13, 209
SseBI AGGCCT 1 cut(s) 431
SsiI CCGC 3 cut(s) 182, 240, 307
StuI AGGCCT 1 cut(s) 431
TaaI ACNGT 2 cut(s) 23, 235
TaiI ACGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 18
TasI AATT 2 cut(s) 13, 209
TatI WGTACW 1 cut(s) 230
TauI GCSGC 1 cut(s) 242
Tru1I TTAA 2 cut(s) 167, 318
Tru9I TTAA 2 cut(s) 167, 318
TscAI CASTG 2 cut(s) 12, 145
TspDTI ATGAA 2 cut(s) 137, 363
TspRI CASTG 2 cut(s) 12, 145
Van91I CCANNNNNTGG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 317
VpaK11BI GGWCC 2 cut(s) 261, 403
XceI RCATGY 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.