Rw0G015870

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00743
OG0000082
Physical Location & Seq
Forward (+)
19992 .. 20570
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015870.1

Sequence Viewer

Length: 579 bp
ATGGTTAAAATCCTGGAGAGGTTGCCGATCAAATCCTTAATCCGCTTCCCCTCCGTTTCAAAACGCTGGCGCTCCATCATATTGTCCGACCCAAAATTCGCCAAATCCCAGTTCCAAATAGCTTCTCAGCACCAAACCTTCCGTCACAGAGTCCTCATCTCCACTGCCCATGAATCTGAATTTGAATCCCGAGACTTGGCAGCGTCGTCGTCGTGGTCATTTAACGACAATTCTTCAGTGAGAAAGGTTTGGTGCCCGTTCAATCCACCTGGCACTGTTGTCAATTTCCTTTGCTCCTACAACGGTTTGGTATGTGTAGCTCTTACTTTTGACCAAACCAACATTATCTGGAACCCATCAATTGGGTTCTTCAAAAAGCTACCTCACCCAGTTGCTGTTCCCTCGAAATATCAAGGTGTACTCTGTTACGGTTTTGGCTATCTGTCGGCCACTGACGACTACAAAGTTGTCGCAAAACTTGAAGACCATGGGGGGAAGGAAGAGCAGGCCGAGATCTTCTCATTGAGAGCTGACAGTTGGAAAAGGATTCAAGACCCCCCCGTTTTACAACGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

192

Amino Acids

21.89

Weight (kDa)

