Rh5BG397600

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000082
Physical Location & Seq
Forward (+)
64456954 .. 64460651
3698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG397600.1

Sequence Viewer

Length: 1608 bp
ATGGCGGAGGATTGCTTACCCGAACATGTGATATTCAGAATCCTGGAGAGGTTGCCGATCAAATCCCTAATCCGCTTCACCTCCGTTTCGAAACGCTGGCGTTTCATCATCTCCTCCGACCCCATTTTCGCCAAATCCCACTTCCACATAGCTTCTCACCACCAAACCCTGACTGGCAGACTCCTCCTCTCCGACGGCCGTGGCTCTCAATTCGAATCCCGAGACCTGGAGACGCCCTCGTCGTTCCGAGACAAGTCCTCCGTCAGAAACCTCAGGTGCCCATTGAAGCAACCCATCAGACAACGAGGTGGTGATGTATGCGCACTCTGCTCCTGCAATGGTTTGGTCCTCGCAACTCTCCTTGCCCAACAAAACAGAATGTATATCTGGAACCCATCCACTTCATTCTTCAAACAATTGCCTGCTCTTCCCTCAAAATTTCACTCTCTGCGCTTTTATGGTTTTGGCTATGTTTCCGCTACTGATAGCTACAAAGTCATTGCAAAGCGTCGTCTTGACCCACGAACGGAGGAGGATGATGGGAGCGCCCTTATCTTCTCATCCAAACCCAACATTTGGAAGAGGATCGAATCCCCTCTTTTTTCCAAAATGGCATATAAGGGGGCTCTTGTGAATGAGGCACTTCATTGGCTCAGCTACCGTGATGTGGTTATCATTGCTTTTGATTTGGCGAAAGAGGAGCTCCGAACAATGCCGCTGCCTGAGCATAATAATGTGGAGAATTTCGGGTATCTTGGGGCTTTTGGAAGCTGCCTGTGTGTATATGATGAGGCCTATATTAAGTCTGGCTCTGTTGATTTGTGGGTCATGAGAGACTATGGTGTTGCTGACTCCTGGACTAAGATGTTTCGCTTGAAGGTTTCCGATAGGCCTGAGGATATTAATTATTTGAAGCCAATCTTGGTTACGGAAACTAGTACATTTCTGCTAAAAGGGACTTTTGATAGCGGTAGGAAGTTGGAGTGCAAGTTGATAAGGAGTGGTCATGAGAATGAGCAGCTTGAAACATATATGCTTAGCAAGCAAATTGACAACATGCTGGCATATGAAGAGAGTCTACTTCGGCCTGGTAACTACAATAAAAGGACTTGCCCAATTGAACTAGCCAAGAAAGCTAGAAATGCTTCAGAAGCTAGAAATAATGGAGAACAGGGTAGAGTAAATCTCAATGAGGATAACCAGGGGCCACATACTGTCAATGTGTGTGTTCAAAACCAGGGCAGCAGCTCTGTTGATGTCCAAGTGAAAACCAAAGAAACTAGGGCAAAGGAGCAGGTCAAGAGAGCACCAAACAGATCAGGAAAGGTTGGAGCGCTATCTGCTGTAGCTCAAACATCACTAACAGTTCAAGCAACCTTAAAGCCTGTTCAGTCATCATCCCCTGAATCTTCGACACAGCCTCAATCATCAAGGAACACTGTGTATCCGAAATCTCGTGTTGACCCAGTCACTGGTTGGTCACAGAGGTCCAAGACTGGGGCAATAAAGTGTAACAAGACACCAGAGAAGCCAAATGGACCAAAACAACTAAGCAGGCCAACAGCAGAGACTTCTGATCTCAAGCAGCAGCCCAACAGAGACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

535

Amino Acids

60.33

Weight (kDa)

9.45

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 43 3.3e-10 F-box domain
F-box-like PF12937 5 - 43 1.5e-07 F-box-like
FBA_1 PF07734 95 - 299 1.2e-19 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 103 - 249 2.5e-08 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 104 - 290 5.6e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 238
Acc16I TGCGCA 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 1285
AccB1I GGYRCC 1 cut(s) 276
AccB7I CCANNNNNTGG 2 cut(s) 576, 1472
AccI GTMKAC 1 cut(s) 1078
AciI CCGC 5 cut(s) 5, 73, 477, 716, 969
