RLG00000017764

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000082
Physical Location & Seq
Reverse (-)
20906238 .. 20909622
3385 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017764

Sequence Viewer

Length: 693 bp
ATGAGTGGAATGAGGGGGACTTTTACTAATGAGGCGCTCCATTGGCTCCAAAAACTGCGTCAGCCAGAGCTACTAGACACTCCCCGAAACACCATCACTGCTTTTGATTTAGCCAAACAAGAGTTTCGGCAAATGTCGCTGCCTCTTTTGGGAGAGACGAGTTCAGATAGGGATTGTTTTTTCAGTGATATAGGGATTGTTTTTGGAGGGTGCCTGTGTGTATCGAGTTTTAAGAGGCAGAGAAGGGGAGCCGGGCATGGTAGTCTCTATGTTCAATTATGGGTCATGATGGAGTATGGTGTTTGTGATTCTTGGACCAAGCTGTTTAGGTTTGAGATGGACGAAGTTAACCTTTGCCTACCAATCTGCTGCACAGAAAGAATGATAGTTATGTCGAGATACAAACGTTGGGATCTGGAGTTGATCAGGTTTGATCATGATGAAGAGAAGCTTGACAATGTTGCGGTGATCGAAAAGACTCAAACCCAACAGAAGCAGAAATATTGCGGGTTGCAGTTTTGGATTGTATGGTTGCAAGAACAATTGTGTGGATCAGTTGAAATGAGTGCACTCTTAGTGATTATAGTATCAACTATCCTATCAAATATTCTGTTTCTGGTTGGTTACTTCTCTCATTTGGTTCAGCTGTTATTGTTGCCTAAGCTTTACAATGAATCGGAAGGACAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

231

Amino Acids

26.67

Weight (kDa)