9.34

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 33 7.1e-08 F-box domain
FBA_3 PF08268 72 - 184 1.6e-10 F-box associated beta propeller domain
FBA_1 PF07734 97 - 186 1.2e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AccB7I CCANNNNNTGG 1 cut(s) 362
AciI CCGC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 2 cut(s) 95, 179
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 420
AfiI CCNNNNNNNGG 2 cut(s) 196, 362
AgsI TTSAA 6 cut(s) 60, 185, 262, 373, 482, 551
AjnI CCWGG 2 cut(s) 12, 268
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 4 cut(s) 122, 320, 379, 530
AluI AGCT 4 cut(s) 122, 320, 379, 530
Alw26I GTCTC 1 cut(s) 186
AlwNI CAGNNNCTG 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 2 cut(s) 447, 507
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 2 cut(s) 95, 179
ArsI GACNNNNNNTTYG 4 cut(s) 80, 112, 127, 159
AspLEI GCGC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 377
AvaI CYCGRG 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 212
BccI CCATC 2 cut(s) 83, 364
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciT130I CCWGG 2 cut(s) 14, 270
BcoDI GTCTC 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 73
BglII AGATCT 1 cut(s) 513
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 14, 270
BmeT110I CYCGRG 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 254, 353
BmrFI CCNGG 2 cut(s) 14, 270
BmrI ACTGGG 2 cut(s) 103, 383
BmuI ACTGGG 2 cut(s) 103, 383
BpiI GAAGAC 1 cut(s) 489
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 487
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 362
Bse1I ACTGG 2 cut(s) 109, 389
BseBI CCWGG 2 cut(s) 14, 270
BseDI CCNNGG 1 cut(s) 487
BseLI CCNNNNNNNGG 2 cut(s) 196, 362
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 109, 389
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 1 cut(s) 212
BshFI GGCC 2 cut(s) 449, 509
BshNI GGYRCC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 196, 362
BsmAI GTCTC 1 cut(s) 186
BsnI GGCC 2 cut(s) 449, 509
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 2 cut(s) 27, 513
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 1 cut(s) 43
BspANI GGCC 2 cut(s) 449, 509
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 254, 353
BspQI GCTCTTC 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 252
BsrI ACTGG 2 cut(s) 109, 389
BssECI CCNNGG 1 cut(s) 487
BssMI GATC 2 cut(s) 27, 513
BssT1I CCWWGG 1 cut(s) 487
Bst2UI CCWGG 2 cut(s) 14, 270
Bst4CI ACNGT 4 cut(s) 277, 305, 431, 536
Bst6I CTCTTC 1 cut(s) 495
BstC8I GCNNGC 2 cut(s) 68, 507
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 487
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 2 cut(s) 30, 516
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 2 cut(s) 27, 513
BstNI CCWGG 2 cut(s) 14, 270
BstSCI CCNGG 2 cut(s) 12, 268
BstSLI GKGCMC 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 513
BstYI RGATCY 1 cut(s) 513
BsuRI GGCC 2 cut(s) 449, 509
BtgI CCRYGG 1 cut(s) 487
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 4 cut(s) 162, 243, 273, 450
Cac8I GCNNGC 2 cut(s) 68, 507
CaiI CAGNNNCTG 1 cut(s) 395
CfoI GCGC 1 cut(s) 72
CseI GACGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 419
CviAII CATG 2 cut(s) 170, 488
CviJI RGCY 7 cut(s) 122, 320, 379, 438, 449, 509, 530
CviKI_1 RGCY 7 cut(s) 122, 320, 379, 438, 449, 509, 530
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 1 cut(s) 126
DpnI GATC 2 cut(s) 29, 515
DpnII GATC 2 cut(s) 27, 513
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco130I CCWWGG 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 12, 268
EcoT14I CCWWGG 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 2 cut(s) 173, 491
FaiI YATR 4 cut(s) 80, 171, 313, 489
FatI CATG 2 cut(s) 169, 487
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
GlaI GCGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 2 cut(s) 449, 509
HgaI GACGC 1 cut(s) 192
HhaI GCGC 1 cut(s) 72
Hin1II CATG 2 cut(s) 173, 491
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 4 cut(s) 150, 173, 185, 547
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 2 cut(s) 88, 178
Hpy188III TCNNGA 3 cut(s) 189, 349, 551
Hpy8I GTNNAC 1 cut(s) 419
Hpy99I CGWCG 3 cut(s) 208, 211, 214
HpyAV CCTTC 2 cut(s) 148, 490
HpyCH4III ACNGT 4 cut(s) 277, 305, 431, 536
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 2 cut(s) 173, 491
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 2 cut(s) 27, 513
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 2 cut(s) 77, 299
LpnPI CCDG 8 cut(s) 26, 52, 122, 255, 282, 334, 402, 491
Lsp1109I GCAGC 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 143, 425
MalI GATC 2 cut(s) 29, 515
MboI GATC 2 cut(s) 27, 513
MboII GAAGA 5 cut(s) 225, 361, 494, 508, 512
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 5 cut(s) 95, 179, 229, 283, 360
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 2 cut(s) 111, 518
MnlI CCTC 5 cut(s) 12, 61, 164, 393, 412
MseI TTAA 3 cut(s) 6, 38, 222
MspR9I CCNGG 2 cut(s) 14, 270
MunI CAATTG 1 cut(s) 360
MvaI CCWGG 2 cut(s) 14, 270
NcoI CCATGG 1 cut(s) 487
NdeII GATC 2 cut(s) 27, 513
NlaIII CATG 2 cut(s) 173, 491
NlaIV GGNNCC 2 cut(s) 254, 353
NmeAIII GCCGAG 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 143
PciSI GCTCTTC 1 cut(s) 495
PfeI GAWTC 3 cut(s) 173, 185, 547
PflMI CCANNNNNTGG 1 cut(s) 362
PfoI TCCNGGA 1 cut(s) 12
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 12, 268
PspGI CCWGG 2 cut(s) 12, 268
PspN4I GGNNCC 2 cut(s) 254, 353
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 1 cut(s) 513
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 3 cut(s) 6, 38, 222
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 27, 513
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 2 cut(s) 14, 270
SduI GDGCHC 1 cut(s) 257
Sse9I AATT 5 cut(s) 95, 179, 229, 283, 360
SsiI CCGC 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 12, 268
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 4 cut(s) 277, 305, 431, 536
TaqI TCGA 1 cut(s) 404
TasI AATT 5 cut(s) 95, 179, 229, 283, 360
TatI WGTACW 1 cut(s) 418
TfiI GAWTC 3 cut(s) 173, 185, 547
Tru1I TTAA 3 cut(s) 6, 38, 222
Tru9I TTAA 3 cut(s) 6, 38, 222
TscAI CASTG 4 cut(s) 169, 243, 280, 457
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 186
TspGWI ACGGA 2 cut(s) 43, 131
TspRI CASTG 4 cut(s) 169, 243, 280, 457
Van91I CCANNNNNTGG 1 cut(s) 362
XapI RAATTY 2 cut(s) 95, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.