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 2 cut(s) 437, 742
AcuI CTGAAG 1 cut(s) 1131
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 1 cut(s) 940
AfeI AGCGCT 1 cut(s) 1335
AfiI CCNNNNNNNGG 6 cut(s) 226, 526, 576, 667, 1472, 1497
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 8 cut(s) 286, 412, 877, 913, 1025, 1121, 1232, 1370
AhlI ACTAGT 1 cut(s) 935
AjnI CCWGG 6 cut(s) 42, 225, 854, 1087, 1200, 1236
AjuI GAANNNNNNNTTGG 4 cut(s) 125, 157, 905, 937
Alw21I GWGCWC 2 cut(s) 705, 1309
Alw26I GTCTC 6 cut(s) 216, 224, 243, 828, 1562, 1593
AlwI GGATC 1 cut(s) 593
AlwNI CAGNNNCTG 1 cut(s) 1472
Ama87I CYCGRG 1 cut(s) 219
Aor51HI AGCGCT 1 cut(s) 1335
AoxI GGCC 6 cut(s) 196, 792, 890, 1085, 1205, 1556
ApeKI GCWGC 7 cut(s) 718, 771, 1018, 1242, 1245, 1585, 1588
ApoI RAATTY 2 cut(s) 437, 742
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AseI ATTAAT 1 cut(s) 903
Asp700I GAANNNNTTC 1 cut(s) 1144
AspLEI GCGC 4 cut(s) 323, 453, 548, 1336
AspS9I GGNCC 4 cut(s) 346, 1205, 1488, 1538
AsuHPI GGTGA 3 cut(s) 70, 149, 323
AsuII TTCGAA 2 cut(s) 89, 213
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 3 cut(s) 346, 1488, 1538
AxyI CCTNAGG 2 cut(s) 272, 894
BaeGI GKGCMC 1 cut(s) 281
BanI GGYRCC 1 cut(s) 276
BanII GRGCYC 2 cut(s) 628, 705
BarI GAAGNNNNNNTAC 2 cut(s) 1062, 1094
BauI CACGAG 1 cut(s) 1455
Bbv12I GWGCWC 2 cut(s) 705, 1309
BbvI GCAGC 7 cut(s) 705, 758, 1030, 1254, 1257, 1597, 1600
BccI CCATC 3 cut(s) 302, 403, 533
BceAI ACGGC 2 cut(s) 183, 211
BciT130I CCWGG 6 cut(s) 44, 227, 856, 1089, 1202, 1238
BciVI GTATCC 1 cut(s) 1455
BcoDI GTCTC 6 cut(s) 216, 224, 243, 828, 1562, 1593
BcuI ACTAGT 1 cut(s) 935
BfaI CTAG 5 cut(s) 936, 1124, 1137, 1155, 1281
BfmI CTRYAG 1 cut(s) 1344
BfoI RGCGCY 2 cut(s) 549, 1337
BfuAI ACCTGC 1 cut(s) 1285
BfuI GTATCC 1 cut(s) 1455
BisI GCNGC 8 cut(s) 716, 719, 772, 1019, 1243, 1246, 1586, 1589
BlpI GCTNAGC 2 cut(s) 653, 1037
BlsI GCNGC 8 cut(s) 717, 720, 773, 1020, 1244, 1247, 1587, 1590
Bme1390I CCNGG 6 cut(s) 44, 227, 856, 1089, 1202, 1238
Bme18I GGWCC 3 cut(s) 346, 1488, 1538
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 4 cut(s) 346, 1205, 1488, 1538
BmiI GGNNCC 3 cut(s) 278, 392, 1206
BmrFI CCNGG 6 cut(s) 44, 227, 856, 1089, 1202, 1238
BmrI ACTGGG 2 cut(s) 1460, 1506
BmuI ACTGGG 2 cut(s) 1460, 1506
BplI GAGNNNNNCTC 4 cut(s) 221, 253, 1170, 1202
BpmI CTGGAG 2 cut(s) 65, 248
Bpu10I CCTNAGC 1 cut(s) 723
Bpu1102I GCTNAGC 2 cut(s) 653, 1037
Bpu14I TTCGAA 2 cut(s) 89, 213
BpuEI CTTGAG 1 cut(s) 1565