5.63

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 210
AciI CCGC 2 cut(s) 464, 507
AclI AACGTT 1 cut(s) 406
AclWI GGATC 2 cut(s) 420, 559
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 275, 560
AluBI AGCT 5 cut(s) 70, 322, 451, 646, 664
AluI AGCT 5 cut(s) 70, 322, 451, 646, 664
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 2 cut(s) 149, 269
Alw44I GTGCAC 1 cut(s) 567
AlwI GGATC 2 cut(s) 420, 559
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 2 cut(s) 139, 369
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 478
AvaII GGWCC 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 571
BaeI ACNNNNGTAYC 2 cut(s) 391, 424
BanI GGYRCC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 2 cut(s) 126, 356
BccI CCATC 3 cut(s) 101, 283, 331
BclI TGATCA 2 cut(s) 423, 433
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 149, 269
BfaI CTAG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 2 cut(s) 140, 370
BlsI GCNGC 2 cut(s) 141, 371
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 3 cut(s) 47, 212, 250
BmrFI CCNGG 1 cut(s) 253
BpmI CTGGAG 1 cut(s) 437
Bpu10I CCTNAGC 1 cut(s) 660
BpuMI CCSGG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 571
BseXI GCAGC 2 cut(s) 126, 356
BsgI GTGCAG 1 cut(s) 355
BshNI GGYRCC 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 571
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 2 cut(s) 149, 269
BsmBI CGTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 5 cut(s) 412, 423, 433, 468, 551
BspACI CCGC 2 cut(s) 464, 507
BspHI TCATGA 2 cut(s) 285, 436
BspLI GGNNCC 3 cut(s) 47, 212, 250
BspPI GGATC 2 cut(s) 420, 559
BspT107I GGYRCC 1 cut(s) 210
BssMI GATC 5 cut(s) 412, 423, 433, 468, 551
Bst6I CTCTTC 1 cut(s) 438
BstDEI CTNAG 2 cut(s) 574, 660
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 5 cut(s) 415, 426, 436, 471, 554
BstMAI GTCTC 2 cut(s) 149, 269
BstMBI GATC 5 cut(s) 412, 423, 433, 468, 551
BstMWI GCNNNNNNNGC 2 cut(s) 43, 136
BstSCI CCNGG 1 cut(s) 251
BstSLI GKGCMC 1 cut(s) 571
BstV1I GCAGC 2 cut(s) 126, 356
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 190
CciI TCATGA 2 cut(s) 285, 436
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 315
CseI GACGC 1 cut(s) 47
CviAII CATG 3 cut(s) 257, 286, 437
CviJI RGCY 9 cut(s) 46, 64, 70, 113, 251, 322, 451, 646, 664
CviKI_1 RGCY 9 cut(s) 46, 64, 70, 113, 251, 322, 451, 646, 664
DdeI CTNAG 2 cut(s) 574, 660
DpnI GATC 5 cut(s) 414, 425, 435, 470, 553
DpnII GATC 5 cut(s) 412, 423, 433, 468, 551
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 3 cut(s) 260, 289, 440
FalI AAGNNNNNCTT 4 cut(s) 336, 368, 435, 467
FaqI GGGAC 1 cut(s) 31
FatI CATG 3 cut(s) 256, 285, 436
FauI CCCGC 1 cut(s) 500
FbaI TGATCA 2 cut(s) 423, 433
Fnu4HI GCNGC 2 cut(s) 140, 370
Fsp4HI GCNGC 2 cut(s) 140, 370
FspBI CTAG 1 cut(s) 74
GlaI GCGC 1 cut(s) 36
GluI GCNGC 2 cut(s) 140, 370
GsuI CTGGAG 1 cut(s) 437
HaeII RGCGCY 1 cut(s) 38
HapII CCGG 1 cut(s) 252
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 37
Hin1II CATG 3 cut(s) 260, 289, 440
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 2 cut(s) 449, 662
HinfI GANTC 3 cut(s) 308, 478, 674
HpaI GTTAAC 1 cut(s) 349
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 2 cut(s) 349, 569
Hpy188I TCNGA 2 cut(s) 166, 679
Hpy188III TCNNGA 4 cut(s) 286, 396, 416, 437
Hpy8I GTNNAC 2 cut(s) 349, 569
HpyAV CCTTC 2 cut(s) 237, 674
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 4 cut(s) 372, 514, 535, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 136
HpyF3I CTNAG 2 cut(s) 574, 660
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 3 cut(s) 260, 289, 440
HspAI GCGC 1 cut(s) 35
Ksp22I TGATCA 2 cut(s) 423, 433
KspAI GTTAAC 1 cut(s) 349
Kzo9I GATC 5 cut(s) 412, 423, 433, 468, 551
LmnI GCTCC 3 cut(s) 42, 51, 248
LpnPI CCDG 7 cut(s) 78, 227, 265, 401, 412, 602, 671
Lsp1109I GCAGC 2 cut(s) 126, 356
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 1 cut(s) 623
MalI GATC 5 cut(s) 414, 425, 435, 470, 553
MboI GATC 5 cut(s) 412, 423, 433, 468, 551
MboII GAAGA 1 cut(s) 455
MfeI CAATTG 1 cut(s) 542
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 2 cut(s) 275, 542
MlyI GAGTC 1 cut(s) 472
MnlI CCTC 5 cut(s) 6, 25, 153, 200, 228
MseI TTAA 2 cut(s) 231, 348
MspA1I CMGCKG 1 cut(s) 646
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 253
MunI CAATTG 1 cut(s) 542
MwoI GCNNNNNNNGC 2 cut(s) 43, 136
NciI CCSGG 1 cut(s) 253
NdeII GATC 5 cut(s) 412, 423, 433, 468, 551
NlaIII CATG 3 cut(s) 260, 289, 440
NlaIV GGNNCC 3 cut(s) 47, 212, 250
PagI TCATGA 2 cut(s) 285, 436
PfeI GAWTC 2 cut(s) 308, 674
PkrI GCNGC 2 cut(s) 141, 371
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
Psp1406I AACGTT 1 cut(s) 406
PspN4I GGNNCC 3 cut(s) 47, 212, 250
PspPI GGNCC 1 cut(s) 315
PsuI RGATCY 1 cut(s) 412
PvuII CAGCTG 1 cut(s) 646
SaqAI TTAA 2 cut(s) 231, 348
SatI GCNGC 2 cut(s) 140, 370
Sau3AI GATC 5 cut(s) 412, 423, 433, 468, 551
Sau96I GGNCC 1 cut(s) 315
SchI GAGTC 1 cut(s) 472
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 1 cut(s) 571
SetI ASST 9 cut(s) 72, 324, 332, 354, 409, 431, 453, 648, 666
SinI GGWCC 1 cut(s) 315
Sse9I AATT 2 cut(s) 275, 542
SsiI CCGC 2 cut(s) 464, 507
SspI AATATT 2 cut(s) 503, 607
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 251
TaiI ACGT 1 cut(s) 409
TaqI TCGA 3 cut(s) 224, 395, 471
TasI AATT 2 cut(s) 275, 542
TfiI GAWTC 2 cut(s) 308, 674
Tru1I TTAA 2 cut(s) 231, 348
Tru9I TTAA 2 cut(s) 231, 348
TscAI CASTG 2 cut(s) 103, 190
TseI GCWGC 2 cut(s) 139, 369
TspDTI ATGAA 2 cut(s) 456, 687
TspRI CASTG 2 cut(s) 103, 190
VneI GTGCAC 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 315
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.