BsaHI GRCGYC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 199, 1201, 1237
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 974, 1004
Bsc4I CCNNNNNNNGG 6 cut(s) 226, 526, 576, 667, 1472, 1497
Bse1I ACTGG 4 cut(s) 178, 1466, 1477, 1501
Bse21I CCTNAGG 2 cut(s) 272, 894
Bse3DI GCAATG 3 cut(s) 343, 498, 675
BseBI CCWGG 6 cut(s) 44, 227, 856, 1089, 1202, 1238
BseDI CCNNGG 3 cut(s) 199, 1201, 1237
BseGI GGATG 4 cut(s) 395, 541, 560, 1397
BseLI CCNNNNNNNGG 6 cut(s) 226, 526, 576, 667, 1472, 1497
BseMI GCAATG 3 cut(s) 343, 498, 675
BseMII CTCAG 4 cut(s) 286, 667, 714, 885
BseNI ACTGG 4 cut(s) 178, 1466, 1477, 1501
BseRI GAGGAG 5 cut(s) 103, 173, 176, 545, 713
BseSI GKGCMC 1 cut(s) 281
BseX3I CGGCCG 1 cut(s) 196
BseXI GCAGC 7 cut(s) 705, 758, 1030, 1254, 1257, 1597, 1600
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 6 cut(s) 198, 794, 892, 1087, 1207, 1558
BshNI GGYRCC 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 2 cut(s) 705, 1309
BsiHKCI CYCGRG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 970
BslI CCNNNNNNNGG 6 cut(s) 226, 526, 576, 667, 1472, 1497
BsmAI GTCTC 6 cut(s) 216, 224, 243, 828, 1562, 1593
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 970
BsnI GGCC 6 cut(s) 198, 794, 892, 1087, 1207, 1558
Bso31I GGTCTC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 219
Bsp119I TTCGAA 2 cut(s) 89, 213
Bsp1286I GDGCHC 4 cut(s) 281, 628, 705, 1309
Bsp143I GATC 4 cut(s) 57, 585, 1316, 1576
Bsp1720I GCTNAGC 2 cut(s) 653, 1037
BspACI CCGC 5 cut(s) 5, 73, 477, 716, 969
BspANI GGCC 6 cut(s) 198, 794, 892, 1087, 1207, 1558
BspCNI CTCAG 4 cut(s) 285, 666, 715, 886
BspHI TCATGA 2 cut(s) 828, 1006
BspLI GGNNCC 3 cut(s) 278, 392, 1206
BspMI ACCTGC 1 cut(s) 1285
BspPI GGATC 1 cut(s) 593
BspQI GCTCTTC 1 cut(s) 432
BspT104I TTCGAA 2 cut(s) 89, 213
BspT107I GGYRCC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 216
BsrDI GCAATG 3 cut(s) 343, 498, 675
BsrI ACTGG 4 cut(s) 178, 1466, 1477, 1501
BssECI CCNNGG 3 cut(s) 199, 1201, 1237
BssMI GATC 4 cut(s) 57, 585, 1316, 1576
BssNI GRCGYC 1 cut(s) 233
BssSI CACGAG 1 cut(s) 1455
Bst2BI CACGAG 1 cut(s) 1455
Bst2UI CCWGG 6 cut(s) 44, 227, 856, 1089, 1202, 1238
Bst4CI ACNGT 4 cut(s) 662, 1216, 1366, 1441
Bst6I CTCTTC 3 cut(s) 432, 575, 1065
BstACI GRCGYC 1 cut(s) 233
BstBI TTCGAA 2 cut(s) 89, 213
BstC8I GCNNGC 5 cut(s) 98, 423, 1043, 1062, 1556
BstDEI CTNAG 7 cut(s) 272, 653, 723, 861, 894, 1037, 1550
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 4 cut(s) 395, 541, 560, 1397
BstH2I RGCGCY 2 cut(s) 549, 1337
BstHHI GCGC 4 cut(s) 323, 453, 548, 1336
BstKTI GATC 4 cut(s) 60, 588, 1319, 1579
BstMAI GTCTC 6 cut(s) 216, 224, 243, 828, 1562, 1593
BstMBI GATC 4 cut(s) 57, 585, 1316, 1576
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 7 cut(s) 327, 724, 1042, 1133, 1142, 1151, 1340
BstNI CCWGG 6 cut(s) 44, 227, 856, 1089, 1202, 1238
BstNSI RCATGY 2 cut(s) 29, 1060
BstSCI CCNGG 6 cut(s) 42, 225, 854, 1087, 1200, 1236
BstSFI CTRYAG 1 cut(s) 1344
BstSLI GKGCMC 1 cut(s) 281
BstV1I GCAGC 7 cut(s) 705, 758, 1030, 1254, 1257, 1597, 1600
BstZI CGGCCG 1 cut(s) 196
Bsu36I CCTNAGG 2 cut(s) 272, 894
BsuI GTATCC 1 cut(s) 1455
BsuRI GGCC 6 cut(s) 198, 794, 892, 1087, 1207, 1558
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 4 cut(s) 395, 541, 560, 1397
BtsIMutI CAGTG 2 cut(s) 1437, 1470
BveI ACCTGC 1 cut(s) 1285
Cac8I GCNNGC 5 cut(s) 98, 423, 1043, 1062, 1556
CaiI CAGNNNCTG 1 cut(s) 1472
CciI TCATGA 2 cut(s) 828, 1006
CfoI GCGC 4 cut(s) 323, 453, 548, 1336
Cfr13I GGNCC 4 cut(s) 346, 1205, 1488, 1538
CseI GACGC 2 cut(s) 241, 497
Csp6I GTAC 1 cut(s) 939
CviAII CATG 4 cut(s) 26, 829, 1007, 1057
CviQI GTAC 1 cut(s) 939
DdeI CTNAG 7 cut(s) 272, 653, 723, 861, 894, 1037, 1550
DpnI GATC 4 cut(s) 59, 587, 1318, 1578
DpnII GATC 4 cut(s) 57, 585, 1316, 1576
DrdI GACNNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 196
EagI CGGCCG 1 cut(s) 196
Eam1104I CTCTTC 3 cut(s) 432, 575, 1065
EarI CTCTTC 3 cut(s) 432, 575, 1065
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 703
EclXI CGGCCG 1 cut(s) 196
Eco147I AGGCCT 2 cut(s) 794, 892
Eco24I GRGCYC 2 cut(s) 628, 705
Eco31I GGTCTC 1 cut(s) 216
Eco47I GGWCC 3 cut(s) 346, 1488, 1538
Eco47III AGCGCT 1 cut(s) 1335
Eco52I CGGCCG 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 1131
Eco81I CCTNAGG 2 cut(s) 272, 894
Eco88I CYCGRG 1 cut(s) 219
EcoICRI GAGCTC 1 cut(s) 703
EcoRII CCWGG 6 cut(s) 42, 225, 854, 1087, 1200, 1236
EcoT38I GRGCYC 2 cut(s) 628, 705
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 4 cut(s) 29, 832, 1010, 1060
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FaqI GGGAC 1 cut(s) 970
FatI CATG 4 cut(s) 25, 828, 1006, 1056
FauNDI CATATG 1 cut(s) 1066
FblI GTMKAC 1 cut(s) 1078
Fnu4HI GCNGC 8 cut(s) 716, 719, 772, 1019, 1243, 1246, 1586, 1589
FokI GGATG 4 cut(s) 382, 547, 548, 1384
FriOI GRGCYC 2 cut(s) 628, 705
Fsp4HI GCNGC 8 cut(s) 716, 719, 772, 1019, 1243, 1246, 1586, 1589
FspAI RTGCGCAY 1 cut(s) 322
FspBI CTAG 5 cut(s) 936, 1124, 1137, 1155, 1281
FspI TGCGCA 1 cut(s) 322
GlaI GCGC 4 cut(s) 322, 452, 547, 1335
GluI GCNGC 8 cut(s) 716, 719, 772, 1019, 1243, 1246, 1586, 1589
GsuI CTGGAG 2 cut(s) 65, 248
HaeII RGCGCY 2 cut(s) 549, 1337
HaeIII GGCC 6 cut(s) 198, 794, 892, 1087, 1207, 1558
HgaI GACGC 2 cut(s) 241, 497
HhaI GCGC 4 cut(s) 323, 453, 548, 1336
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 4 cut(s) 29, 832, 1010, 1060
Hin6I GCGC 4 cut(s) 321, 451, 546, 1334
HinP1I GCGC 4 cut(s) 321, 451, 546, 1334
HincII GTYRAC 1 cut(s) 1462
HindII GTYRAC 1 cut(s) 1462
HinfI GANTC 7 cut(s) 39, 180, 215, 590, 851, 1075, 1406
HphI GGTGA 3 cut(s) 70, 149, 323
Hpy166II GTNNAC 2 cut(s) 1079, 1462
Hpy188III TCNNGA 7 cut(s) 219, 388, 515, 829, 1007, 1300, 1320
Hpy8I GTNNAC 2 cut(s) 1079, 1462
Hpy99I CGWCG 3 cut(s) 197, 244, 513
HpyAV CCTTC 1 cut(s) 871
HpyCH4III ACNGT 4 cut(s) 662, 1216, 1366, 1441
HpyCH4V TGCA 3 cut(s) 336, 503, 987
HpyF10VI GCNNNNNNNGC 7 cut(s) 327, 724, 1042, 1133, 1142, 1151, 1340
HpyF3I CTNAG 7 cut(s) 272, 653, 723, 861, 894, 1037, 1550
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 4 cut(s) 29, 832, 1010, 1060
HspAI GCGC 4 cut(s) 321, 451, 546, 1334
Kzo9I GATC 4 cut(s) 57, 585, 1316, 1576
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 6 cut(s) 335, 543, 700, 708, 1291, 1331
Lsp1109I GCAGC 7 cut(s) 705, 758, 1030, 1254, 1257, 1597, 1600
MaeI CTAG 5 cut(s) 936, 1124, 1137, 1155, 1281
MaeIII GTNAC 5 cut(s) 925, 1091, 1468, 1479, 1511
MalI GATC 4 cut(s) 59, 587, 1318, 1578
MboI GATC 4 cut(s) 57, 585, 1316, 1576
MboII GAAGA 6 cut(s) 400, 419, 547, 592, 1082, 1401
MfeI CAATTG 2 cut(s) 416, 1116
MhlI GDGCHC 4 cut(s) 281, 628, 705, 1309
MluCI AATT 7 cut(s) 209, 416, 437, 742, 904, 1047, 1116
MlyI GAGTC 3 cut(s) 174, 845, 1084
MmeI TCCRAC 4 cut(s) 141, 216, 960, 1309
MroXI GAANNNNTTC 1 cut(s) 1144
MseI TTAA 3 cut(s) 801, 903, 1379
MslI CAYNNNNRTG 2 cut(s) 732, 1011
MspA1I CMGCKG 1 cut(s) 718
MspR9I CCNGG 6 cut(s) 44, 227, 856, 1089, 1202, 1238
MunI CAATTG 2 cut(s) 416, 1116
MvaI CCWGG 6 cut(s) 44, 227, 856, 1089, 1202, 1238
MwoI GCNNNNNNNGC 7 cut(s) 327, 724, 1042, 1133, 1142, 1151, 1340
NdeI CATATG 1 cut(s) 1066
NdeII GATC 4 cut(s) 57, 585, 1316, 1576
NlaIII CATG 4 cut(s) 29, 832, 1010, 1060
NlaIV GGNNCC 3 cut(s) 278, 392, 1206
NmuCI GTSAC 2 cut(s) 1468, 1479
NsbI TGCGCA 1 cut(s) 322
NspI RCATGY 2 cut(s) 29, 1060
NspV TTCGAA 2 cut(s) 89, 213
PagI TCATGA 2 cut(s) 828, 1006
PceI AGGCCT 2 cut(s) 794, 892
PciI ACATGT 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 432
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 1144
PfeI GAWTC 4 cut(s) 39, 215, 590, 1406
PflFI GACNNNGTC 1 cut(s) 1466
PflMI CCANNNNNTGG 2 cut(s) 576, 1472
PfoI TCCNGGA 2 cut(s) 42, 854
PkrI GCNGC 8 cut(s) 717, 720, 773, 1020, 1244, 1247, 1587, 1590
PleI GAGTC 3 cut(s) 174, 845, 1083
PpsI GAGTC 3 cut(s) 174, 845, 1083
PscI ACATGT 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 903
Psp124BI GAGCTC 1 cut(s) 705
Psp6I CCWGG 6 cut(s) 42, 225, 854, 1087, 1200, 1236
PspGI CCWGG 6 cut(s) 42, 225, 854, 1087, 1200, 1236
PspN4I GGNNCC 3 cut(s) 278, 392, 1206
PspPI GGNCC 4 cut(s) 346, 1205, 1488, 1538
PstNI CAGNNNCTG 1 cut(s) 1472
PsyI GACNNNGTC 1 cut(s) 1466
RsaI GTAC 1 cut(s) 940
RsaNI GTAC 1 cut(s) 939
RseI CAYNNNNRTG 2 cut(s) 732, 1011
SacI GAGCTC 1 cut(s) 705
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 3 cut(s) 801, 903, 1379
SatI GCNGC 8 cut(s) 716, 719, 772, 1019, 1243, 1246, 1586, 1589
Sau3AI GATC 4 cut(s) 57, 585, 1316, 1576
Sau96I GGNCC 4 cut(s) 346, 1205, 1488, 1538
SchI GAGTC 3 cut(s) 174, 845, 1084
ScrFI CCNGG 6 cut(s) 44, 227, 856, 1089, 1202, 1238
SduI GDGCHC 4 cut(s) 281, 628, 705, 1309
SfcI CTRYAG 1 cut(s) 1344
SfuI TTCGAA 2 cut(s) 89, 213
SinI GGWCC 3 cut(s) 346, 1488, 1538
SmiMI CAYNNNNRTG 2 cut(s) 732, 1011
SmlI CTYRAG 1 cut(s) 1580
SmoI CTYRAG 1 cut(s) 1580
SpeI ACTAGT 1 cut(s) 935
Sse9I AATT 7 cut(s) 209, 416, 437, 742, 904, 1047, 1116
SseBI AGGCCT 2 cut(s) 794, 892
SsiI CCGC 5 cut(s) 5, 73, 477, 716, 969
SspMI CTAG 5 cut(s) 936, 1124, 1137, 1155, 1281
SstI GAGCTC 1 cut(s) 705
StuI AGGCCT 2 cut(s) 794, 892
StyD4I CCNGG 6 cut(s) 42, 225, 854, 1087, 1200, 1236
TaaI ACNGT 4 cut(s) 662, 1216, 1366, 1441
TaqI TCGA 4 cut(s) 89, 213, 588, 1412
TasI AATT 7 cut(s) 209, 416, 437, 742, 904, 1047, 1116
TatI WGTACW 1 cut(s) 938
TauI GCSGC 1 cut(s) 718
TfiI GAWTC 4 cut(s) 39, 215, 590, 1406
Tru1I TTAA 3 cut(s) 801, 903, 1379
Tru9I TTAA 3 cut(s) 801, 903, 1379
TscAI CASTG 2 cut(s) 1444, 1477
TseFI GTSAC 2 cut(s) 1468, 1479
TseI GCWGC 7 cut(s) 718, 771, 1018, 1242, 1245, 1585, 1588
Tsp45I GTSAC 2 cut(s) 1468, 1479
TspDTI ATGAA 4 cut(s) 94, 393, 635, 1083
TspGWI ACGGA 4 cut(s) 73, 250, 542, 944
TspRI CASTG 2 cut(s) 1444, 1477
Tth111I GACNNNGTC 1 cut(s) 1466
Van91I CCANNNNNTGG 2 cut(s) 576, 1472
VpaK11BI GGWCC 3 cut(s) 346, 1488, 1538
VspI ATTAAT 1 cut(s) 903
XapI RAATTY 2 cut(s) 437, 742
XceI RCATGY 2 cut(s) 29, 1060
XcmI CCANNNNNNNNNTGG 2 cut(s) 170, 1473
XmiI GTMKAC 1 cut(s) 1078
XmnI GAANNNNTTC 1 cut(s) 1144
XspI CTAG 5 cut(s) 936, 1124, 1137, 1155, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.